Wall clock time and date at job start Tue Mar 31 2020 20:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.45046 * 2 1 4 4 C 1.53037 * 109.45644 * 240.03433 * 2 1 3 5 5 C 1.53195 * 109.31713 * 301.34595 * 4 2 1 6 6 N 1.46920 * 108.77326 * 305.36773 * 5 4 2 7 7 C 1.34782 * 120.62850 * 233.60786 * 6 5 4 8 8 O 1.21561 * 119.99815 * 174.92511 * 7 6 5 9 9 C 1.47833 * 120.00005 * 354.92217 * 7 6 5 10 10 C 1.39560 * 120.55767 * 319.95409 * 9 7 6 11 11 N 1.31661 * 120.59898 * 179.97438 * 10 9 7 12 12 C 1.31950 * 121.89110 * 359.97438 * 11 10 9 13 13 C 1.38423 * 121.06407 * 0.02562 * 12 11 10 14 14 Cl 1.73600 * 120.35920 * 179.97438 * 13 12 11 15 15 C 1.38512 * 119.27934 * 359.70574 * 13 12 11 16 16 C 1.46927 * 118.74106 * 53.60736 * 6 5 4 17 17 C 1.53043 * 109.45965 * 119.97129 * 2 1 3 18 18 H 1.09000 * 109.50002 * 178.60690 * 17 2 1 19 19 C 1.53000 * 109.52147 * 298.68602 * 17 2 1 20 20 N 1.46502 * 109.47339 * 184.85664 * 19 17 2 21 21 C 1.36935 * 120.00144 * 179.97438 * 20 19 17 22 22 H 1.07993 * 120.00381 * 359.97438 * 21 20 19 23 23 C 1.38809 * 119.99648 * 179.97438 * 21 20 19 24 24 N 1.31623 * 120.00582 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99792 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47432 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46932 * 120.00110 * 25 23 21 28 28 H 1.48495 * 109.47230 * 239.99844 * 25 23 21 29 29 H 1.09007 * 109.46981 * 300.03338 * 1 2 3 30 30 H 1.08999 * 109.47570 * 60.03036 * 1 2 3 31 31 H 1.08994 * 109.47633 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.50214 * 61.30023 * 4 2 1 33 33 H 1.09008 * 109.49785 * 181.39437 * 4 2 1 34 34 H 1.09003 * 109.58212 * 65.15494 * 5 4 2 35 35 H 1.08996 * 109.58627 * 185.43404 * 5 4 2 36 36 H 1.08006 * 119.69824 * 359.94907 * 10 9 7 37 37 H 1.08004 * 119.46483 * 180.02562 * 12 11 10 38 38 H 1.08002 * 120.86633 * 180.29593 * 15 13 12 39 39 H 1.09002 * 109.58663 * 186.60514 * 16 6 5 40 40 H 1.08998 * 109.58824 * 66.18126 * 16 6 5 41 41 H 1.09006 * 109.47023 * 304.85317 * 19 17 2 42 42 H 1.09002 * 109.47634 * 64.85453 * 19 17 2 43 43 H 0.96999 * 119.99192 * 359.97438 * 20 19 17 44 44 H 0.96994 * 120.00327 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0397 -0.7207 -1.2501 5 6 1.4994 -2.1542 -1.2643 6 7 1.8624 -2.8089 -0.0002 7 6 2.5159 -3.9877 -0.0002 8 8 2.8920 -4.4741 1.0484 9 6 2.7751 -4.6890 -1.2755 10 6 1.8041 -4.7220 -2.2773 11 7 2.0343 -5.3459 -3.4136 12 6 3.1779 -5.9591 -3.6529 13 6 4.1919 -5.9725 -2.7108 14 17 5.6890 -6.7855 -3.0447 15 6 4.0013 -5.3254 -1.5010 16 6 1.4994 -2.1542 1.2641 17 6 2.0398 -0.7209 1.2500 18 1 3.1295 -0.7429 1.2383 19 6 1.5575 0.0190 2.4994 20 7 2.1405 -0.6029 3.6909 21 6 1.8500 -0.1070 4.9338 22 1 1.1915 0.7428 5.0357 23 6 2.4021 -0.6966 6.0626 24 7 3.2044 -1.7326 5.9385 25 14 2.0064 -0.0197 7.7581 26 1 1.0869 1.1389 7.6264 27 1 1.3562 -1.0767 8.5738 28 1 3.2610 0.4164 8.4222 29 1 -0.3633 0.5144 0.8897 30 1 -0.3634 0.5133 -0.8902 31 1 -0.3634 -1.0276 0.0005 32 1 1.6957 -0.1934 -2.1399 33 1 3.1295 -0.7428 -1.2384 34 1 0.4144 -2.1346 -1.3675 35 1 1.9361 -2.7009 -2.1000 36 1 0.8549 -4.2315 -2.1189 37 1 3.3250 -6.4586 -4.5991 38 1 4.7770 -5.3157 -0.7496 39 1 1.9381 -2.7019 2.0983 40 1 0.4145 -2.1348 1.3673 41 1 1.8673 1.0627 2.4458 42 1 0.4703 -0.0348 2.5566 43 1 2.7323 -1.3659 3.5992 44 1 3.5904 -2.1444 6.7273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133165962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:13 Heat of formation + Delta-G solvation = -12.014481 kcal Electronic energy + Delta-G solvation = -27075.496740 eV Core-core repulsion = 23246.086610 eV Total energy + Delta-G solvation = -3829.410129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.18331 -40.80411 -39.25690 -37.77709 -36.69311 -35.07555 -33.77418 -33.50534 -32.56818 -31.33577 -28.76959 -27.55491 -26.33716 -25.19314 -24.82247 -24.59686 -22.60061 -21.45807 -19.77784 -18.98592 -18.70957 -18.25716 -17.84518 -17.20493 -16.79035 -16.37365 -16.26567 -16.00402 -15.68312 -15.40251 -15.28883 -14.96775 -14.53580 -14.48362 -14.46008 -14.18995 -13.87352 -13.61320 -13.26908 -13.05513 -12.89044 -12.84571 -12.63756 -12.46226 -12.34696 -12.13138 -12.01552 -11.90954 -11.75029 -11.61101 -11.28402 -11.20866 -11.08393 -10.94137 -10.67941 -10.10823 -9.68160 -9.00461 -7.94847 -5.25091 -0.58462 -0.22586 0.80769 1.45048 1.46746 1.49289 1.56866 1.78706 2.42533 2.54968 3.07446 3.31694 3.38364 3.48041 3.53699 3.66423 3.77773 3.83882 3.89107 4.04284 4.06117 4.22172 4.27758 4.38056 4.48626 4.56987 4.63164 4.66238 4.70146 4.76835 4.82755 4.91417 4.98935 5.10685 5.14051 5.17729 5.26666 5.31318 5.39554 5.44573 5.49259 5.62329 6.23901 6.26029 6.50963 6.93433 7.31432 8.08341 8.29865 9.28761 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014374 B = 0.002831 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.441591 B = 9889.101379 C =11330.565877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 H 0.079 0.921 4 C -0.123 4.123 5 C 0.088 3.912 6 N -0.594 5.594 7 C 0.553 3.447 8 O -0.578 6.578 9 C -0.173 4.173 10 C 0.145 3.855 11 N -0.472 5.472 12 C 0.143 3.857 13 C -0.094 4.094 14 Cl -0.039 7.039 15 C -0.026 4.026 16 C 0.129 3.871 17 C -0.091 4.091 18 H 0.047 0.953 19 C 0.159 3.841 20 N -0.749 5.749 21 C -0.242 4.242 22 H 0.080 0.920 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.975 3.025 26 H -0.261 1.261 27 H -0.295 1.295 28 H -0.294 1.294 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.114 0.886 33 H 0.054 0.946 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.195 0.805 37 H 0.202 0.798 38 H 0.142 0.858 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.023 0.977 42 H 0.034 0.966 43 H 0.370 0.630 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.644 -3.969 -28.185 28.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.098 4.098 3 H 0.097 0.903 4 C -0.161 4.161 5 C -0.032 4.032 6 N -0.325 5.325 7 C 0.341 3.659 8 O -0.458 6.458 9 C -0.179 4.179 10 C -0.012 4.012 11 N -0.181 5.181 12 C -0.015 4.015 13 C -0.123 4.123 14 Cl -0.010 7.010 15 C -0.053 4.053 16 C 0.006 3.994 17 C -0.110 4.110 18 H 0.066 0.934 19 C 0.033 3.967 20 N -0.392 5.392 21 C -0.374 4.374 22 H 0.098 0.902 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.804 3.196 26 H -0.186 1.186 27 H -0.222 1.222 28 H -0.222 1.222 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.132 0.868 33 H 0.073 0.927 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.211 0.789 37 H 0.218 0.782 38 H 0.160 0.840 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.041 0.959 42 H 0.052 0.948 43 H 0.202 0.798 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.083 -4.147 -28.211 28.805 hybrid contribution 1.472 -0.243 2.478 2.892 sum -2.611 -4.391 -25.733 26.235 Atomic orbital electron populations 1.21973 0.93622 1.02406 1.02704 1.21065 0.97211 0.99261 0.92277 0.90254 1.21949 1.00588 0.94734 0.98815 1.22513 1.02549 0.93969 0.84192 1.48105 1.55841 1.19776 1.08739 1.18523 0.77591 0.81398 0.88359 1.90872 1.52723 1.67542 1.34683 1.20778 0.97285 1.03808 0.96013 1.23554 0.98822 0.92420 0.86435 1.68040 1.20705 1.08516 1.20794 1.23516 0.86035 0.92891 0.99025 1.21988 0.91795 1.01894 0.96659 1.98410 1.30555 1.77113 1.94925 1.21648 0.96533 0.91303 0.95799 1.21490 1.00102 0.92695 0.85090 1.21550 0.99286 0.94249 0.95938 0.93427 1.20875 0.96164 0.94752 0.84908 1.42708 1.57084 1.37313 1.02056 1.19694 1.22316 1.10432 0.84949 0.90226 1.25647 1.00665 0.99008 1.01910 1.69873 1.37465 1.25932 1.29027 0.85042 0.77144 0.77614 0.79779 1.18555 1.22196 1.22163 0.93282 0.89965 0.92166 0.86812 0.92679 0.87566 0.88044 0.78876 0.78152 0.84032 0.93026 0.89809 0.95925 0.94817 0.79845 0.94185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.11 71.98 0.58 -2.01 16 2 C -0.08 -1.64 2.71 -10.77 -0.03 -1.67 16 3 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.12 -1.89 5.62 30.67 0.17 -1.71 16 5 C 0.09 1.35 4.43 86.36 0.38 1.73 16 6 N -0.59 -15.44 2.97 -822.32 -2.44 -17.89 16 7 C 0.55 16.98 7.35 86.78 0.64 17.62 16 8 O -0.58 -24.62 16.36 -3.91 -0.06 -24.68 16 9 C -0.17 -3.89 5.16 -20.00 -0.10 -4.00 16 10 C 0.15 2.36 8.55 85.04 0.73 3.09 16 11 N -0.47 -7.30 10.34 -194.67 -2.01 -9.31 16 12 C 0.14 1.91 10.97 84.72 0.93 2.84 16 13 C -0.09 -1.58 6.34 22.38 0.14 -1.43 16 14 Cl -0.04 -0.60 28.98 -2.72 -0.08 -0.68 16 15 C -0.03 -0.56 9.61 22.76 0.22 -0.34 16 16 C 0.13 4.24 5.06 86.36 0.44 4.68 16 17 C -0.09 -2.87 2.15 -10.72 -0.02 -2.89 16 18 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 19 C 0.16 6.29 5.19 86.38 0.45 6.74 16 20 N -0.75 -39.59 5.38 -343.45 -1.85 -41.44 16 21 C -0.24 -13.91 9.99 84.03 0.84 -13.07 16 22 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 23 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 24 N -0.97 -62.94 13.06 21.65 0.28 -62.65 16 25 Si 0.98 47.65 29.55 68.60 2.03 49.68 16 26 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 28 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 29 H 0.05 1.02 6.58 -2.38 -0.02 1.00 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.01 4.98 -2.39 -0.01 1.00 16 32 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.11 1.09 6.68 -2.39 -0.02 1.08 16 35 H 0.10 1.24 4.68 -2.39 -0.01 1.23 16 36 H 0.19 2.17 6.53 -2.91 -0.02 2.15 16 37 H 0.20 1.38 8.06 -2.91 -0.02 1.35 16 38 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 39 H 0.05 2.29 6.19 -2.39 -0.01 2.27 16 40 H 0.08 2.54 6.69 -2.39 -0.02 2.52 16 41 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.03 1.28 6.73 -2.39 -0.02 1.27 16 43 H 0.37 21.56 6.89 -92.71 -0.64 20.92 16 44 H 0.25 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -77.82 361.77 2.10 -75.72 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.40 Total: 26.02 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 5.83 Total: 5.23 kcal Atomic # 7 Polarization: -125.27 SS G_CDS: -6.02 Total: -131.29 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.06 Total: -24.68 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -77.82 2.10 -75.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133165962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.706 kcal (2) G-P(sol) polarization free energy of solvation -77.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds