Wall clock time and date at job start Tue Mar 31 2020 20:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.45862 * 2 1 4 4 C 1.53044 * 109.44769 * 119.96183 * 2 1 3 5 5 C 1.52765 * 109.38235 * 181.25850 * 4 2 1 6 6 N 1.46926 * 109.00718 * 305.58919 * 5 4 2 7 7 C 1.34780 * 120.62777 * 233.58749 * 6 5 4 8 8 O 1.21522 * 119.99865 * 183.53080 * 7 6 5 9 9 C 1.48079 * 119.99862 * 3.53134 * 7 6 5 10 10 N 1.32780 * 119.73743 * 319.23837 * 9 7 6 11 11 C 1.31468 * 121.65324 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.94153 * 0.04532 * 11 10 9 13 13 C 1.38510 * 119.37705 * 359.97438 * 12 11 10 14 14 C 1.38806 * 118.47820 * 0.02562 * 13 12 11 15 15 Cl 1.73596 * 120.48927 * 179.72702 * 14 13 12 16 16 C 1.46923 * 118.74208 * 53.30761 * 6 5 4 17 17 C 1.53030 * 109.46457 * 240.02405 * 2 1 3 18 18 H 1.09005 * 109.49640 * 298.58086 * 17 2 1 19 19 C 1.52998 * 109.52642 * 58.65743 * 17 2 1 20 20 N 1.46497 * 109.47793 * 184.85655 * 19 17 2 21 21 C 1.36931 * 120.00411 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00430 * 359.97438 * 21 20 19 23 23 C 1.38821 * 120.00175 * 179.97438 * 21 20 19 24 24 N 1.31616 * 119.99691 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00156 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47312 * 59.99683 * 25 23 21 27 27 H 1.48495 * 109.46962 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46688 * 299.99832 * 25 23 21 29 29 H 1.09007 * 109.46885 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47530 * 299.97202 * 1 2 3 31 31 H 1.08995 * 109.47120 * 59.97976 * 1 2 3 32 32 H 1.09002 * 109.49496 * 301.33107 * 4 2 1 33 33 H 1.08995 * 109.50124 * 61.39594 * 4 2 1 34 34 H 1.08993 * 109.50819 * 185.70269 * 5 4 2 35 35 H 1.09000 * 109.43232 * 65.42322 * 5 4 2 36 36 H 1.07997 * 119.52426 * 180.02562 * 11 10 9 37 37 H 1.08001 * 120.31490 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.76761 * 179.97438 * 13 12 11 39 39 H 1.08994 * 109.58701 * 66.42911 * 16 6 5 40 40 H 1.08999 * 109.58729 * 186.86074 * 16 6 5 41 41 H 1.09006 * 109.47339 * 304.85617 * 19 17 2 42 42 H 1.08998 * 109.47306 * 64.85137 * 19 17 2 43 43 H 0.97006 * 119.99640 * 0.02562 * 20 19 17 44 44 H 0.97005 * 120.00194 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7207 1.2503 5 6 3.5669 -0.6925 1.2647 6 7 4.0677 -1.2491 0.0005 7 6 4.9611 -2.2583 0.0008 8 8 5.4162 -2.6671 -1.0492 9 6 5.3879 -2.8689 1.2805 10 7 5.6172 -2.0955 2.3352 11 6 5.9979 -2.5974 3.4891 12 6 6.1764 -3.9630 3.6484 13 6 5.9490 -4.8078 2.5745 14 6 5.5478 -4.2511 1.3679 15 17 5.2551 -5.2606 -0.0137 16 6 3.5715 -0.6890 -1.2639 17 6 2.0399 -0.7209 -1.2498 18 1 1.6977 -1.7558 -1.2380 19 6 1.5031 -0.0199 -2.4993 20 7 1.8954 -0.7768 -3.6907 21 6 1.5256 -0.3373 -4.9337 22 1 0.9444 0.5672 -5.0359 23 6 1.8978 -1.0543 -6.0626 24 7 2.6065 -2.1564 -5.9381 25 14 1.3939 -0.4544 -7.7584 26 1 1.9567 0.8998 -7.9918 27 1 1.9113 -1.3904 -8.7885 28 1 -0.0876 -0.3960 -7.8427 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5134 0.8902 31 1 -0.3633 0.5141 -0.8898 32 1 1.6569 -0.2205 2.1399 33 1 1.6969 -1.7553 1.2389 34 1 3.9341 -1.2908 2.0984 35 1 3.9096 0.3367 1.3719 36 1 6.1744 -1.9364 4.3247 37 1 6.4899 -4.3644 4.6008 38 1 6.0816 -5.8750 2.6734 39 1 3.9145 0.3404 -1.3670 40 1 3.9418 -1.2851 -2.0979 41 1 0.4158 0.0358 -2.4460 42 1 1.9160 0.9873 -2.5566 43 1 2.4171 -1.5895 -3.5989 44 1 2.8663 -2.6577 -6.7269 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133255232.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:30 Heat of formation + Delta-G solvation = -7.625497 kcal Electronic energy + Delta-G solvation = -27337.884689 eV Core-core repulsion = 23508.664880 eV Total energy + Delta-G solvation = -3829.219809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.02590 -40.60267 -39.10463 -37.71702 -36.63439 -35.15542 -33.70551 -33.50541 -32.39744 -31.41043 -29.32351 -27.51197 -25.89689 -24.99981 -24.51524 -23.99092 -22.59951 -21.57954 -20.56153 -19.18184 -18.62174 -18.15808 -17.44150 -17.25366 -16.74997 -16.30386 -16.17505 -15.68434 -15.54318 -15.28422 -15.17093 -14.95838 -14.53814 -14.40077 -14.21118 -14.12479 -13.98641 -13.47067 -13.26291 -13.05002 -12.94336 -12.75641 -12.65909 -12.59475 -12.33015 -12.22135 -12.01271 -11.90501 -11.77363 -11.40823 -11.34045 -11.19653 -10.92898 -10.88727 -10.39330 -10.12969 -9.67323 -8.99757 -7.93797 -5.24330 -0.50755 -0.03237 0.94669 1.44209 1.48874 1.50749 1.55065 1.79405 2.51853 2.55456 2.98797 3.38646 3.53182 3.62229 3.67389 3.80713 3.84170 3.87457 4.04486 4.09787 4.22973 4.28072 4.33580 4.46876 4.57440 4.59646 4.73631 4.79116 4.80537 4.89012 4.93693 4.94631 4.97371 5.07117 5.11435 5.22047 5.25344 5.39510 5.44367 5.47994 5.53884 5.56772 6.25981 6.28216 6.54797 6.98963 7.31527 8.08344 8.30771 9.29436 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.013530 B = 0.003418 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.017728 B = 8189.907732 C = 9687.354227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 H 0.085 0.915 4 C -0.122 4.122 5 C 0.099 3.901 6 N -0.589 5.589 7 C 0.552 3.448 8 O -0.560 6.560 9 C 0.074 3.926 10 N -0.454 5.454 11 C 0.100 3.900 12 C -0.114 4.114 13 C -0.072 4.072 14 C -0.065 4.065 15 Cl -0.055 7.055 16 C 0.128 3.872 17 C -0.087 4.087 18 H 0.048 0.952 19 C 0.158 3.842 20 N -0.748 5.748 21 C -0.246 4.246 22 H 0.080 0.920 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.977 3.023 26 H -0.276 1.276 27 H -0.298 1.298 28 H -0.274 1.274 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.112 0.888 33 H 0.052 0.948 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.214 0.786 37 H 0.200 0.800 38 H 0.177 0.823 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.036 0.964 42 H 0.024 0.976 43 H 0.369 0.631 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.522 -0.877 31.048 31.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.097 4.097 3 H 0.104 0.896 4 C -0.160 4.160 5 C -0.022 4.022 6 N -0.320 5.320 7 C 0.339 3.661 8 O -0.438 6.438 9 C -0.063 4.063 10 N -0.166 5.166 11 C -0.059 4.059 12 C -0.134 4.134 13 C -0.098 4.098 14 C -0.096 4.096 15 Cl -0.026 7.026 16 C 0.005 3.995 17 C -0.107 4.107 18 H 0.067 0.933 19 C 0.032 3.968 20 N -0.391 5.391 21 C -0.378 4.378 22 H 0.098 0.902 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.806 3.194 26 H -0.202 1.202 27 H -0.224 1.224 28 H -0.200 1.200 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.130 0.870 33 H 0.071 0.929 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.230 0.770 37 H 0.217 0.783 38 H 0.194 0.806 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.042 0.958 43 H 0.201 0.799 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.518 -0.137 30.120 30.457 hybrid contribution 0.177 -1.371 -1.936 2.379 sum 4.695 -1.508 28.184 28.613 Atomic orbital electron populations 1.21847 0.94055 1.01659 1.02536 1.21093 0.96611 0.99630 0.92394 0.89636 1.21941 0.94469 1.00886 0.98717 1.22288 0.94318 1.00753 0.84882 1.48091 1.41559 1.33633 1.08754 1.18452 0.79893 0.79798 0.88004 1.90868 1.56647 1.62822 1.33432 1.20662 1.02122 0.89802 0.93700 1.67865 1.10970 1.38277 0.99533 1.23861 0.92363 0.95299 0.94410 1.22930 0.96150 0.93646 1.00641 1.22004 0.94975 1.03497 0.89310 1.22259 1.03823 0.91511 0.91973 1.98446 1.94084 1.67606 1.42477 1.21467 0.94291 0.98424 0.85308 1.21556 0.93559 0.99543 0.96002 0.93305 1.20907 0.97217 0.93858 0.84833 1.42675 1.65143 1.29231 1.02021 1.19638 1.26876 1.06303 0.84964 0.90240 1.25669 1.01568 0.97973 1.01967 1.69873 1.44211 1.18991 1.29182 0.85157 0.78000 0.77140 0.79132 1.20177 1.22390 1.20027 0.93669 0.90083 0.93008 0.87016 0.92945 0.86764 0.89695 0.76954 0.78328 0.80607 0.90874 0.92835 0.94673 0.95770 0.79905 0.94192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.81 71.98 0.63 -2.58 16 2 C -0.08 -1.90 2.23 -10.77 -0.02 -1.93 16 3 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 4 C -0.12 -2.41 5.34 30.53 0.16 -2.25 16 5 C 0.10 2.18 5.99 86.22 0.52 2.70 16 6 N -0.59 -19.11 2.98 -822.89 -2.45 -21.56 16 7 C 0.55 20.11 7.12 86.86 0.62 20.73 16 8 O -0.56 -25.84 14.75 -3.78 -0.06 -25.90 16 9 C 0.07 2.02 5.98 41.90 0.25 2.27 16 10 N -0.45 -8.96 7.34 -184.85 -1.36 -10.32 16 11 C 0.10 0.95 11.18 84.84 0.95 1.90 16 12 C -0.11 -0.74 10.11 22.43 0.23 -0.51 16 13 C -0.07 -0.96 9.98 22.47 0.22 -0.74 16 14 C -0.07 -1.60 6.35 22.69 0.14 -1.45 16 15 Cl -0.06 -1.70 26.87 -2.72 -0.07 -1.77 16 16 C 0.13 4.85 5.51 86.36 0.48 5.32 16 17 C -0.09 -3.05 1.92 -10.72 -0.02 -3.07 16 18 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 19 C 0.16 6.65 5.41 86.38 0.47 7.11 16 20 N -0.75 -41.17 5.38 -343.46 -1.85 -43.01 16 21 C -0.25 -14.57 9.99 84.04 0.84 -13.73 16 22 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 23 C -0.08 -4.88 5.50 84.86 0.47 -4.42 16 24 N -0.97 -64.33 13.06 21.65 0.28 -64.05 16 25 Si 0.98 48.68 29.55 68.60 2.03 50.70 16 26 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 27 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 28 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 29 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.05 1.29 6.30 -2.39 -0.02 1.28 16 32 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.11 2.27 4.61 -2.39 -0.01 2.26 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 36 H 0.21 0.12 8.06 -2.91 -0.02 0.09 16 37 H 0.20 -0.61 8.06 -2.91 -0.02 -0.64 16 38 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 39 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.05 2.60 6.23 -2.39 -0.01 2.58 16 41 H 0.04 1.44 6.15 -2.38 -0.01 1.43 16 42 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.37 22.39 6.89 -92.70 -0.64 21.75 16 44 H 0.25 16.04 8.31 -92.70 -0.77 15.27 16 Total: -1.00 -84.58 366.44 2.85 -81.73 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.39 Total: 24.80 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 5.93 Total: 9.37 kcal Atomic # 7 Polarization: -133.57 SS G_CDS: -5.37 Total: -138.94 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.06 Total: -25.90 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.70 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.07 Total: -1.77 kcal Total: -84.58 2.85 -81.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133255232.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.103 kcal (2) G-P(sol) polarization free energy of solvation -84.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds