Wall clock time and date at job start Tue Mar 31 2020 20:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.44240 * 2 1 4 4 C 1.53035 * 109.45983 * 240.03692 * 2 1 3 5 5 C 1.53195 * 109.31572 * 178.61207 * 4 2 1 6 6 N 1.46924 * 108.77255 * 54.63174 * 5 4 2 7 7 C 1.34781 * 120.63019 * 126.37097 * 6 5 4 8 8 O 1.21526 * 119.99922 * 352.18790 * 7 6 5 9 9 C 1.48086 * 120.00043 * 172.18136 * 7 6 5 10 10 N 1.32777 * 119.73288 * 352.12962 * 9 7 6 11 11 C 1.31471 * 121.64858 * 179.70845 * 10 9 7 12 12 C 1.38645 * 120.93947 * 0.56474 * 11 10 9 13 13 C 1.38507 * 119.37723 * 359.72038 * 12 11 10 14 14 C 1.38809 * 118.47754 * 0.02562 * 13 12 11 15 15 Cl 1.73605 * 120.48939 * 180.02562 * 14 13 12 16 16 C 1.46929 * 118.74042 * 306.39510 * 6 5 4 17 17 C 1.53034 * 109.46260 * 119.96447 * 2 1 3 18 18 H 1.09002 * 109.52362 * 61.42196 * 17 2 1 19 19 C 1.52999 * 109.49983 * 301.34108 * 17 2 1 20 20 N 1.46503 * 109.47298 * 175.16175 * 19 17 2 21 21 C 1.36939 * 120.00003 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99796 * 359.97438 * 21 20 19 23 23 C 1.38814 * 119.99839 * 180.02562 * 21 20 19 24 24 N 1.31615 * 119.99836 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99877 * 179.72390 * 23 21 20 26 26 H 1.48499 * 109.47230 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47176 * 119.99836 * 25 23 21 28 28 H 1.48501 * 109.47112 * 239.99934 * 25 23 21 29 29 H 1.09005 * 109.46879 * 300.03180 * 1 2 3 30 30 H 1.09000 * 109.47793 * 60.03141 * 1 2 3 31 31 H 1.09001 * 109.47445 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.49830 * 58.65828 * 4 2 1 33 33 H 1.08998 * 109.52183 * 298.58112 * 4 2 1 34 34 H 1.08998 * 109.58681 * 294.84904 * 5 4 2 35 35 H 1.08993 * 109.70206 * 174.49282 * 5 4 2 36 36 H 1.07998 * 119.52842 * 180.26222 * 11 10 9 37 37 H 1.07997 * 120.31036 * 179.74866 * 12 11 10 38 38 H 1.07999 * 120.76627 * 179.97438 * 13 12 11 39 39 H 1.09003 * 109.58349 * 293.81923 * 16 6 5 40 40 H 1.09004 * 109.58623 * 173.39671 * 16 6 5 41 41 H 1.08997 * 109.47637 * 55.15895 * 19 17 2 42 42 H 1.09006 * 109.46998 * 295.16010 * 19 17 2 43 43 H 0.97001 * 119.99905 * 359.97438 * 20 19 17 44 44 H 0.97004 * 119.99461 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5714 -0.6885 -1.2644 6 7 4.0679 -1.2487 -0.0001 7 6 4.9614 -2.2577 -0.0001 8 8 5.2570 -2.8076 -1.0428 9 6 5.5832 -2.6962 1.2704 10 7 5.3792 -1.9954 2.3796 11 6 5.9080 -2.3535 3.5288 12 6 6.7134 -3.4780 3.6233 13 6 6.9578 -4.2359 2.4900 14 6 6.3828 -3.8380 1.2910 15 17 6.6538 -4.7498 -0.1613 16 6 3.5713 -0.6885 1.2642 17 6 2.0399 -0.7207 1.2500 18 1 1.6979 -1.7556 1.2388 19 6 1.5028 -0.0189 2.4990 20 7 1.8951 -0.7750 3.6909 21 6 1.5250 -0.3347 4.9336 22 1 0.9442 0.5702 5.0351 23 6 1.8972 -1.0509 6.0630 24 7 2.6053 -2.1534 5.9392 25 14 1.3989 -0.4462 7.7586 26 1 0.6184 0.8102 7.6265 27 1 0.5669 -1.4784 8.4276 28 1 2.6159 -0.1893 8.5699 29 1 -0.3633 0.5144 0.8898 30 1 -0.3635 0.5133 -0.8902 31 1 -0.3634 -1.0276 0.0005 32 1 1.6571 -0.2206 -2.1398 33 1 1.6978 -1.7555 -1.2389 34 1 3.9142 0.3410 -1.3674 35 1 3.9436 -1.2828 -2.0987 36 1 5.7160 -1.7605 4.4108 37 1 7.1459 -3.7605 4.5717 38 1 7.5822 -5.1158 2.5380 39 1 3.9143 0.3411 1.3673 40 1 3.9417 -1.2844 2.0984 41 1 0.4155 0.0366 2.4454 42 1 1.9155 0.9884 2.5556 43 1 2.4170 -1.5876 3.5997 44 1 2.8650 -2.6541 6.7285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133255233.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:42 Heat of formation + Delta-G solvation = 27.673432 kcal Electronic energy + Delta-G solvation = -27999.231330 eV Core-core repulsion = 24171.542197 eV Total energy + Delta-G solvation = -3827.689132 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.83471 -39.30905 -37.80546 -36.48192 -34.73525 -33.87732 -32.63980 -31.77984 -31.11043 -29.71884 -28.10235 -25.46931 -24.95620 -23.63876 -23.08702 -22.71213 -21.16933 -20.13742 -19.36992 -17.45278 -17.05217 -16.95741 -16.27308 -15.64715 -15.34249 -14.96792 -14.82148 -14.41940 -14.13565 -13.91277 -13.74884 -13.62367 -13.31600 -12.98750 -12.84870 -12.68325 -12.37709 -12.18163 -11.96791 -11.75318 -11.57987 -11.40663 -11.28908 -10.97491 -10.88710 -10.77577 -10.56694 -10.32255 -10.15808 -9.90919 -9.85221 -9.73460 -9.58280 -8.96029 -8.88193 -8.61651 -8.31613 -6.88402 -5.76685 -3.03414 0.59036 1.04843 2.09334 2.84601 3.08218 3.41556 3.48835 3.49691 3.81842 4.16815 4.57912 4.59300 4.73407 4.88893 4.91824 5.00398 5.04183 5.22395 5.34398 5.35384 5.46928 5.58434 5.68631 5.73969 5.75718 5.80834 5.84514 5.97654 5.99571 6.06138 6.09318 6.14197 6.29909 6.36280 6.39696 6.48931 6.54895 6.66707 6.83942 6.98056 7.13963 7.55445 7.71355 7.74316 8.29774 8.42496 9.54341 10.13066 10.48824 11.46030 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.009350 B = 0.005042 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.073330 B = 5551.959843 C = 8199.794800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.070 0.930 4 C -0.126 4.126 5 C 0.110 3.890 6 N -0.588 5.588 7 C 0.567 3.433 8 O -0.526 6.526 9 C 0.085 3.915 10 N -0.423 5.423 11 C 0.122 3.878 12 C -0.135 4.135 13 C -0.078 4.078 14 C -0.045 4.045 15 Cl -0.028 7.028 16 C 0.076 3.924 17 C -0.104 4.104 18 H 0.069 0.931 19 C 0.159 3.841 20 N -0.730 5.730 21 C -0.231 4.231 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.903 3.097 26 H -0.282 1.282 27 H -0.294 1.294 28 H -0.293 1.293 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.179 0.821 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.062 0.938 40 H 0.162 0.838 41 H 0.026 0.974 42 H 0.019 0.981 43 H 0.383 0.617 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.299 -0.856 -11.097 13.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.088 0.912 4 C -0.164 4.164 5 C -0.012 4.012 6 N -0.320 5.320 7 C 0.353 3.647 8 O -0.402 6.402 9 C -0.053 4.053 10 N -0.134 5.134 11 C -0.036 4.036 12 C -0.155 4.155 13 C -0.104 4.104 14 C -0.076 4.076 15 Cl 0.001 6.999 16 C -0.046 4.046 17 C -0.123 4.123 18 H 0.087 0.913 19 C 0.031 3.969 20 N -0.374 5.374 21 C -0.363 4.363 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.582 5.582 25 Si 0.734 3.266 26 H -0.207 1.207 27 H -0.221 1.221 28 H -0.220 1.220 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.196 0.804 37 H 0.167 0.833 38 H 0.166 0.834 39 H 0.080 0.920 40 H 0.177 0.823 41 H 0.043 0.957 42 H 0.037 0.963 43 H 0.217 0.783 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.886 -0.368 -11.752 13.626 hybrid contribution 0.243 -0.724 1.114 1.350 sum 7.129 -1.092 -10.638 12.852 Atomic orbital electron populations 1.21883 0.95177 1.01842 1.01557 1.21120 0.95774 0.99360 0.94271 0.91199 1.21954 0.94782 1.01461 0.98226 1.21627 0.94202 0.98649 0.86762 1.48035 1.41420 1.34087 1.08441 1.17793 0.79781 0.80036 0.87088 1.90820 1.62903 1.54558 1.31966 1.21118 0.97404 0.92771 0.93981 1.67853 1.17851 1.29200 0.98536 1.23333 0.90052 0.94282 0.95934 1.22415 0.98543 0.95430 0.99155 1.21553 0.98284 1.00064 0.90493 1.21884 1.00263 0.95074 0.90335 1.98402 1.94689 1.72085 1.34685 1.23246 0.93175 1.01144 0.86996 1.21757 0.95391 1.00266 0.94926 0.91304 1.20714 0.96663 0.94092 0.85391 1.42382 1.65142 1.29173 1.00743 1.19283 1.27054 1.06109 0.83805 0.91296 1.24651 1.01170 0.97597 0.97472 1.69669 1.43051 1.17462 1.28029 0.86178 0.77612 0.77750 0.85028 1.20715 1.22094 1.21997 0.91725 0.93333 0.92880 0.91054 0.91603 0.91617 0.89262 0.80398 0.83342 0.83438 0.92016 0.82272 0.95676 0.96317 0.78264 0.93835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.81 37.16 0.33 -1.53 16 2 C -0.09 -1.16 2.23 -90.59 -0.20 -1.36 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.13 -1.54 5.36 -26.61 -0.14 -1.68 16 5 C 0.11 1.45 6.44 -3.71 -0.02 1.43 16 6 N -0.59 -9.31 2.97 -173.79 -0.52 -9.82 16 7 C 0.57 9.71 7.64 -12.22 -0.09 9.62 16 8 O -0.53 -9.55 13.43 5.34 0.07 -9.48 16 9 C 0.09 1.40 6.60 -82.98 -0.55 0.85 16 10 N -0.42 -6.98 6.08 -9.78 -0.06 -7.04 16 11 C 0.12 1.80 11.18 -17.56 -0.20 1.61 16 12 C -0.14 -1.60 10.11 -39.33 -0.40 -1.99 16 13 C -0.08 -0.92 9.98 -39.27 -0.39 -1.31 16 14 C -0.05 -0.66 6.37 -38.93 -0.25 -0.91 16 15 Cl -0.03 -0.40 26.07 -51.86 -1.35 -1.75 16 16 C 0.08 1.27 4.99 -3.71 -0.02 1.25 16 17 C -0.10 -1.73 1.92 -90.51 -0.17 -1.90 16 18 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 19 C 0.16 3.12 5.41 -4.04 -0.02 3.10 16 20 N -0.73 -17.64 5.38 -59.91 -0.32 -17.96 16 21 C -0.23 -6.18 9.99 -15.06 -0.15 -6.33 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -26.04 13.06 55.49 0.72 -25.32 16 25 Si 0.90 21.55 29.55 -169.99 -5.02 16.52 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H 0.06 0.87 6.30 -51.93 -0.33 0.54 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.21 7.00 -51.93 -0.36 0.84 16 36 H 0.18 2.64 8.06 -52.49 -0.42 2.22 16 37 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.16 2.97 3.16 -87.32 -0.28 2.70 16 41 H 0.03 0.50 6.15 -51.93 -0.32 0.18 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.38 9.73 6.89 -40.82 -0.28 9.45 16 44 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 363.48 15.07 5.48 5.48 Total: -1.00 -29.99 363.48 -9.56 -39.55 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.19 Total: 9.43 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -2.38 Total: 0.38 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -0.17 Total: -60.14 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.07 Total: -9.48 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.35 Total: -1.75 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.99 -9.56 -39.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133255233.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.224 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds