Wall clock time and date at job start Tue Mar 31 2020 20:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.45964 * 2 1 4 4 C 1.53035 * 109.45086 * 119.96637 * 2 1 3 5 5 C 1.53200 * 109.31388 * 58.64693 * 4 2 1 6 6 N 1.46918 * 108.77278 * 54.63638 * 5 4 2 7 7 C 1.34775 * 120.62865 * 126.41258 * 6 5 4 8 8 O 1.21526 * 119.99999 * 179.77857 * 7 6 5 9 9 C 1.48108 * 120.00400 * 359.78547 * 7 6 5 10 10 C 1.39344 * 119.71169 * 201.82981 * 9 7 6 11 11 C 1.38520 * 119.07859 * 179.74771 * 10 9 7 12 12 C 1.38775 * 118.47571 * 0.51738 * 11 10 9 13 13 Cl 1.73598 * 120.33581 * 179.72366 * 12 11 10 14 14 C 1.38717 * 119.32727 * 359.74802 * 12 11 10 15 15 N 1.31492 * 120.87686 * 359.97438 * 14 12 11 16 16 C 1.46928 * 118.74116 * 306.38944 * 6 5 4 17 17 C 1.53044 * 109.45926 * 240.02657 * 2 1 3 18 18 H 1.09001 * 109.49811 * 181.40826 * 17 2 1 19 19 C 1.53001 * 109.49763 * 61.34043 * 17 2 1 20 20 N 1.46493 * 109.47228 * 175.06440 * 19 17 2 21 21 C 1.36935 * 120.00270 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99882 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00274 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99731 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00184 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47297 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47279 * 120.00003 * 25 23 21 28 28 H 1.48497 * 109.47518 * 240.00369 * 25 23 21 29 29 H 1.09005 * 109.47131 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46974 * 299.97233 * 1 2 3 31 31 H 1.08997 * 109.47196 * 59.97755 * 1 2 3 32 32 H 1.09000 * 109.49973 * 178.59824 * 4 2 1 33 33 H 1.09001 * 109.49943 * 298.69818 * 4 2 1 34 34 H 1.09001 * 109.58503 * 174.42380 * 5 4 2 35 35 H 1.08995 * 109.58377 * 294.70449 * 5 4 2 36 36 H 1.08002 * 120.46008 * 0.02562 * 10 9 7 37 37 H 1.08002 * 120.76149 * 180.28588 * 11 10 9 38 38 H 1.07997 * 119.56577 * 180.02562 * 14 12 11 39 39 H 1.08995 * 109.58715 * 293.82698 * 16 6 5 40 40 H 1.08997 * 109.58473 * 173.39704 * 16 6 5 41 41 H 1.09005 * 109.47338 * 295.06631 * 19 17 2 42 42 H 1.09003 * 109.47256 * 55.06532 * 19 17 2 43 43 H 0.97004 * 119.99808 * 0.02562 * 20 19 17 44 44 H 0.96998 * 119.99576 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7208 1.2501 5 6 1.4990 -2.1542 1.2643 6 7 1.8620 -2.8089 0.0002 7 6 2.5149 -3.9880 0.0003 8 8 2.8060 -4.5215 -1.0520 9 6 2.8775 -4.6336 1.2830 10 6 3.9100 -5.5688 1.3179 11 6 4.2417 -6.1607 2.5255 12 6 3.5212 -5.8046 3.6569 13 17 3.8914 -6.5218 5.1938 14 6 2.5019 -4.8701 3.5471 15 7 2.2125 -4.3202 2.3882 16 6 1.4992 -2.1542 -1.2642 17 6 2.0399 -0.7209 -1.2500 18 1 3.1296 -0.7432 -1.2381 19 6 1.5578 0.0197 -2.4990 20 7 2.1420 -0.6007 -3.6906 21 6 1.8511 -0.1045 -4.9333 22 1 1.1913 0.7444 -5.0350 23 6 2.4052 -0.6920 -6.0624 24 7 3.2097 -1.7263 -5.9385 25 14 2.0090 -0.0148 -7.7576 26 1 1.0877 1.1424 -7.6254 27 1 3.2630 0.4247 -8.4206 28 1 1.3616 -1.0726 -8.5744 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5134 0.8902 31 1 -0.3633 0.5142 -0.8897 32 1 3.1293 -0.7431 1.2384 33 1 1.6955 -0.1934 2.1398 34 1 1.9375 -2.7018 2.0986 35 1 0.4144 -2.1345 1.3699 36 1 4.4471 -5.8252 0.4167 37 1 5.0402 -6.8854 2.5846 38 1 1.9390 -4.5899 4.4251 39 1 0.4144 -2.1346 -1.3673 40 1 1.9379 -2.7020 -2.0982 41 1 0.4706 -0.0349 -2.5569 42 1 1.8667 1.0636 -2.4444 43 1 2.7344 -1.3634 -3.5993 44 1 3.5966 -2.1371 -6.7275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133259758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:49 Heat of formation + Delta-G solvation = 19.840756 kcal Electronic energy + Delta-G solvation = -27046.223018 eV Core-core repulsion = 23218.194236 eV Total energy + Delta-G solvation = -3828.028783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.22931 -39.71823 -37.98828 -37.13120 -34.97037 -33.69832 -32.86232 -31.91175 -31.54208 -29.72774 -27.64853 -26.07438 -25.04829 -24.19791 -23.74031 -23.07647 -21.14760 -20.51697 -18.51938 -17.61254 -17.42361 -16.96178 -16.80706 -15.98616 -15.34261 -15.31497 -14.91425 -14.86159 -14.40832 -14.29492 -13.87221 -13.80645 -13.45236 -13.20697 -12.99857 -12.88052 -12.68725 -12.47450 -12.29551 -11.98964 -11.66344 -11.55920 -11.20181 -10.98101 -10.88510 -10.77905 -10.64790 -10.42472 -10.28673 -10.17946 -10.14448 -9.91958 -9.59165 -9.46655 -9.23692 -8.81625 -8.40023 -6.84764 -5.68660 -2.98027 0.10067 0.61660 1.45703 2.50211 2.93199 3.35063 3.47826 3.52834 3.55532 3.77446 4.15605 4.26270 4.39920 4.59726 4.63812 4.91776 4.98054 4.99728 5.18887 5.26399 5.33511 5.37722 5.44133 5.60387 5.65047 5.68031 5.75020 5.80344 5.88202 5.98582 6.03675 6.07844 6.14458 6.22163 6.39431 6.40454 6.43659 6.61779 6.71381 6.81828 6.94134 7.11507 7.49710 7.76456 8.15997 8.49262 9.60259 10.18599 10.52792 11.53797 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.018642 B = 0.002604 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.624570 B =10750.285511 C =11990.147431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.086 4.086 3 H 0.071 0.929 4 C -0.130 4.130 5 C 0.076 3.924 6 N -0.585 5.585 7 C 0.561 3.439 8 O -0.520 6.520 9 C 0.094 3.906 10 C -0.099 4.099 11 C -0.069 4.069 12 C -0.075 4.075 13 Cl -0.050 7.050 14 C 0.106 3.894 15 N -0.433 5.433 16 C 0.117 3.883 17 C -0.101 4.101 18 H 0.073 0.927 19 C 0.161 3.839 20 N -0.733 5.733 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.930 5.930 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.133 0.867 35 H 0.069 0.931 36 H 0.160 0.840 37 H 0.154 0.846 38 H 0.173 0.827 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.023 0.977 42 H 0.021 0.979 43 H 0.385 0.615 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.739 -6.557 26.457 27.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.105 4.105 3 H 0.090 0.910 4 C -0.168 4.168 5 C -0.046 4.046 6 N -0.316 5.316 7 C 0.347 3.653 8 O -0.395 6.395 9 C -0.043 4.043 10 C -0.120 4.120 11 C -0.095 4.095 12 C -0.104 4.104 13 Cl -0.021 7.021 14 C -0.053 4.053 15 N -0.146 5.146 16 C -0.004 4.004 17 C -0.120 4.120 18 H 0.091 0.909 19 C 0.033 3.967 20 N -0.378 5.378 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.578 5.578 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.219 1.219 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.149 0.851 35 H 0.087 0.913 36 H 0.177 0.823 37 H 0.171 0.829 38 H 0.190 0.810 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.041 0.959 42 H 0.039 0.961 43 H 0.219 0.781 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.305 -6.185 25.785 26.549 hybrid contribution 0.720 -0.475 -0.691 1.105 sum -0.585 -6.660 25.094 25.970 Atomic orbital electron populations 1.21978 0.95244 1.02002 1.01675 1.21090 0.96033 0.99296 0.94079 0.91022 1.21990 1.00811 0.95855 0.98181 1.22797 1.00995 0.93415 0.87433 1.48008 1.54965 1.19978 1.08614 1.17804 0.78866 0.81654 0.87018 1.90888 1.54021 1.63503 1.31100 1.21498 0.94224 0.95786 0.92831 1.22184 0.96404 0.94254 0.99149 1.21603 0.98765 0.98683 0.90445 1.22330 0.99720 0.99603 0.88761 1.98403 1.93826 1.82204 1.27648 1.22987 0.93923 0.91904 0.96509 1.67842 1.26482 1.21987 0.98249 1.21844 1.00150 0.93062 0.85328 1.21678 1.00810 0.94279 0.95278 0.90894 1.20683 0.96003 0.94722 0.85332 1.42432 1.56948 1.37585 1.00832 1.19246 1.23158 1.10886 0.83781 0.91200 1.24756 1.00103 0.98361 0.97804 1.69687 1.35546 1.24221 1.28352 0.86139 0.77359 0.77949 0.84870 1.20620 1.21951 1.21901 0.92405 0.93184 0.91883 0.92016 0.91036 0.85102 0.91280 0.82267 0.82876 0.81024 0.91034 0.87871 0.95894 0.96149 0.78138 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.11 37.16 0.30 -1.49 16 2 C -0.09 -1.10 2.71 -90.58 -0.25 -1.35 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.13 -1.43 5.62 -26.61 -0.15 -1.58 16 5 C 0.08 0.87 5.52 -3.71 -0.02 0.85 16 6 N -0.58 -8.69 2.97 -173.79 -0.52 -9.20 16 7 C 0.56 8.92 7.61 -12.21 -0.09 8.83 16 8 O -0.52 -10.27 15.94 5.34 0.09 -10.19 16 9 C 0.09 1.15 6.45 -83.01 -0.54 0.61 16 10 C -0.10 -1.00 9.62 -39.07 -0.38 -1.38 16 11 C -0.07 -0.52 9.97 -39.28 -0.39 -0.91 16 12 C -0.08 -0.56 6.35 -39.21 -0.25 -0.81 16 13 Cl -0.05 -0.32 28.99 -51.86 -1.50 -1.82 16 14 C 0.11 0.82 10.98 -17.52 -0.19 0.62 16 15 N -0.43 -4.43 6.38 -9.77 -0.06 -4.50 16 16 C 0.12 2.02 5.05 -3.71 -0.02 2.00 16 17 C -0.10 -1.68 2.15 -90.50 -0.19 -1.87 16 18 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 19 C 0.16 3.25 5.19 -4.05 -0.02 3.23 16 20 N -0.73 -19.01 5.38 -59.91 -0.32 -19.34 16 21 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 22 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -29.05 13.06 55.49 0.72 -28.32 16 25 Si 0.91 22.94 29.55 -169.99 -5.02 17.91 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 H 0.06 0.70 4.98 -51.93 -0.26 0.44 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.81 6.58 -51.93 -0.34 0.47 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.13 1.40 3.99 -78.49 -0.31 1.08 16 35 H 0.07 0.76 6.70 -51.93 -0.35 0.41 16 36 H 0.16 1.59 7.80 -52.49 -0.41 1.18 16 37 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.17 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.07 1.20 6.69 -51.93 -0.35 0.85 16 40 H 0.10 2.19 6.21 -51.93 -0.32 1.87 16 41 H 0.02 0.46 6.73 -51.93 -0.35 0.11 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.38 10.67 6.90 -40.82 -0.28 10.39 16 44 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 362.10 15.07 5.46 5.46 Total: -1.00 -33.37 362.10 -9.49 -42.86 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.90 Total: 7.90 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -2.43 Total: -0.76 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -0.18 Total: -61.36 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.50 Total: -1.82 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.37 -9.49 -42.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133259758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.700 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds