Wall clock time and date at job start Tue Mar 31 2020 20:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.44419 * 2 1 4 4 C 1.53030 * 109.46230 * 240.03321 * 2 1 3 5 5 C 1.53195 * 109.31469 * 178.61565 * 4 2 1 6 6 N 1.46922 * 108.77531 * 54.63442 * 5 4 2 7 7 C 1.34774 * 120.63465 * 126.41297 * 6 5 4 8 8 O 1.21555 * 119.99789 * 354.89330 * 7 6 5 9 9 C 1.47840 * 120.00110 * 174.88248 * 7 6 5 10 10 C 1.39563 * 120.55777 * 320.36504 * 9 7 6 11 11 N 1.31659 * 120.59427 * 179.97438 * 10 9 7 12 12 C 1.31941 * 121.89737 * 0.02562 * 11 10 9 13 13 C 1.38426 * 121.06118 * 359.97438 * 12 11 10 14 14 Cl 1.73603 * 120.35915 * 179.97438 * 13 12 11 15 15 C 1.38505 * 119.27879 * 359.78965 * 13 12 11 16 16 C 1.46934 * 118.73959 * 306.39444 * 6 5 4 17 17 C 1.53036 * 109.45559 * 119.96211 * 2 1 3 18 18 H 1.08999 * 109.49955 * 61.44234 * 17 2 1 19 19 C 1.53004 * 109.52833 * 301.35467 * 17 2 1 20 20 N 1.46500 * 109.47136 * 175.08427 * 19 17 2 21 21 C 1.36935 * 119.99916 * 180.02562 * 20 19 17 22 22 H 1.08003 * 119.99799 * 359.97438 * 21 20 19 23 23 C 1.38814 * 120.00108 * 179.97438 * 21 20 19 24 24 N 1.31615 * 119.99829 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00052 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47288 * 89.99855 * 25 23 21 27 27 H 1.48505 * 109.47246 * 210.00176 * 25 23 21 28 28 H 1.48503 * 109.47314 * 329.99907 * 25 23 21 29 29 H 1.08997 * 109.47508 * 300.03361 * 1 2 3 30 30 H 1.09006 * 109.46967 * 60.04036 * 1 2 3 31 31 H 1.09002 * 109.46989 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.50255 * 58.66249 * 4 2 1 33 33 H 1.09005 * 109.49667 * 298.56730 * 4 2 1 34 34 H 1.08997 * 109.58068 * 294.84731 * 5 4 2 35 35 H 1.09004 * 109.70338 * 174.49088 * 5 4 2 36 36 H 1.07996 * 119.70061 * 0.02562 * 10 9 7 37 37 H 1.08007 * 119.47071 * 180.02562 * 12 11 10 38 38 H 1.08004 * 120.86422 * 180.23270 * 15 13 12 39 39 H 1.09007 * 109.58202 * 293.82234 * 16 6 5 40 40 H 1.08996 * 109.70831 * 173.46626 * 16 6 5 41 41 H 1.08999 * 109.46586 * 295.08384 * 19 17 2 42 42 H 1.08996 * 109.46627 * 55.08033 * 19 17 2 43 43 H 0.96997 * 120.00092 * 0.02562 * 20 19 17 44 44 H 0.97002 * 119.99674 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7207 -1.2500 5 6 3.5714 -0.6885 -1.2641 6 7 4.0679 -1.2488 0.0001 7 6 4.9621 -2.2572 0.0002 8 8 5.2954 -2.7740 -1.0483 9 6 5.5377 -2.7346 1.2755 10 6 5.8843 -1.8300 2.2803 11 7 6.3965 -2.2544 3.4165 12 6 6.6027 -3.5360 3.6527 13 6 6.2858 -4.4965 2.7075 14 17 6.5654 -6.1778 3.0373 15 6 5.7396 -4.1017 1.4975 16 6 3.5713 -0.6885 1.2644 17 6 2.0397 -0.7207 1.2501 18 1 1.6978 -1.7556 1.2384 19 6 1.5026 -0.0195 2.4995 20 7 1.8935 -0.7771 3.6908 21 6 1.5223 -0.3382 4.9337 22 1 0.9417 0.5668 5.0356 23 6 1.8923 -1.0563 6.0625 24 7 2.6003 -2.1588 5.9383 25 14 1.3865 -0.4572 7.7580 26 1 0.0716 -1.0454 8.1190 27 1 2.4056 -0.8737 8.7546 28 1 1.2802 1.0240 7.7483 29 1 -0.3634 0.5143 0.8896 30 1 -0.3633 0.5132 -0.8904 31 1 -0.3633 -1.0277 0.0005 32 1 1.6573 -0.2208 -2.1398 33 1 1.6978 -1.7556 -1.2382 34 1 3.9143 0.3410 -1.3672 35 1 3.9438 -1.2830 -2.0984 36 1 5.7302 -0.7725 2.1246 37 1 7.0248 -3.8407 4.5990 38 1 5.4793 -4.8297 0.7433 39 1 3.9142 0.3411 1.3675 40 1 3.9415 -1.2823 2.1001 41 1 1.9163 0.9873 2.5571 42 1 0.4155 0.0370 2.4452 43 1 2.4153 -1.5896 3.5993 44 1 2.8591 -2.6604 6.7272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133165960.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:04 Heat of formation + Delta-G solvation = 6.396101 kcal Electronic energy + Delta-G solvation = -27722.162469 eV Core-core repulsion = 23893.550682 eV Total energy + Delta-G solvation = -3828.611787 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.97621 -39.52329 -38.00565 -36.68876 -34.88436 -34.01975 -32.65534 -32.10985 -31.17045 -29.78677 -28.27093 -25.67516 -25.00944 -23.86003 -23.15077 -22.87016 -21.25817 -20.23039 -19.43385 -17.72784 -17.21555 -17.00166 -16.70789 -16.06028 -15.28559 -15.01490 -14.90555 -14.53022 -14.21765 -14.00923 -13.88221 -13.68622 -13.28938 -13.20726 -12.98410 -12.85711 -12.64935 -12.41354 -12.08336 -11.95453 -11.72048 -11.56833 -11.29966 -11.03794 -10.95821 -10.87635 -10.70181 -10.43181 -10.27935 -10.18472 -9.95859 -9.86847 -9.65892 -9.43589 -8.93814 -8.89851 -8.63604 -6.94206 -5.77395 -3.06480 0.60551 1.00754 1.90670 2.64755 2.91113 3.42788 3.48287 3.49774 3.66276 4.21331 4.45888 4.55279 4.63282 4.67466 4.76075 4.80978 4.85788 5.04830 5.08015 5.21408 5.28470 5.39454 5.50458 5.56920 5.62787 5.67571 5.75010 5.79059 5.81123 5.84755 5.94173 5.94269 5.99959 6.13425 6.23606 6.31133 6.35666 6.39940 6.50994 6.72433 6.80477 7.29135 7.69084 7.77959 8.03302 8.39998 9.51741 10.07291 10.41515 11.44690 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.006962 B = 0.005714 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4021.138375 B = 4898.914848 C = 8244.102629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.128 4.128 5 C 0.112 3.888 6 N -0.601 5.601 7 C 0.570 3.430 8 O -0.540 6.540 9 C -0.176 4.176 10 C 0.146 3.854 11 N -0.454 5.454 12 C 0.147 3.853 13 C -0.095 4.095 14 Cl -0.052 7.052 15 C -0.015 4.015 16 C 0.101 3.899 17 C -0.102 4.102 18 H 0.075 0.925 19 C 0.157 3.843 20 N -0.732 5.732 21 C -0.242 4.242 22 H 0.069 0.931 23 C -0.009 4.009 24 N -0.927 5.927 25 Si 0.904 3.096 26 H -0.291 1.291 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.168 0.832 37 H 0.169 0.831 38 H 0.150 0.850 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.020 0.980 42 H 0.029 0.971 43 H 0.381 0.619 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.963 -0.189 -13.122 14.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.166 4.166 5 C -0.010 4.010 6 N -0.333 5.333 7 C 0.358 3.642 8 O -0.418 6.418 9 C -0.181 4.181 10 C -0.012 4.012 11 N -0.161 5.161 12 C -0.011 4.011 13 C -0.124 4.124 14 Cl -0.024 7.024 15 C -0.041 4.041 16 C -0.021 4.021 17 C -0.122 4.122 18 H 0.093 0.907 19 C 0.029 3.971 20 N -0.376 5.376 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.205 4.205 24 N -0.575 5.575 25 Si 0.735 3.265 26 H -0.219 1.219 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.185 0.815 37 H 0.186 0.814 38 H 0.168 0.832 39 H 0.093 0.907 40 H 0.119 0.881 41 H 0.038 0.962 42 H 0.047 0.953 43 H 0.215 0.785 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.321 0.112 -12.871 13.928 hybrid contribution -0.495 -0.765 0.539 1.059 sum 4.825 -0.653 -12.333 13.259 Atomic orbital electron populations 1.21880 0.94854 1.02004 1.01771 1.21098 0.96097 0.99374 0.93791 0.90935 1.21981 0.94619 1.01632 0.98373 1.21643 0.94259 0.98854 0.86248 1.48075 1.42108 1.34876 1.08271 1.17990 0.78911 0.79255 0.88036 1.90762 1.61478 1.56878 1.32666 1.20845 1.05819 0.94560 0.96917 1.23252 0.90565 1.00461 0.86963 1.67908 1.12176 1.15970 1.20078 1.23017 0.92979 0.87168 0.97944 1.21922 1.05964 0.87279 0.97243 1.98379 1.94809 1.13897 1.95286 1.21443 0.92393 0.95076 0.95232 1.22298 0.95149 0.99656 0.85001 1.21727 0.93839 1.01027 0.95578 0.90699 1.20748 0.97096 0.94086 0.85139 1.42358 1.65345 1.29077 1.00858 1.19159 1.28084 1.06442 0.83656 0.91279 1.24700 1.00681 0.97464 0.97679 1.69642 1.42171 1.17228 1.28482 0.86244 0.77602 0.77962 0.84668 1.21854 1.21774 1.20810 0.91601 0.93134 0.92777 0.90723 0.91464 0.91251 0.89009 0.81460 0.81395 0.83224 0.90685 0.88142 0.96175 0.95325 0.78537 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.81 37.16 0.33 -1.33 16 2 C -0.08 -0.97 2.23 -90.58 -0.20 -1.18 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -1.32 5.36 -26.61 -0.14 -1.46 16 5 C 0.11 1.24 6.44 -3.71 -0.02 1.22 16 6 N -0.60 -7.99 2.97 -173.87 -0.52 -8.51 16 7 C 0.57 8.59 7.35 -12.33 -0.09 8.50 16 8 O -0.54 -9.26 16.36 5.32 0.09 -9.17 16 9 C -0.18 -2.61 5.17 -104.83 -0.54 -3.15 16 10 C 0.15 2.20 8.55 -17.13 -0.15 2.05 16 11 N -0.45 -7.42 10.34 -12.88 -0.13 -7.55 16 12 C 0.15 2.15 10.97 -17.44 -0.19 1.96 16 13 C -0.10 -1.32 6.34 -39.41 -0.25 -1.57 16 14 Cl -0.05 -0.64 28.98 -51.86 -1.50 -2.15 16 15 C -0.01 -0.21 9.60 -38.83 -0.37 -0.58 16 16 C 0.10 1.43 3.97 -3.70 -0.01 1.41 16 17 C -0.10 -1.50 1.92 -90.50 -0.17 -1.68 16 18 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 19 C 0.16 2.88 5.41 -4.04 -0.02 2.86 16 20 N -0.73 -17.34 5.38 -59.91 -0.32 -17.67 16 21 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 22 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 23 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 24 N -0.93 -26.98 13.06 55.49 0.72 -26.25 16 25 Si 0.90 22.01 29.55 -169.99 -5.02 16.99 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 H 0.07 0.80 6.30 -51.93 -0.33 0.47 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.08 6.99 -51.93 -0.36 0.71 16 36 H 0.17 2.27 6.49 -52.49 -0.34 1.93 16 37 H 0.17 2.11 8.06 -52.48 -0.42 1.68 16 38 H 0.15 1.95 8.06 -52.48 -0.42 1.53 16 39 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 40 H 0.10 1.65 3.85 -51.93 -0.20 1.45 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.03 0.54 6.15 -51.93 -0.32 0.22 16 43 H 0.38 9.58 6.89 -40.82 -0.28 9.30 16 44 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 367.78 15.07 5.54 5.54 Total: -1.00 -30.88 367.78 -9.26 -40.14 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.03 Total: 8.56 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -2.09 Total: 0.06 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.25 Total: -59.98 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.88 -9.26 -40.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133165960.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.538 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds