Wall clock time and date at job start Tue Mar 31 2020 20:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.46376 * 2 1 4 4 C 1.53036 * 109.45188 * 240.03311 * 2 1 3 5 5 C 1.52759 * 109.38592 * 301.22729 * 4 2 1 6 6 N 1.46925 * 109.00674 * 305.59013 * 5 4 2 7 7 C 1.34782 * 120.62608 * 233.58523 * 6 5 4 8 8 O 1.21526 * 119.99615 * 183.53081 * 7 6 5 9 9 C 1.48079 * 120.00491 * 3.52177 * 7 6 5 10 10 N 1.32774 * 119.73637 * 319.26383 * 9 7 6 11 11 C 1.31470 * 121.65389 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.94179 * 0.27867 * 11 10 9 13 13 C 1.38519 * 119.37085 * 359.44317 * 12 11 10 14 14 C 1.38795 * 118.47923 * 0.54537 * 13 12 11 15 15 Cl 1.73598 * 120.48866 * 179.70653 * 14 13 12 16 16 C 1.46928 * 118.74224 * 53.30327 * 6 5 4 17 17 C 1.53037 * 109.45843 * 119.97082 * 2 1 3 18 18 H 1.09003 * 109.49822 * 178.59574 * 17 2 1 19 19 C 1.52998 * 109.52917 * 298.67516 * 17 2 1 20 20 N 1.46499 * 109.47505 * 184.85387 * 19 17 2 21 21 C 1.36942 * 119.99869 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00030 * 359.97438 * 21 20 19 23 23 C 1.38806 * 119.99672 * 180.02562 * 21 20 19 24 24 N 1.31623 * 120.00264 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00009 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47052 * 59.99621 * 25 23 21 27 27 H 1.48497 * 109.47233 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47070 * 299.99691 * 25 23 21 29 29 H 1.09001 * 109.47577 * 300.02655 * 1 2 3 30 30 H 1.09006 * 109.47153 * 60.02724 * 1 2 3 31 31 H 1.08996 * 109.47209 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.49698 * 61.30461 * 4 2 1 33 33 H 1.09007 * 109.49912 * 181.36792 * 4 2 1 34 34 H 1.09002 * 109.51120 * 185.70607 * 5 4 2 35 35 H 1.09002 * 109.43230 * 65.42358 * 5 4 2 36 36 H 1.08001 * 119.52378 * 180.02562 * 11 10 9 37 37 H 1.07997 * 120.31136 * 179.70402 * 12 11 10 38 38 H 1.08002 * 120.75833 * 180.26289 * 13 12 11 39 39 H 1.09001 * 109.58050 * 66.43330 * 16 6 5 40 40 H 1.08998 * 109.58503 * 186.85449 * 16 6 5 41 41 H 1.09004 * 109.47251 * 304.85559 * 19 17 2 42 42 H 1.09001 * 109.46721 * 64.85347 * 19 17 2 43 43 H 0.96992 * 119.99924 * 0.02562 * 20 19 17 44 44 H 0.97003 * 119.99771 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7208 -1.2501 5 6 1.5040 -2.1513 -1.2643 6 7 1.8620 -2.8089 -0.0001 7 6 2.5157 -3.9875 -0.0003 8 8 2.7495 -4.5528 1.0498 9 6 2.9490 -4.5938 -1.2799 10 7 2.1434 -4.5520 -2.3345 11 6 2.4896 -5.0786 -3.4884 12 6 3.7154 -5.7067 -3.6462 13 6 4.5902 -5.7685 -2.5740 14 6 4.1992 -5.2045 -1.3675 15 17 5.2514 -5.2589 0.0122 16 6 1.4993 -2.1542 1.2642 17 6 2.0397 -0.7208 1.2500 18 1 3.1295 -0.7431 1.2382 19 6 1.5577 0.0190 2.4994 20 7 2.1407 -0.6030 3.6908 21 6 1.8496 -0.1076 4.9338 22 1 1.1905 0.7419 5.0359 23 6 2.4024 -0.6967 6.0626 24 7 3.2061 -1.7316 5.9382 25 14 2.0059 -0.0206 7.7582 26 1 0.5417 -0.0999 7.9928 27 1 2.7158 -0.8204 8.7885 28 1 2.4446 1.3958 7.8414 29 1 -0.3634 0.5142 0.8897 30 1 -0.3634 0.5134 -0.8903 31 1 -0.3633 -1.0276 0.0005 32 1 1.6955 -0.1934 -2.1398 33 1 3.1294 -0.7425 -1.2387 34 1 1.9458 -2.6972 -2.0980 35 1 0.4195 -2.1315 -1.3716 36 1 1.8076 -5.0246 -4.3240 37 1 3.9874 -6.1400 -4.5973 38 1 5.5525 -6.2487 -2.6732 39 1 0.4143 -2.1346 1.3674 40 1 1.9378 -2.7019 2.0983 41 1 1.8676 1.0627 2.4459 42 1 0.4705 -0.0346 2.5566 43 1 2.7329 -1.3656 3.5991 44 1 3.5921 -2.1435 6.7271 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133255230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:18 Heat of formation + Delta-G solvation = -4.783112 kcal Electronic energy + Delta-G solvation = -27476.953305 eV Core-core repulsion = 23647.856752 eV Total energy + Delta-G solvation = -3829.096554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.06987 -40.71544 -39.17703 -37.71449 -36.64735 -34.99832 -33.62074 -33.51192 -32.37915 -31.42250 -28.76284 -27.57179 -26.27520 -24.98572 -24.86538 -24.47715 -22.58492 -21.57097 -19.78055 -18.95162 -18.55599 -18.14112 -17.46919 -17.24372 -16.79960 -16.40145 -16.26211 -15.82888 -15.69603 -15.32086 -15.19340 -15.02098 -14.51709 -14.43534 -14.38420 -14.06384 -13.80487 -13.48594 -13.29340 -13.04652 -12.83495 -12.78300 -12.63054 -12.48950 -12.29242 -12.16941 -12.02595 -11.90598 -11.73612 -11.39758 -11.37349 -11.23588 -10.93060 -10.88322 -10.40127 -10.12543 -9.60819 -9.00670 -7.94031 -5.24808 -0.50517 -0.03064 0.94795 1.44139 1.48839 1.51104 1.55031 1.79965 2.52045 2.55276 2.99367 3.38407 3.53762 3.62618 3.68217 3.82261 3.84386 3.87221 4.06390 4.10883 4.22819 4.28758 4.33944 4.43495 4.54876 4.59226 4.74593 4.78640 4.80111 4.83549 4.92371 4.93718 4.99631 5.10409 5.16083 5.24350 5.28699 5.37424 5.42210 5.47893 5.52140 5.60835 6.25791 6.29074 6.55064 6.99562 7.31288 8.07895 8.30346 9.29172 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.013873 B = 0.003456 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.852428 B = 8099.305224 C = 9689.157518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 H 0.082 0.918 4 C -0.124 4.124 5 C 0.098 3.902 6 N -0.588 5.588 7 C 0.552 3.448 8 O -0.560 6.560 9 C 0.074 3.926 10 N -0.454 5.454 11 C 0.100 3.900 12 C -0.114 4.114 13 C -0.072 4.072 14 C -0.065 4.065 15 Cl -0.055 7.055 16 C 0.130 3.870 17 C -0.089 4.089 18 H 0.048 0.952 19 C 0.161 3.839 20 N -0.749 5.749 21 C -0.247 4.247 22 H 0.080 0.920 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.978 3.022 26 H -0.276 1.276 27 H -0.297 1.297 28 H -0.274 1.274 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.112 0.888 33 H 0.052 0.948 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.214 0.786 37 H 0.200 0.800 38 H 0.176 0.824 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.025 0.975 42 H 0.032 0.968 43 H 0.370 0.630 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 -4.997 -31.031 31.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.098 4.098 3 H 0.101 0.899 4 C -0.162 4.162 5 C -0.022 4.022 6 N -0.319 5.319 7 C 0.338 3.662 8 O -0.438 6.438 9 C -0.063 4.063 10 N -0.166 5.166 11 C -0.060 4.060 12 C -0.134 4.134 13 C -0.098 4.098 14 C -0.096 4.096 15 Cl -0.026 7.026 16 C 0.007 3.993 17 C -0.109 4.109 18 H 0.067 0.933 19 C 0.034 3.966 20 N -0.391 5.391 21 C -0.378 4.378 22 H 0.098 0.902 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.806 3.194 26 H -0.202 1.202 27 H -0.224 1.224 28 H -0.200 1.200 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.130 0.870 33 H 0.071 0.929 34 H 0.131 0.869 35 H 0.105 0.895 36 H 0.230 0.770 37 H 0.217 0.783 38 H 0.194 0.806 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.043 0.957 42 H 0.050 0.950 43 H 0.201 0.799 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.991 -4.746 -30.103 30.540 hybrid contribution 1.288 -0.575 1.930 2.391 sum -0.703 -5.321 -28.173 28.679 Atomic orbital electron populations 1.21946 0.93841 1.02027 1.02684 1.21069 0.97073 0.99305 0.92343 0.89946 1.21914 1.00366 0.95120 0.98761 1.22298 1.01799 0.93308 0.84841 1.48073 1.55088 1.20000 1.08734 1.18452 0.77983 0.81754 0.87995 1.90869 1.56778 1.62733 1.33424 1.20665 0.91774 1.00133 0.93710 1.67866 1.32245 1.16990 0.99515 1.23861 0.96278 0.91392 0.94419 1.22930 0.93027 0.96777 1.00639 1.22002 1.02472 0.96003 0.89319 1.22255 0.92916 1.02405 0.91983 1.98446 1.64630 1.96902 1.42646 1.21452 0.99743 0.92858 0.85205 1.21541 0.99254 0.94042 0.96043 0.93332 1.20854 0.96049 0.94795 0.84859 1.42683 1.57043 1.37354 1.02029 1.19638 1.22553 1.10666 0.84963 0.90236 1.25671 1.00550 0.98959 1.01986 1.69876 1.37270 1.25918 1.29186 0.85155 0.77662 0.77488 0.79107 1.20154 1.22375 1.20031 0.93093 0.89965 0.92861 0.87022 0.92905 0.86888 0.89536 0.76962 0.78341 0.80617 0.90673 0.93054 0.95665 0.95046 0.79891 0.94181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.11 71.98 0.58 -2.57 16 2 C -0.08 -1.92 2.71 -10.77 -0.03 -1.95 16 3 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 4 C -0.12 -2.45 5.61 30.53 0.17 -2.27 16 5 C 0.10 2.18 5.53 86.22 0.48 2.66 16 6 N -0.59 -19.01 2.98 -822.87 -2.45 -21.47 16 7 C 0.55 20.08 7.12 86.85 0.62 20.70 16 8 O -0.56 -25.85 14.76 -3.80 -0.06 -25.90 16 9 C 0.07 2.02 5.98 41.90 0.25 2.27 16 10 N -0.45 -8.95 7.34 -184.85 -1.36 -10.31 16 11 C 0.10 0.95 11.18 84.84 0.95 1.90 16 12 C -0.11 -0.74 10.11 22.43 0.23 -0.52 16 13 C -0.07 -0.96 9.98 22.47 0.22 -0.74 16 14 C -0.07 -1.60 6.35 22.69 0.14 -1.45 16 15 Cl -0.06 -1.70 26.87 -2.72 -0.07 -1.77 16 16 C 0.13 4.92 5.04 86.36 0.44 5.36 16 17 C -0.09 -3.14 2.15 -10.72 -0.02 -3.16 16 18 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 19 C 0.16 6.78 5.19 86.38 0.45 7.23 16 20 N -0.75 -41.26 5.38 -343.45 -1.85 -43.11 16 21 C -0.25 -14.61 9.99 84.03 0.84 -13.77 16 22 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 23 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 24 N -0.97 -64.35 13.06 21.65 0.28 -64.07 16 25 Si 0.98 48.68 29.55 68.60 2.03 50.71 16 26 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 27 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 28 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 29 H 0.05 1.22 6.58 -2.39 -0.02 1.20 16 30 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.05 1.19 4.99 -2.39 -0.01 1.18 16 32 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.17 8.14 -2.38 -0.02 1.16 16 34 H 0.11 2.26 4.61 -2.39 -0.01 2.24 16 35 H 0.09 1.70 6.70 -2.39 -0.02 1.68 16 36 H 0.21 0.12 8.06 -2.91 -0.02 0.10 16 37 H 0.20 -0.61 8.06 -2.91 -0.02 -0.63 16 38 H 0.18 1.41 8.06 -2.91 -0.02 1.38 16 39 H 0.08 2.72 6.69 -2.39 -0.02 2.70 16 40 H 0.05 2.49 6.23 -2.39 -0.01 2.48 16 41 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 42 H 0.03 1.29 6.73 -2.39 -0.02 1.27 16 43 H 0.37 22.42 6.89 -92.71 -0.64 21.78 16 44 H 0.25 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -84.57 360.38 2.71 -81.86 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.40 Total: 24.78 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 5.78 Total: 9.28 kcal Atomic # 7 Polarization: -133.58 SS G_CDS: -5.37 Total: -138.95 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.06 Total: -25.90 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.71 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.07 Total: -1.77 kcal Total: -84.57 2.71 -81.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133255230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.074 kcal (2) G-P(sol) polarization free energy of solvation -84.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds