Wall clock time and date at job start Tue Mar 31 2020 20:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.44240 * 2 1 4 4 C 1.53035 * 109.45983 * 240.03692 * 2 1 3 5 5 C 1.53195 * 109.31572 * 178.61207 * 4 2 1 6 6 N 1.46924 * 108.77255 * 54.63174 * 5 4 2 7 7 C 1.34781 * 120.63019 * 126.37097 * 6 5 4 8 8 O 1.21526 * 119.99922 * 352.18790 * 7 6 5 9 9 C 1.48086 * 120.00043 * 172.18136 * 7 6 5 10 10 N 1.32777 * 119.73288 * 352.12962 * 9 7 6 11 11 C 1.31471 * 121.64858 * 179.70845 * 10 9 7 12 12 C 1.38645 * 120.93947 * 0.56474 * 11 10 9 13 13 C 1.38507 * 119.37723 * 359.72038 * 12 11 10 14 14 C 1.38809 * 118.47754 * 0.02562 * 13 12 11 15 15 Cl 1.73605 * 120.48939 * 180.02562 * 14 13 12 16 16 C 1.46929 * 118.74042 * 306.39510 * 6 5 4 17 17 C 1.53034 * 109.46260 * 119.96447 * 2 1 3 18 18 H 1.09002 * 109.52362 * 61.42196 * 17 2 1 19 19 C 1.52999 * 109.49983 * 301.34108 * 17 2 1 20 20 N 1.46503 * 109.47298 * 175.16175 * 19 17 2 21 21 C 1.36939 * 120.00003 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99796 * 359.97438 * 21 20 19 23 23 C 1.38814 * 119.99839 * 180.02562 * 21 20 19 24 24 N 1.31615 * 119.99836 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99877 * 179.72390 * 23 21 20 26 26 H 1.48499 * 109.47230 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47176 * 119.99836 * 25 23 21 28 28 H 1.48501 * 109.47112 * 239.99934 * 25 23 21 29 29 H 1.09005 * 109.46879 * 300.03180 * 1 2 3 30 30 H 1.09000 * 109.47793 * 60.03141 * 1 2 3 31 31 H 1.09001 * 109.47445 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.49830 * 58.65828 * 4 2 1 33 33 H 1.08998 * 109.52183 * 298.58112 * 4 2 1 34 34 H 1.08998 * 109.58681 * 294.84904 * 5 4 2 35 35 H 1.08993 * 109.70206 * 174.49282 * 5 4 2 36 36 H 1.07998 * 119.52842 * 180.26222 * 11 10 9 37 37 H 1.07997 * 120.31036 * 179.74866 * 12 11 10 38 38 H 1.07999 * 120.76627 * 179.97438 * 13 12 11 39 39 H 1.09003 * 109.58349 * 293.81923 * 16 6 5 40 40 H 1.09004 * 109.58623 * 173.39671 * 16 6 5 41 41 H 1.08997 * 109.47637 * 55.15895 * 19 17 2 42 42 H 1.09006 * 109.46998 * 295.16010 * 19 17 2 43 43 H 0.97001 * 119.99905 * 359.97438 * 20 19 17 44 44 H 0.97004 * 119.99461 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0279 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5714 -0.6885 -1.2644 6 7 4.0679 -1.2487 -0.0001 7 6 4.9614 -2.2577 -0.0001 8 8 5.2570 -2.8076 -1.0428 9 6 5.5832 -2.6962 1.2704 10 7 5.3792 -1.9954 2.3796 11 6 5.9080 -2.3535 3.5288 12 6 6.7134 -3.4780 3.6233 13 6 6.9578 -4.2359 2.4900 14 6 6.3828 -3.8380 1.2910 15 17 6.6538 -4.7498 -0.1613 16 6 3.5713 -0.6885 1.2642 17 6 2.0399 -0.7207 1.2500 18 1 1.6979 -1.7556 1.2388 19 6 1.5028 -0.0189 2.4990 20 7 1.8951 -0.7750 3.6909 21 6 1.5250 -0.3347 4.9336 22 1 0.9442 0.5702 5.0351 23 6 1.8972 -1.0509 6.0630 24 7 2.6053 -2.1534 5.9392 25 14 1.3989 -0.4462 7.7586 26 1 0.6184 0.8102 7.6265 27 1 0.5669 -1.4784 8.4276 28 1 2.6159 -0.1893 8.5699 29 1 -0.3633 0.5144 0.8898 30 1 -0.3635 0.5133 -0.8902 31 1 -0.3634 -1.0276 0.0005 32 1 1.6571 -0.2206 -2.1398 33 1 1.6978 -1.7555 -1.2389 34 1 3.9142 0.3410 -1.3674 35 1 3.9436 -1.2828 -2.0987 36 1 5.7160 -1.7605 4.4108 37 1 7.1459 -3.7605 4.5717 38 1 7.5822 -5.1158 2.5380 39 1 3.9143 0.3411 1.3673 40 1 3.9417 -1.2844 2.0984 41 1 0.4155 0.0366 2.4454 42 1 1.9155 0.9884 2.5556 43 1 2.4170 -1.5876 3.5997 44 1 2.8650 -2.6541 6.7285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133255233.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:41 Heat of formation + Delta-G solvation = 11.022696 kcal Electronic energy + Delta-G solvation = -27999.953360 eV Core-core repulsion = 24171.542197 eV Total energy + Delta-G solvation = -3828.411162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.01266 -40.48093 -39.10562 -37.60103 -36.41232 -35.15110 -33.91912 -33.25044 -32.29312 -31.28441 -29.30323 -27.12384 -26.06628 -25.01015 -24.55510 -23.84483 -22.52733 -21.46817 -20.55741 -19.05099 -18.52960 -18.18318 -17.36455 -16.86121 -16.66850 -16.54544 -16.11962 -15.61585 -15.56080 -15.31930 -15.10999 -14.92679 -14.55234 -14.32832 -14.25159 -13.91305 -13.75909 -13.33706 -13.14434 -12.97560 -12.91214 -12.78629 -12.64666 -12.57181 -12.41994 -12.09360 -11.94117 -11.87698 -11.74969 -11.40847 -11.14867 -11.00158 -10.85364 -10.84251 -10.10957 -9.81653 -9.55612 -8.85871 -7.83572 -5.10852 -0.53173 -0.00274 0.98421 1.51970 1.53854 1.61952 1.62887 1.90252 2.62842 2.67054 2.98026 3.47901 3.51622 3.69216 3.74291 3.87516 3.89713 3.91975 4.07982 4.20948 4.27625 4.35745 4.36748 4.51566 4.60077 4.67010 4.76233 4.82788 4.84116 4.92305 4.96525 4.96739 5.08279 5.15389 5.17853 5.25957 5.29994 5.46239 5.46792 5.58091 5.61819 5.85117 6.29116 6.37791 6.58757 7.04184 7.45089 8.18883 8.45372 9.38999 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.009350 B = 0.005042 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.073330 B = 5551.959843 C = 8199.794800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 H 0.081 0.919 4 C -0.117 4.117 5 C 0.105 3.895 6 N -0.588 5.588 7 C 0.559 3.441 8 O -0.544 6.544 9 C 0.057 3.943 10 N -0.443 5.443 11 C 0.101 3.899 12 C -0.117 4.117 13 C -0.068 4.068 14 C -0.053 4.053 15 Cl -0.029 7.029 16 C 0.080 3.920 17 C -0.092 4.092 18 H 0.045 0.955 19 C 0.161 3.839 20 N -0.739 5.739 21 C -0.242 4.242 22 H 0.069 0.931 23 C -0.063 4.063 24 N -0.955 5.955 25 Si 0.963 3.037 26 H -0.274 1.274 27 H -0.299 1.299 28 H -0.291 1.291 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.104 0.896 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.170 0.830 37 H 0.186 0.814 38 H 0.185 0.815 39 H 0.060 0.940 40 H 0.147 0.853 41 H 0.027 0.973 42 H 0.021 0.979 43 H 0.375 0.625 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.495 -0.512 -11.333 13.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 H 0.100 0.900 4 C -0.155 4.155 5 C -0.016 4.016 6 N -0.319 5.319 7 C 0.346 3.654 8 O -0.422 6.422 9 C -0.080 4.080 10 N -0.155 5.155 11 C -0.058 4.058 12 C -0.136 4.136 13 C -0.094 4.094 14 C -0.083 4.083 15 Cl 0.000 7.000 16 C -0.042 4.042 17 C -0.112 4.112 18 H 0.064 0.936 19 C 0.034 3.966 20 N -0.382 5.382 21 C -0.374 4.374 22 H 0.087 0.913 23 C -0.256 4.256 24 N -0.606 5.606 25 Si 0.793 3.207 26 H -0.199 1.199 27 H -0.227 1.227 28 H -0.218 1.218 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.122 0.878 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.187 0.813 37 H 0.203 0.797 38 H 0.202 0.798 39 H 0.078 0.922 40 H 0.163 0.837 41 H 0.045 0.955 42 H 0.039 0.961 43 H 0.207 0.793 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.061 0.011 -12.015 13.936 hybrid contribution 0.193 -0.829 1.197 1.468 sum 7.254 -0.817 -10.818 13.051 Atomic orbital electron populations 1.21846 0.94333 1.01570 1.02349 1.21103 0.96414 0.99531 0.92971 0.90045 1.21903 0.93879 1.00887 0.98799 1.21841 0.94931 0.99405 0.85469 1.48090 1.41100 1.33757 1.08937 1.18046 0.79928 0.80137 0.87337 1.90790 1.63691 1.55198 1.32519 1.21127 0.98997 0.94113 0.93776 1.67729 1.18575 1.30087 0.99089 1.23409 0.91345 0.95761 0.95264 1.22742 0.96643 0.93577 1.00661 1.21971 0.97603 1.00748 0.89107 1.22108 1.00231 0.94703 0.91272 1.98396 1.94626 1.71876 1.35078 1.23059 0.93091 1.00699 0.87335 1.21604 0.95326 0.98948 0.95305 0.93627 1.20813 0.96699 0.93898 0.85154 1.42524 1.65022 1.29223 1.01443 1.19577 1.26719 1.06054 0.85040 0.91267 1.25327 1.01721 0.98045 1.00481 1.69796 1.43935 1.18293 1.28564 0.85236 0.77087 0.77252 0.81094 1.19894 1.22651 1.21836 0.92806 0.90641 0.93692 0.87787 0.92952 0.89788 0.89504 0.81335 0.79720 0.79777 0.92194 0.83734 0.95518 0.96095 0.79289 0.94111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.81 71.98 0.63 -2.75 16 2 C -0.08 -2.06 2.23 -10.77 -0.02 -2.08 16 3 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 4 C -0.12 -2.64 5.36 30.67 0.16 -2.47 16 5 C 0.10 2.66 6.44 86.36 0.56 3.21 16 6 N -0.59 -18.72 2.97 -822.03 -2.44 -21.17 16 7 C 0.56 19.50 7.64 86.86 0.66 20.16 16 8 O -0.54 -19.97 13.43 -3.80 -0.05 -20.02 16 9 C 0.06 1.92 6.60 41.90 0.28 2.19 16 10 N -0.44 -15.07 6.08 -184.84 -1.12 -16.19 16 11 C 0.10 3.01 11.18 84.84 0.95 3.96 16 12 C -0.12 -2.56 10.11 22.43 0.23 -2.33 16 13 C -0.07 -1.49 9.98 22.47 0.22 -1.26 16 14 C -0.05 -1.51 6.37 22.69 0.14 -1.37 16 15 Cl -0.03 -0.82 26.07 -2.72 -0.07 -0.89 16 16 C 0.08 2.74 4.99 86.36 0.43 3.17 16 17 C -0.09 -3.09 1.92 -10.72 -0.02 -3.11 16 18 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 19 C 0.16 6.37 5.41 86.38 0.47 6.84 16 20 N -0.74 -36.39 5.38 -343.44 -1.85 -38.24 16 21 C -0.24 -13.03 9.99 84.03 0.84 -12.19 16 22 H 0.07 3.65 7.83 -2.91 -0.02 3.62 16 23 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 24 N -0.96 -53.90 13.06 21.65 0.28 -53.62 16 25 Si 0.96 44.32 29.55 68.60 2.03 46.35 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 27 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 28 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 29 H 0.05 1.38 6.30 -2.38 -0.02 1.36 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 2.27 7.00 -2.39 -0.02 2.26 16 36 H 0.17 5.23 8.06 -2.91 -0.02 5.20 16 37 H 0.19 2.65 8.06 -2.91 -0.02 2.63 16 38 H 0.18 2.59 8.06 -2.91 -0.02 2.57 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.15 5.61 3.16 -72.28 -0.23 5.38 16 41 H 0.03 1.06 6.15 -2.39 -0.01 1.05 16 42 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.37 19.62 6.89 -92.71 -0.64 18.99 16 44 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 Total: -1.00 -65.21 363.48 2.94 -62.27 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.17 Total: 32.48 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 6.00 Total: 9.03 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -5.13 Total: -129.22 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.05 Total: -20.02 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.07 Total: -0.89 kcal Total: -65.21 2.94 -62.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133255233.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.291 kcal (2) G-P(sol) polarization free energy of solvation -65.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds