Wall clock time and date at job start Tue Mar 31 2020 20:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.46376 * 2 1 4 4 C 1.53036 * 109.45188 * 240.03311 * 2 1 3 5 5 C 1.52759 * 109.38592 * 301.22729 * 4 2 1 6 6 N 1.46925 * 109.00674 * 305.59013 * 5 4 2 7 7 C 1.34782 * 120.62608 * 233.58523 * 6 5 4 8 8 O 1.21526 * 119.99615 * 183.53081 * 7 6 5 9 9 C 1.48079 * 120.00491 * 3.52177 * 7 6 5 10 10 N 1.32774 * 119.73637 * 319.26383 * 9 7 6 11 11 C 1.31470 * 121.65389 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.94179 * 0.27867 * 11 10 9 13 13 C 1.38519 * 119.37085 * 359.44317 * 12 11 10 14 14 C 1.38795 * 118.47923 * 0.54537 * 13 12 11 15 15 Cl 1.73598 * 120.48866 * 179.70653 * 14 13 12 16 16 C 1.46928 * 118.74224 * 53.30327 * 6 5 4 17 17 C 1.53037 * 109.45843 * 119.97082 * 2 1 3 18 18 H 1.09003 * 109.49822 * 178.59574 * 17 2 1 19 19 C 1.52998 * 109.52917 * 298.67516 * 17 2 1 20 20 N 1.46499 * 109.47505 * 184.85387 * 19 17 2 21 21 C 1.36942 * 119.99869 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00030 * 359.97438 * 21 20 19 23 23 C 1.38806 * 119.99672 * 180.02562 * 21 20 19 24 24 N 1.31623 * 120.00264 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00009 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47052 * 59.99621 * 25 23 21 27 27 H 1.48497 * 109.47233 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47070 * 299.99691 * 25 23 21 29 29 H 1.09001 * 109.47577 * 300.02655 * 1 2 3 30 30 H 1.09006 * 109.47153 * 60.02724 * 1 2 3 31 31 H 1.08996 * 109.47209 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.49698 * 61.30461 * 4 2 1 33 33 H 1.09007 * 109.49912 * 181.36792 * 4 2 1 34 34 H 1.09002 * 109.51120 * 185.70607 * 5 4 2 35 35 H 1.09002 * 109.43230 * 65.42358 * 5 4 2 36 36 H 1.08001 * 119.52378 * 180.02562 * 11 10 9 37 37 H 1.07997 * 120.31136 * 179.70402 * 12 11 10 38 38 H 1.08002 * 120.75833 * 180.26289 * 13 12 11 39 39 H 1.09001 * 109.58050 * 66.43330 * 16 6 5 40 40 H 1.08998 * 109.58503 * 186.85449 * 16 6 5 41 41 H 1.09004 * 109.47251 * 304.85559 * 19 17 2 42 42 H 1.09001 * 109.46721 * 64.85347 * 19 17 2 43 43 H 0.96992 * 119.99924 * 0.02562 * 20 19 17 44 44 H 0.97003 * 119.99771 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7208 -1.2501 5 6 1.5040 -2.1513 -1.2643 6 7 1.8620 -2.8089 -0.0001 7 6 2.5157 -3.9875 -0.0003 8 8 2.7495 -4.5528 1.0498 9 6 2.9490 -4.5938 -1.2799 10 7 2.1434 -4.5520 -2.3345 11 6 2.4896 -5.0786 -3.4884 12 6 3.7154 -5.7067 -3.6462 13 6 4.5902 -5.7685 -2.5740 14 6 4.1992 -5.2045 -1.3675 15 17 5.2514 -5.2589 0.0122 16 6 1.4993 -2.1542 1.2642 17 6 2.0397 -0.7208 1.2500 18 1 3.1295 -0.7431 1.2382 19 6 1.5577 0.0190 2.4994 20 7 2.1407 -0.6030 3.6908 21 6 1.8496 -0.1076 4.9338 22 1 1.1905 0.7419 5.0359 23 6 2.4024 -0.6967 6.0626 24 7 3.2061 -1.7316 5.9382 25 14 2.0059 -0.0206 7.7582 26 1 0.5417 -0.0999 7.9928 27 1 2.7158 -0.8204 8.7885 28 1 2.4446 1.3958 7.8414 29 1 -0.3634 0.5142 0.8897 30 1 -0.3634 0.5134 -0.8903 31 1 -0.3633 -1.0276 0.0005 32 1 1.6955 -0.1934 -2.1398 33 1 3.1294 -0.7425 -1.2387 34 1 1.9458 -2.6972 -2.0980 35 1 0.4195 -2.1315 -1.3716 36 1 1.8076 -5.0246 -4.3240 37 1 3.9874 -6.1400 -4.5973 38 1 5.5525 -6.2487 -2.6732 39 1 0.4143 -2.1346 1.3674 40 1 1.9378 -2.7019 2.0983 41 1 1.8676 1.0627 2.4459 42 1 0.4705 -0.0346 2.5566 43 1 2.7329 -1.3656 3.5991 44 1 3.5921 -2.1435 6.7271 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133255230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:21 Heat of formation + Delta-G solvation = 18.706977 kcal Electronic energy + Delta-G solvation = -27475.934699 eV Core-core repulsion = 23647.856752 eV Total energy + Delta-G solvation = -3828.077947 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.10928 -39.68772 -37.90607 -36.76016 -34.90967 -33.60918 -32.82538 -31.85638 -31.49665 -29.74649 -27.64258 -26.08422 -25.00165 -24.04596 -23.74608 -23.05625 -21.13993 -20.42624 -18.47530 -17.53533 -17.32673 -16.91595 -16.69074 -16.12826 -15.41303 -15.08670 -14.90943 -14.82502 -14.31685 -14.22561 -13.85928 -13.64804 -13.45448 -13.07326 -12.92949 -12.81136 -12.64565 -12.39050 -12.25162 -11.76535 -11.56990 -11.28952 -11.18330 -10.96735 -10.86030 -10.73793 -10.58138 -10.33879 -10.28395 -10.15161 -10.12049 -9.91788 -9.57070 -9.41100 -9.28992 -8.78364 -8.36541 -6.82399 -5.65692 -2.95328 0.27541 0.62305 1.82626 2.60600 2.92813 3.29378 3.50260 3.54126 3.55848 3.91127 4.27321 4.29597 4.43420 4.65314 4.78510 4.82937 4.90068 4.97736 4.99995 5.26812 5.36062 5.41752 5.47784 5.59763 5.62059 5.68041 5.73914 5.81384 5.88309 5.98709 6.00218 6.04463 6.09433 6.21640 6.39512 6.41904 6.43699 6.63647 6.71767 6.83744 6.95934 7.24361 7.51005 7.77657 8.21966 8.51996 9.62838 10.21294 10.55506 11.56477 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.013873 B = 0.003456 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.852428 B = 8099.305224 C = 9689.157518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.131 4.131 5 C 0.101 3.899 6 N -0.589 5.589 7 C 0.563 3.437 8 O -0.503 6.503 9 C 0.102 3.898 10 N -0.439 5.439 11 C 0.095 3.905 12 C -0.144 4.144 13 C -0.073 4.073 14 C -0.047 4.047 15 Cl -0.018 7.018 16 C 0.120 3.880 17 C -0.102 4.102 18 H 0.073 0.927 19 C 0.161 3.839 20 N -0.733 5.733 21 C -0.242 4.242 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.929 5.929 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.287 1.287 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.170 0.830 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.020 0.980 42 H 0.023 0.977 43 H 0.385 0.615 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 -5.798 -26.583 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.170 4.170 5 C -0.022 4.022 6 N -0.321 5.321 7 C 0.347 3.653 8 O -0.376 6.376 9 C -0.037 4.037 10 N -0.151 5.151 11 C -0.065 4.065 12 C -0.165 4.165 13 C -0.099 4.099 14 C -0.077 4.077 15 Cl 0.012 6.988 16 C -0.001 4.001 17 C -0.122 4.122 18 H 0.091 0.909 19 C 0.033 3.967 20 N -0.378 5.378 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.214 1.214 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.187 0.813 37 H 0.166 0.834 38 H 0.169 0.831 39 H 0.090 0.910 40 H 0.122 0.878 41 H 0.038 0.962 42 H 0.041 0.959 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.685 -5.609 -25.596 26.212 hybrid contribution 0.948 -0.288 0.787 1.265 sum 0.262 -5.897 -24.808 25.501 Atomic orbital electron populations 1.21982 0.95190 1.02056 1.01719 1.21073 0.96062 0.99308 0.93933 0.90920 1.21925 1.00955 0.95672 0.98420 1.22015 1.00814 0.92995 0.86389 1.47970 1.55577 1.20201 1.08360 1.17744 0.78823 0.81801 0.86955 1.90917 1.54626 1.61143 1.30918 1.21252 0.90469 0.97701 0.94242 1.67937 1.32529 1.15693 0.98985 1.23012 0.95120 0.93281 0.95039 1.22349 0.94737 0.99559 0.99813 1.21597 1.00889 0.96895 0.90551 1.22033 0.93420 1.00676 0.91591 1.98465 1.63641 1.96607 1.40136 1.21821 1.00171 0.92908 0.85197 1.21691 1.00865 0.94342 0.95258 0.90855 1.20674 0.96007 0.94683 0.85322 1.42415 1.57012 1.37557 1.00783 1.19150 1.23393 1.10931 0.83804 0.91324 1.24747 1.00070 0.98312 0.97751 1.69668 1.35454 1.24046 1.28578 0.86295 0.77623 0.77958 0.84448 1.21319 1.21739 1.21376 0.91808 0.93179 0.92358 0.90945 0.91920 0.88302 0.90955 0.81333 0.83387 0.83095 0.91026 0.87805 0.96177 0.95894 0.78111 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.11 37.15 0.30 -1.50 16 2 C -0.08 -1.09 2.71 -90.59 -0.25 -1.34 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.13 -1.46 5.61 -26.84 -0.15 -1.61 16 5 C 0.10 1.19 5.53 -3.93 -0.02 1.17 16 6 N -0.59 -9.11 2.98 -174.06 -0.52 -9.62 16 7 C 0.56 9.55 7.12 -12.22 -0.09 9.46 16 8 O -0.50 -10.44 14.76 5.34 0.08 -10.36 16 9 C 0.10 1.39 5.98 -82.98 -0.50 0.89 16 10 N -0.44 -4.83 7.34 -9.78 -0.07 -4.90 16 11 C 0.09 0.67 11.18 -17.56 -0.20 0.48 16 12 C -0.14 -0.85 10.11 -39.33 -0.40 -1.25 16 13 C -0.07 -0.59 9.98 -39.27 -0.39 -0.98 16 14 C -0.05 -0.57 6.35 -38.94 -0.25 -0.82 16 15 Cl -0.02 -0.25 26.87 -51.86 -1.39 -1.65 16 16 C 0.12 2.12 5.04 -3.71 -0.02 2.10 16 17 C -0.10 -1.72 2.15 -90.50 -0.19 -1.92 16 18 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 19 C 0.16 3.29 5.19 -4.04 -0.02 3.27 16 20 N -0.73 -19.20 5.38 -59.91 -0.32 -19.52 16 21 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -29.29 13.06 55.49 0.72 -28.57 16 25 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H 0.06 0.82 6.58 -51.93 -0.34 0.48 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.71 4.99 -51.93 -0.26 0.45 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.10 1.10 4.61 -51.93 -0.24 0.86 16 35 H 0.07 0.80 6.70 -51.93 -0.35 0.46 16 36 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.15 0.35 8.06 -52.49 -0.42 -0.08 16 38 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.07 1.22 6.69 -51.93 -0.35 0.87 16 40 H 0.10 2.25 6.23 -51.93 -0.32 1.93 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.47 6.73 -51.93 -0.35 0.12 16 43 H 0.38 10.80 6.89 -40.82 -0.28 10.52 16 44 H 0.26 7.81 8.31 -40.82 -0.34 7.48 16 LS Contribution 360.38 15.07 5.43 5.43 Total: -1.00 -34.80 360.38 -9.35 -44.15 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.84 Total: 6.58 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -2.41 Total: 0.37 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -0.19 Total: -62.61 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.39 Total: -1.65 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.80 -9.35 -44.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133255230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.855 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds