Wall clock time and date at job start Tue Mar 31 2020 20:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.45862 * 2 1 4 4 C 1.53044 * 109.44769 * 119.96183 * 2 1 3 5 5 C 1.52765 * 109.38235 * 181.25850 * 4 2 1 6 6 N 1.46926 * 109.00718 * 305.58919 * 5 4 2 7 7 C 1.34780 * 120.62777 * 233.58749 * 6 5 4 8 8 O 1.21522 * 119.99865 * 183.53080 * 7 6 5 9 9 C 1.48079 * 119.99862 * 3.53134 * 7 6 5 10 10 N 1.32780 * 119.73743 * 319.23837 * 9 7 6 11 11 C 1.31468 * 121.65324 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.94153 * 0.04532 * 11 10 9 13 13 C 1.38510 * 119.37705 * 359.97438 * 12 11 10 14 14 C 1.38806 * 118.47820 * 0.02562 * 13 12 11 15 15 Cl 1.73596 * 120.48927 * 179.72702 * 14 13 12 16 16 C 1.46923 * 118.74208 * 53.30761 * 6 5 4 17 17 C 1.53030 * 109.46457 * 240.02405 * 2 1 3 18 18 H 1.09005 * 109.49640 * 298.58086 * 17 2 1 19 19 C 1.52998 * 109.52642 * 58.65743 * 17 2 1 20 20 N 1.46497 * 109.47793 * 184.85655 * 19 17 2 21 21 C 1.36931 * 120.00411 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00430 * 359.97438 * 21 20 19 23 23 C 1.38821 * 120.00175 * 179.97438 * 21 20 19 24 24 N 1.31616 * 119.99691 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00156 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47312 * 59.99683 * 25 23 21 27 27 H 1.48495 * 109.46962 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46688 * 299.99832 * 25 23 21 29 29 H 1.09007 * 109.46885 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47530 * 299.97202 * 1 2 3 31 31 H 1.08995 * 109.47120 * 59.97976 * 1 2 3 32 32 H 1.09002 * 109.49496 * 301.33107 * 4 2 1 33 33 H 1.08995 * 109.50124 * 61.39594 * 4 2 1 34 34 H 1.08993 * 109.50819 * 185.70269 * 5 4 2 35 35 H 1.09000 * 109.43232 * 65.42322 * 5 4 2 36 36 H 1.07997 * 119.52426 * 180.02562 * 11 10 9 37 37 H 1.08001 * 120.31490 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.76761 * 179.97438 * 13 12 11 39 39 H 1.08994 * 109.58701 * 66.42911 * 16 6 5 40 40 H 1.08999 * 109.58729 * 186.86074 * 16 6 5 41 41 H 1.09006 * 109.47339 * 304.85617 * 19 17 2 42 42 H 1.08998 * 109.47306 * 64.85137 * 19 17 2 43 43 H 0.97006 * 119.99640 * 0.02562 * 20 19 17 44 44 H 0.97005 * 120.00194 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7207 1.2503 5 6 3.5669 -0.6925 1.2647 6 7 4.0677 -1.2491 0.0005 7 6 4.9611 -2.2583 0.0008 8 8 5.4162 -2.6671 -1.0492 9 6 5.3879 -2.8689 1.2805 10 7 5.6172 -2.0955 2.3352 11 6 5.9979 -2.5974 3.4891 12 6 6.1764 -3.9630 3.6484 13 6 5.9490 -4.8078 2.5745 14 6 5.5478 -4.2511 1.3679 15 17 5.2551 -5.2606 -0.0137 16 6 3.5715 -0.6890 -1.2639 17 6 2.0399 -0.7209 -1.2498 18 1 1.6977 -1.7558 -1.2380 19 6 1.5031 -0.0199 -2.4993 20 7 1.8954 -0.7768 -3.6907 21 6 1.5256 -0.3373 -4.9337 22 1 0.9444 0.5672 -5.0359 23 6 1.8978 -1.0543 -6.0626 24 7 2.6065 -2.1564 -5.9381 25 14 1.3939 -0.4544 -7.7584 26 1 1.9567 0.8998 -7.9918 27 1 1.9113 -1.3904 -8.7885 28 1 -0.0876 -0.3960 -7.8427 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5134 0.8902 31 1 -0.3633 0.5141 -0.8898 32 1 1.6569 -0.2205 2.1399 33 1 1.6969 -1.7553 1.2389 34 1 3.9341 -1.2908 2.0984 35 1 3.9096 0.3367 1.3719 36 1 6.1744 -1.9364 4.3247 37 1 6.4899 -4.3644 4.6008 38 1 6.0816 -5.8750 2.6734 39 1 3.9145 0.3404 -1.3670 40 1 3.9418 -1.2851 -2.0979 41 1 0.4158 0.0358 -2.4460 42 1 1.9160 0.9873 -2.5566 43 1 2.4171 -1.5895 -3.5989 44 1 2.8663 -2.6577 -6.7269 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133255232.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:31 Heat of formation + Delta-G solvation = 15.641042 kcal Electronic energy + Delta-G solvation = -27336.875776 eV Core-core repulsion = 23508.664880 eV Total energy + Delta-G solvation = -3828.210896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.08321 -39.55386 -37.81977 -36.76167 -34.94683 -33.71557 -32.92073 -31.87622 -31.49774 -29.73378 -28.19742 -25.91067 -24.80988 -23.90087 -23.10780 -22.96334 -21.16773 -20.38530 -19.36748 -17.69348 -17.35534 -16.93429 -16.68283 -16.08889 -15.36581 -15.07759 -14.79079 -14.57631 -14.21515 -14.03664 -13.82530 -13.74740 -13.43801 -13.03890 -13.01053 -12.86819 -12.57324 -12.41893 -12.21496 -11.81034 -11.62560 -11.43341 -11.28504 -10.93078 -10.83449 -10.73809 -10.54999 -10.36011 -10.29460 -10.14327 -10.10413 -9.92133 -9.56632 -9.39957 -9.29158 -8.78419 -8.41762 -6.81985 -5.65615 -2.95095 0.27303 0.62092 1.82477 2.60263 2.92348 3.29118 3.50289 3.54166 3.55883 3.90539 4.27083 4.29397 4.43234 4.65198 4.78334 4.81556 4.90914 4.96235 4.98530 5.23713 5.36468 5.42846 5.47673 5.60998 5.66398 5.70896 5.74188 5.82226 5.89599 5.98592 6.01773 6.04324 6.09100 6.23394 6.29856 6.38382 6.51512 6.62000 6.70402 6.86817 6.95720 7.24085 7.50169 7.77753 8.21399 8.52036 9.62893 10.21475 10.55675 11.56577 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.013530 B = 0.003418 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.017728 B = 8189.907732 C = 9687.354227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.071 0.929 4 C -0.131 4.131 5 C 0.101 3.899 6 N -0.590 5.590 7 C 0.563 3.437 8 O -0.502 6.502 9 C 0.102 3.898 10 N -0.440 5.440 11 C 0.095 3.905 12 C -0.144 4.144 13 C -0.073 4.073 14 C -0.047 4.047 15 Cl -0.018 7.018 16 C 0.120 3.880 17 C -0.101 4.101 18 H 0.074 0.926 19 C 0.159 3.841 20 N -0.733 5.733 21 C -0.241 4.241 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.929 5.929 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.170 0.830 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.027 0.973 42 H 0.019 0.981 43 H 0.385 0.615 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.906 -2.310 26.584 27.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.090 0.910 4 C -0.169 4.169 5 C -0.021 4.021 6 N -0.322 5.322 7 C 0.347 3.653 8 O -0.376 6.376 9 C -0.037 4.037 10 N -0.152 5.152 11 C -0.064 4.064 12 C -0.165 4.165 13 C -0.099 4.099 14 C -0.077 4.077 15 Cl 0.012 6.988 16 C -0.001 4.001 17 C -0.121 4.121 18 H 0.092 0.908 19 C 0.031 3.969 20 N -0.377 5.377 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.214 1.214 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.187 0.813 37 H 0.166 0.834 38 H 0.169 0.831 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.045 0.955 42 H 0.036 0.964 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.948 -1.627 25.596 26.121 hybrid contribution 0.000 -0.966 -0.789 1.247 sum 4.948 -2.593 24.808 25.429 Atomic orbital electron populations 1.21879 0.95022 1.01897 1.01654 1.21098 0.95909 0.99410 0.93951 0.91013 1.21964 0.95256 1.01303 0.98392 1.21996 0.93751 0.99960 0.86441 1.47982 1.41988 1.33866 1.08370 1.17741 0.80452 0.80135 0.86961 1.90917 1.54585 1.61146 1.30926 1.21251 0.98901 0.89287 0.94234 1.67936 1.09979 1.38248 0.99001 1.23011 0.94657 0.93735 0.95033 1.22348 0.99738 0.94573 0.99799 1.21598 0.96057 1.01725 0.90542 1.22036 1.01901 0.92200 0.91587 1.98465 1.93624 1.66786 1.39960 1.21810 0.93724 0.99318 0.85244 1.21717 0.94358 1.00784 0.95239 0.90800 1.20717 0.96804 0.94053 0.85308 1.42409 1.65313 1.29241 1.00779 1.19149 1.27918 1.06400 0.83803 0.91329 1.24748 1.00846 0.97548 0.97744 1.69665 1.42194 1.17303 1.28583 0.86295 0.77927 0.77649 0.84457 1.21320 1.21743 1.21381 0.92845 0.93270 0.91636 0.90940 0.91873 0.88196 0.91220 0.81325 0.83380 0.83089 0.91272 0.87678 0.95520 0.96359 0.78120 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.81 37.16 0.33 -1.47 16 2 C -0.08 -1.09 2.23 -90.58 -0.20 -1.30 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 4 C -0.13 -1.45 5.34 -26.83 -0.14 -1.60 16 5 C 0.10 1.20 5.99 -3.93 -0.02 1.18 16 6 N -0.59 -9.16 2.98 -174.06 -0.52 -9.68 16 7 C 0.56 9.57 7.12 -12.22 -0.09 9.48 16 8 O -0.50 -10.44 14.75 5.35 0.08 -10.36 16 9 C 0.10 1.39 5.98 -82.98 -0.50 0.89 16 10 N -0.44 -4.83 7.34 -9.78 -0.07 -4.91 16 11 C 0.09 0.68 11.18 -17.56 -0.20 0.48 16 12 C -0.14 -0.85 10.11 -39.33 -0.40 -1.25 16 13 C -0.07 -0.59 9.98 -39.27 -0.39 -0.98 16 14 C -0.05 -0.57 6.35 -38.93 -0.25 -0.82 16 15 Cl -0.02 -0.25 26.87 -51.86 -1.39 -1.64 16 16 C 0.12 2.13 5.51 -3.71 -0.02 2.10 16 17 C -0.10 -1.71 1.92 -90.50 -0.17 -1.88 16 18 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 19 C 0.16 3.24 5.41 -4.04 -0.02 3.22 16 20 N -0.73 -19.16 5.38 -59.91 -0.32 -19.49 16 21 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -29.28 13.06 55.49 0.72 -28.56 16 25 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.87 6.30 -51.93 -0.33 0.54 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.10 1.11 4.61 -51.93 -0.24 0.87 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 38 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.10 2.28 6.23 -51.93 -0.32 1.96 16 41 H 0.03 0.55 6.15 -51.93 -0.32 0.23 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.38 10.79 6.89 -40.82 -0.28 10.51 16 44 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 366.44 15.07 5.52 5.52 Total: -1.00 -34.80 366.44 -9.43 -44.23 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -6.11 Total: 6.31 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -2.32 Total: 0.49 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: -0.19 Total: -62.62 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.39 Total: -1.64 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.80 -9.43 -44.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133255232.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.870 kcal (2) G-P(sol) polarization free energy of solvation -34.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds