Wall clock time and date at job start Tue Mar 31 2020 20:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.44419 * 2 1 4 4 C 1.53030 * 109.46230 * 240.03321 * 2 1 3 5 5 C 1.53195 * 109.31469 * 178.61565 * 4 2 1 6 6 N 1.46922 * 108.77531 * 54.63442 * 5 4 2 7 7 C 1.34774 * 120.63465 * 126.41297 * 6 5 4 8 8 O 1.21555 * 119.99789 * 354.89330 * 7 6 5 9 9 C 1.47840 * 120.00110 * 174.88248 * 7 6 5 10 10 C 1.39563 * 120.55777 * 320.36504 * 9 7 6 11 11 N 1.31659 * 120.59427 * 179.97438 * 10 9 7 12 12 C 1.31941 * 121.89737 * 0.02562 * 11 10 9 13 13 C 1.38426 * 121.06118 * 359.97438 * 12 11 10 14 14 Cl 1.73603 * 120.35915 * 179.97438 * 13 12 11 15 15 C 1.38505 * 119.27879 * 359.78965 * 13 12 11 16 16 C 1.46934 * 118.73959 * 306.39444 * 6 5 4 17 17 C 1.53036 * 109.45559 * 119.96211 * 2 1 3 18 18 H 1.08999 * 109.49955 * 61.44234 * 17 2 1 19 19 C 1.53004 * 109.52833 * 301.35467 * 17 2 1 20 20 N 1.46500 * 109.47136 * 175.08427 * 19 17 2 21 21 C 1.36935 * 119.99916 * 180.02562 * 20 19 17 22 22 H 1.08003 * 119.99799 * 359.97438 * 21 20 19 23 23 C 1.38814 * 120.00108 * 179.97438 * 21 20 19 24 24 N 1.31615 * 119.99829 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00052 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47288 * 89.99855 * 25 23 21 27 27 H 1.48505 * 109.47246 * 210.00176 * 25 23 21 28 28 H 1.48503 * 109.47314 * 329.99907 * 25 23 21 29 29 H 1.08997 * 109.47508 * 300.03361 * 1 2 3 30 30 H 1.09006 * 109.46967 * 60.04036 * 1 2 3 31 31 H 1.09002 * 109.46989 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.50255 * 58.66249 * 4 2 1 33 33 H 1.09005 * 109.49667 * 298.56730 * 4 2 1 34 34 H 1.08997 * 109.58068 * 294.84731 * 5 4 2 35 35 H 1.09004 * 109.70338 * 174.49088 * 5 4 2 36 36 H 1.07996 * 119.70061 * 0.02562 * 10 9 7 37 37 H 1.08007 * 119.47071 * 180.02562 * 12 11 10 38 38 H 1.08004 * 120.86422 * 180.23270 * 15 13 12 39 39 H 1.09007 * 109.58202 * 293.82234 * 16 6 5 40 40 H 1.08996 * 109.70831 * 173.46626 * 16 6 5 41 41 H 1.08999 * 109.46586 * 295.08384 * 19 17 2 42 42 H 1.08996 * 109.46627 * 55.08033 * 19 17 2 43 43 H 0.96997 * 120.00092 * 0.02562 * 20 19 17 44 44 H 0.97002 * 119.99674 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7207 -1.2500 5 6 3.5714 -0.6885 -1.2641 6 7 4.0679 -1.2488 0.0001 7 6 4.9621 -2.2572 0.0002 8 8 5.2954 -2.7740 -1.0483 9 6 5.5377 -2.7346 1.2755 10 6 5.8843 -1.8300 2.2803 11 7 6.3965 -2.2544 3.4165 12 6 6.6027 -3.5360 3.6527 13 6 6.2858 -4.4965 2.7075 14 17 6.5654 -6.1778 3.0373 15 6 5.7396 -4.1017 1.4975 16 6 3.5713 -0.6885 1.2644 17 6 2.0397 -0.7207 1.2501 18 1 1.6978 -1.7556 1.2384 19 6 1.5026 -0.0195 2.4995 20 7 1.8935 -0.7771 3.6908 21 6 1.5223 -0.3382 4.9337 22 1 0.9417 0.5668 5.0356 23 6 1.8923 -1.0563 6.0625 24 7 2.6003 -2.1588 5.9383 25 14 1.3865 -0.4572 7.7580 26 1 0.0716 -1.0454 8.1190 27 1 2.4056 -0.8737 8.7546 28 1 1.2802 1.0240 7.7483 29 1 -0.3634 0.5143 0.8896 30 1 -0.3633 0.5132 -0.8904 31 1 -0.3633 -1.0277 0.0005 32 1 1.6573 -0.2208 -2.1398 33 1 1.6978 -1.7556 -1.2382 34 1 3.9143 0.3410 -1.3672 35 1 3.9438 -1.2830 -2.0984 36 1 5.7302 -0.7725 2.1246 37 1 7.0248 -3.8407 4.5990 38 1 5.4793 -4.8297 0.7433 39 1 3.9142 0.3411 1.3675 40 1 3.9415 -1.2823 2.1001 41 1 1.9163 0.9873 2.5571 42 1 0.4155 0.0370 2.4452 43 1 2.4153 -1.5896 3.5993 44 1 2.8591 -2.6604 6.7272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133165960.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:03 Heat of formation + Delta-G solvation = -11.939182 kcal Electronic energy + Delta-G solvation = -27722.957546 eV Core-core repulsion = 23893.550682 eV Total energy + Delta-G solvation = -3829.406864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.11817 -40.64521 -39.20239 -37.75418 -36.47888 -35.22186 -33.93318 -33.51403 -32.45331 -31.27229 -29.33871 -27.23607 -26.10116 -25.21442 -24.65111 -23.92025 -22.52293 -21.43861 -20.50588 -19.13708 -18.71424 -18.32980 -17.85044 -17.19045 -16.69853 -16.39142 -16.13888 -15.59418 -15.55768 -15.37955 -15.18825 -15.05617 -14.45075 -14.40333 -14.35250 -14.04756 -13.96158 -13.59282 -13.23432 -13.01628 -12.99672 -12.79664 -12.65567 -12.60310 -12.34408 -12.16559 -12.00347 -11.90301 -11.78422 -11.54106 -11.23511 -11.14995 -11.01204 -10.86660 -10.61208 -10.06225 -9.73486 -8.91045 -7.88043 -5.15652 -0.54123 -0.13418 0.81579 1.47299 1.50025 1.50232 1.58333 1.82109 2.50806 2.59750 3.08036 3.33711 3.46056 3.52019 3.55408 3.65265 3.81562 3.83978 3.94662 4.02404 4.09304 4.18957 4.30700 4.44942 4.52814 4.61217 4.65591 4.67115 4.76860 4.81415 4.82497 4.91131 4.96835 5.10010 5.14544 5.17447 5.20975 5.26875 5.46387 5.48740 5.56219 5.59568 6.14698 6.32502 6.62468 6.88208 7.40126 8.15100 8.37518 9.34030 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.006962 B = 0.005714 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4021.138375 B = 4898.914848 C = 8244.102629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 H 0.090 0.910 4 C -0.119 4.119 5 C 0.107 3.893 6 N -0.594 5.594 7 C 0.571 3.429 8 O -0.564 6.564 9 C -0.183 4.183 10 C 0.143 3.857 11 N -0.481 5.481 12 C 0.137 3.863 13 C -0.094 4.094 14 Cl -0.037 7.037 15 C -0.020 4.020 16 C 0.107 3.893 17 C -0.092 4.092 18 H 0.052 0.948 19 C 0.157 3.843 20 N -0.742 5.742 21 C -0.242 4.242 22 H 0.074 0.926 23 C -0.067 4.067 24 N -0.958 5.958 25 Si 0.962 3.038 26 H -0.292 1.292 27 H -0.299 1.299 28 H -0.270 1.270 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.106 0.894 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.178 0.822 37 H 0.184 0.816 38 H 0.159 0.841 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.029 0.971 42 H 0.030 0.970 43 H 0.371 0.629 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.347 1.214 -14.353 15.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 H 0.108 0.892 4 C -0.157 4.157 5 C -0.014 4.014 6 N -0.324 5.324 7 C 0.358 3.642 8 O -0.444 6.444 9 C -0.188 4.188 10 C -0.015 4.015 11 N -0.189 5.189 12 C -0.020 4.020 13 C -0.123 4.123 14 Cl -0.008 7.008 15 C -0.047 4.047 16 C -0.015 4.015 17 C -0.111 4.111 18 H 0.070 0.930 19 C 0.031 3.969 20 N -0.385 5.385 21 C -0.374 4.374 22 H 0.092 0.908 23 C -0.260 4.260 24 N -0.608 5.608 25 Si 0.793 3.207 26 H -0.219 1.219 27 H -0.225 1.225 28 H -0.195 1.195 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.195 0.805 37 H 0.201 0.799 38 H 0.177 0.823 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.203 0.797 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.670 1.561 -14.133 14.966 hybrid contribution -0.350 -1.194 0.877 1.523 sum 4.320 0.367 -13.256 13.947 Atomic orbital electron populations 1.21856 0.94465 1.01569 1.02415 1.21085 0.96346 0.99857 0.92407 0.89214 1.21936 0.93879 1.01018 0.98883 1.21894 0.94779 0.99949 0.84762 1.48091 1.41323 1.34153 1.08881 1.18000 0.79113 0.79412 0.87628 1.90745 1.62567 1.57771 1.33314 1.20905 1.06035 0.94873 0.96979 1.23389 0.90368 1.01016 0.86766 1.67889 1.13250 1.16978 1.20830 1.23319 0.92972 0.86973 0.98778 1.21923 1.05485 0.88015 0.96922 1.98381 1.94679 1.12542 1.95207 1.21633 0.92206 0.95217 0.95605 1.22160 0.94662 1.00045 0.84673 1.21587 0.94136 0.99745 0.95657 0.92964 1.20897 0.97172 0.94110 0.84740 1.42544 1.65128 1.29164 1.01672 1.19527 1.26794 1.06062 0.84971 0.90815 1.25403 1.01652 0.98050 1.00905 1.69792 1.43868 1.18472 1.28682 0.85307 0.76704 0.78020 0.80712 1.21933 1.22548 1.19530 0.92815 0.90611 0.93783 0.87600 0.92902 0.88716 0.89465 0.80542 0.79868 0.82317 0.89028 0.90498 0.95292 0.95244 0.79720 0.94350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.81 71.98 0.63 -2.27 16 2 C -0.08 -1.58 2.23 -10.77 -0.02 -1.60 16 3 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 4 C -0.12 -2.10 5.36 30.67 0.16 -1.94 16 5 C 0.11 2.10 6.44 86.36 0.56 2.65 16 6 N -0.59 -15.03 2.97 -822.29 -2.44 -17.47 16 7 C 0.57 16.97 7.35 86.79 0.64 17.60 16 8 O -0.56 -19.11 16.36 -3.89 -0.06 -19.17 16 9 C -0.18 -5.46 5.17 -20.00 -0.10 -5.56 16 10 C 0.14 4.36 8.55 85.04 0.73 5.09 16 11 N -0.48 -16.07 10.34 -194.67 -2.01 -18.09 16 12 C 0.14 4.07 10.97 84.72 0.93 5.00 16 13 C -0.09 -2.63 6.34 22.38 0.14 -2.49 16 14 Cl -0.04 -0.89 28.98 -2.72 -0.08 -0.97 16 15 C -0.02 -0.57 9.60 22.75 0.22 -0.35 16 16 C 0.11 2.92 3.97 86.36 0.34 3.26 16 17 C -0.09 -2.59 1.92 -10.71 -0.02 -2.61 16 18 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 19 C 0.16 5.61 5.41 86.38 0.47 6.07 16 20 N -0.74 -35.23 5.38 -343.45 -1.85 -37.08 16 21 C -0.24 -12.91 9.99 84.03 0.84 -12.07 16 22 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 23 C -0.07 -3.73 5.50 84.86 0.47 -3.27 16 24 N -0.96 -56.66 13.06 21.65 0.28 -56.37 16 25 Si 0.96 45.36 29.55 68.60 2.03 47.39 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 27 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 29 H 0.05 1.20 6.30 -2.39 -0.02 1.18 16 30 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.86 6.99 -2.38 -0.02 1.84 16 36 H 0.18 4.82 6.49 -2.91 -0.02 4.80 16 37 H 0.18 4.65 8.06 -2.91 -0.02 4.62 16 38 H 0.16 4.15 8.06 -2.91 -0.02 4.12 16 39 H 0.09 2.21 8.12 -2.38 -0.02 2.19 16 40 H 0.08 2.54 3.85 -2.39 -0.01 2.53 16 41 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.03 1.07 6.15 -2.39 -0.01 1.06 16 43 H 0.37 19.02 6.89 -92.71 -0.64 18.38 16 44 H 0.25 14.43 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -66.15 367.78 2.24 -63.91 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 0.39 Total: 30.33 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 5.98 Total: 7.53 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -6.02 Total: -129.01 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.06 Total: -19.17 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -66.15 2.24 -63.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133165960.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.972 kcal (2) G-P(sol) polarization free energy of solvation -66.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds