Wall clock time and date at job start Tue Mar 31 2020 20:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.45046 * 2 1 4 4 C 1.53037 * 109.45644 * 240.03433 * 2 1 3 5 5 C 1.53195 * 109.31713 * 301.34595 * 4 2 1 6 6 N 1.46920 * 108.77326 * 305.36773 * 5 4 2 7 7 C 1.34782 * 120.62850 * 233.60786 * 6 5 4 8 8 O 1.21561 * 119.99815 * 174.92511 * 7 6 5 9 9 C 1.47833 * 120.00005 * 354.92217 * 7 6 5 10 10 C 1.39560 * 120.55767 * 319.95409 * 9 7 6 11 11 N 1.31661 * 120.59898 * 179.97438 * 10 9 7 12 12 C 1.31950 * 121.89110 * 359.97438 * 11 10 9 13 13 C 1.38423 * 121.06407 * 0.02562 * 12 11 10 14 14 Cl 1.73600 * 120.35920 * 179.97438 * 13 12 11 15 15 C 1.38512 * 119.27934 * 359.70574 * 13 12 11 16 16 C 1.46927 * 118.74106 * 53.60736 * 6 5 4 17 17 C 1.53043 * 109.45965 * 119.97129 * 2 1 3 18 18 H 1.09000 * 109.50002 * 178.60690 * 17 2 1 19 19 C 1.53000 * 109.52147 * 298.68602 * 17 2 1 20 20 N 1.46502 * 109.47339 * 184.85664 * 19 17 2 21 21 C 1.36935 * 120.00144 * 179.97438 * 20 19 17 22 22 H 1.07993 * 120.00381 * 359.97438 * 21 20 19 23 23 C 1.38809 * 119.99648 * 179.97438 * 21 20 19 24 24 N 1.31623 * 120.00582 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99792 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47432 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46932 * 120.00110 * 25 23 21 28 28 H 1.48495 * 109.47230 * 239.99844 * 25 23 21 29 29 H 1.09007 * 109.46981 * 300.03338 * 1 2 3 30 30 H 1.08999 * 109.47570 * 60.03036 * 1 2 3 31 31 H 1.08994 * 109.47633 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.50214 * 61.30023 * 4 2 1 33 33 H 1.09008 * 109.49785 * 181.39437 * 4 2 1 34 34 H 1.09003 * 109.58212 * 65.15494 * 5 4 2 35 35 H 1.08996 * 109.58627 * 185.43404 * 5 4 2 36 36 H 1.08006 * 119.69824 * 359.94907 * 10 9 7 37 37 H 1.08004 * 119.46483 * 180.02562 * 12 11 10 38 38 H 1.08002 * 120.86633 * 180.29593 * 15 13 12 39 39 H 1.09002 * 109.58663 * 186.60514 * 16 6 5 40 40 H 1.08998 * 109.58824 * 66.18126 * 16 6 5 41 41 H 1.09006 * 109.47023 * 304.85317 * 19 17 2 42 42 H 1.09002 * 109.47634 * 64.85453 * 19 17 2 43 43 H 0.96999 * 119.99192 * 359.97438 * 20 19 17 44 44 H 0.96994 * 120.00327 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0397 -0.7207 -1.2501 5 6 1.4994 -2.1542 -1.2643 6 7 1.8624 -2.8089 -0.0002 7 6 2.5159 -3.9877 -0.0002 8 8 2.8920 -4.4741 1.0484 9 6 2.7751 -4.6890 -1.2755 10 6 1.8041 -4.7220 -2.2773 11 7 2.0343 -5.3459 -3.4136 12 6 3.1779 -5.9591 -3.6529 13 6 4.1919 -5.9725 -2.7108 14 17 5.6890 -6.7855 -3.0447 15 6 4.0013 -5.3254 -1.5010 16 6 1.4994 -2.1542 1.2641 17 6 2.0398 -0.7209 1.2500 18 1 3.1295 -0.7429 1.2383 19 6 1.5575 0.0190 2.4994 20 7 2.1405 -0.6029 3.6909 21 6 1.8500 -0.1070 4.9338 22 1 1.1915 0.7428 5.0357 23 6 2.4021 -0.6966 6.0626 24 7 3.2044 -1.7326 5.9385 25 14 2.0064 -0.0197 7.7581 26 1 1.0869 1.1389 7.6264 27 1 1.3562 -1.0767 8.5738 28 1 3.2610 0.4164 8.4222 29 1 -0.3633 0.5144 0.8897 30 1 -0.3634 0.5133 -0.8902 31 1 -0.3634 -1.0276 0.0005 32 1 1.6957 -0.1934 -2.1399 33 1 3.1295 -0.7428 -1.2384 34 1 0.4144 -2.1346 -1.3675 35 1 1.9361 -2.7009 -2.1000 36 1 0.8549 -4.2315 -2.1189 37 1 3.3250 -6.4586 -4.5991 38 1 4.7770 -5.3157 -0.7496 39 1 1.9381 -2.7019 2.0983 40 1 0.4145 -2.1348 1.3673 41 1 1.8673 1.0627 2.4458 42 1 0.4703 -0.0348 2.5566 43 1 2.7323 -1.3659 3.5992 44 1 3.5904 -2.1444 6.7273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133165962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:15 Heat of formation + Delta-G solvation = 10.157285 kcal Electronic energy + Delta-G solvation = -27074.535300 eV Core-core repulsion = 23246.086610 eV Total energy + Delta-G solvation = -3828.448690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.25376 -39.85798 -38.07654 -37.07695 -35.07346 -33.69274 -32.96013 -32.04270 -31.53711 -29.81184 -27.76634 -26.14634 -25.21974 -24.12818 -23.87875 -23.14342 -21.26079 -20.35297 -18.59081 -17.82417 -17.49515 -17.02278 -16.97268 -16.12718 -15.46751 -15.16414 -15.07408 -14.97096 -14.56744 -14.24591 -13.83690 -13.68157 -13.58269 -13.29876 -13.09287 -12.98371 -12.72226 -12.55193 -12.42821 -11.92867 -11.70999 -11.65551 -11.28933 -11.12733 -10.93391 -10.82345 -10.71201 -10.53868 -10.30807 -10.25491 -10.20437 -9.93609 -9.73229 -9.60947 -9.35296 -8.85250 -8.57800 -6.88546 -5.71586 -3.01452 0.19036 0.55895 1.52360 2.54230 2.82255 3.23937 3.45784 3.50809 3.53580 3.83187 4.12178 4.19804 4.32719 4.56241 4.63679 4.67404 4.75331 4.79252 4.90496 5.10976 5.18109 5.24313 5.34418 5.46433 5.51133 5.57770 5.62799 5.64564 5.76260 5.81930 5.87734 5.90326 5.98713 6.10396 6.28305 6.30812 6.32030 6.50407 6.57129 6.75120 6.86896 7.23687 7.31291 7.73462 8.04727 8.46027 9.57194 10.14900 10.48880 11.50689 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014374 B = 0.002831 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.441591 B = 9889.101379 C =11330.565877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.075 0.925 4 C -0.128 4.128 5 C 0.094 3.906 6 N -0.600 5.600 7 C 0.557 3.443 8 O -0.514 6.514 9 C -0.160 4.160 10 C 0.132 3.868 11 N -0.469 5.469 12 C 0.129 3.871 13 C -0.094 4.094 14 Cl -0.046 7.046 15 C -0.015 4.015 16 C 0.120 3.880 17 C -0.102 4.102 18 H 0.074 0.926 19 C 0.161 3.839 20 N -0.734 5.734 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.929 5.929 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.172 0.828 37 H 0.170 0.830 38 H 0.156 0.844 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.021 0.979 42 H 0.023 0.977 43 H 0.385 0.615 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.780 -5.010 -24.828 25.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.166 4.166 5 C -0.029 4.029 6 N -0.333 5.333 7 C 0.343 3.657 8 O -0.389 6.389 9 C -0.165 4.165 10 C -0.026 4.026 11 N -0.177 5.177 12 C -0.029 4.029 13 C -0.123 4.123 14 Cl -0.017 7.017 15 C -0.042 4.042 16 C -0.001 4.001 17 C -0.122 4.122 18 H 0.092 0.908 19 C 0.033 3.967 20 N -0.378 5.378 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.189 0.811 37 H 0.187 0.813 38 H 0.174 0.826 39 H 0.123 0.877 40 H 0.091 0.909 41 H 0.039 0.961 42 H 0.041 0.959 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.174 -5.253 -24.780 25.424 hybrid contribution 0.879 0.073 1.546 1.780 sum -1.294 -5.180 -23.234 23.840 Atomic orbital electron populations 1.21993 0.95133 1.01977 1.01937 1.21081 0.96075 0.99481 0.93782 0.90693 1.21944 1.01235 0.94772 0.98697 1.22127 1.00592 0.94189 0.85944 1.48062 1.56749 1.20276 1.08221 1.17973 0.78580 0.81255 0.87915 1.90906 1.50013 1.65804 1.32157 1.21075 0.96085 1.02451 0.96903 1.23300 0.98884 0.93134 0.87294 1.67900 1.20404 1.08245 1.21194 1.22994 0.87058 0.94366 0.98472 1.21991 0.91103 1.02037 0.97210 1.98405 1.30890 1.77354 1.95074 1.21656 0.96712 0.90720 0.95143 1.21842 1.00119 0.93109 0.85055 1.21693 1.00966 0.94240 0.95276 0.90753 1.20679 0.96012 0.94743 0.85300 1.42433 1.57059 1.37516 1.00822 1.19232 1.23391 1.10873 0.83741 0.91191 1.24758 1.00054 0.98289 0.97821 1.69682 1.35576 1.24042 1.28421 0.86146 0.77384 0.77959 0.84856 1.20606 1.21883 1.21917 0.91681 0.93057 0.92459 0.90649 0.91474 0.90492 0.89909 0.81094 0.81293 0.82620 0.87662 0.90898 0.96126 0.95882 0.78118 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.11 37.16 0.30 -1.28 16 2 C -0.09 -0.97 2.71 -90.58 -0.25 -1.22 16 3 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -1.19 5.62 -26.61 -0.15 -1.34 16 5 C 0.09 0.86 4.43 -3.71 -0.02 0.84 16 6 N -0.60 -7.79 2.97 -173.89 -0.52 -8.31 16 7 C 0.56 8.16 7.35 -12.33 -0.09 8.07 16 8 O -0.51 -9.98 16.36 5.31 0.09 -9.89 16 9 C -0.16 -1.82 5.16 -104.83 -0.54 -2.36 16 10 C 0.13 1.23 8.55 -17.13 -0.15 1.09 16 11 N -0.47 -4.39 10.34 -12.88 -0.13 -4.52 16 12 C 0.13 1.05 10.97 -17.43 -0.19 0.86 16 13 C -0.09 -0.85 6.34 -39.41 -0.25 -1.10 16 14 Cl -0.05 -0.38 28.98 -51.86 -1.50 -1.88 16 15 C -0.02 -0.17 9.61 -38.83 -0.37 -0.54 16 16 C 0.12 1.89 5.06 -3.71 -0.02 1.87 16 17 C -0.10 -1.58 2.15 -90.50 -0.19 -1.78 16 18 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 19 C 0.16 3.11 5.19 -4.04 -0.02 3.09 16 20 N -0.73 -18.58 5.38 -59.91 -0.32 -18.91 16 21 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -28.77 13.06 55.49 0.72 -28.04 16 25 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 H 0.06 0.75 6.58 -51.93 -0.34 0.41 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.58 4.98 -51.93 -0.26 0.32 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.08 0.58 6.68 -51.93 -0.35 0.23 16 35 H 0.08 0.66 4.68 -51.93 -0.24 0.41 16 36 H 0.17 1.27 6.53 -52.48 -0.34 0.93 16 37 H 0.17 0.93 8.06 -52.48 -0.42 0.50 16 38 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.11 2.13 6.19 -51.93 -0.32 1.80 16 40 H 0.07 1.09 6.69 -51.93 -0.35 0.74 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.02 0.44 6.73 -51.93 -0.35 0.09 16 43 H 0.38 10.47 6.89 -40.82 -0.28 10.19 16 44 H 0.25 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 361.77 15.07 5.45 5.45 Total: -1.00 -33.35 361.77 -9.18 -42.53 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.76 Total: 7.10 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -2.18 Total: -1.20 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.25 Total: -59.78 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.50 Total: -1.88 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.35 -9.18 -42.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133165962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.688 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds