Wall clock time and date at job start Tue Mar 31 2020 20:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.45964 * 2 1 4 4 C 1.53035 * 109.45086 * 119.96637 * 2 1 3 5 5 C 1.53200 * 109.31388 * 58.64693 * 4 2 1 6 6 N 1.46918 * 108.77278 * 54.63638 * 5 4 2 7 7 C 1.34775 * 120.62865 * 126.41258 * 6 5 4 8 8 O 1.21526 * 119.99999 * 179.77857 * 7 6 5 9 9 C 1.48108 * 120.00400 * 359.78547 * 7 6 5 10 10 C 1.39344 * 119.71169 * 201.82981 * 9 7 6 11 11 C 1.38520 * 119.07859 * 179.74771 * 10 9 7 12 12 C 1.38775 * 118.47571 * 0.51738 * 11 10 9 13 13 Cl 1.73598 * 120.33581 * 179.72366 * 12 11 10 14 14 C 1.38717 * 119.32727 * 359.74802 * 12 11 10 15 15 N 1.31492 * 120.87686 * 359.97438 * 14 12 11 16 16 C 1.46928 * 118.74116 * 306.38944 * 6 5 4 17 17 C 1.53044 * 109.45926 * 240.02657 * 2 1 3 18 18 H 1.09001 * 109.49811 * 181.40826 * 17 2 1 19 19 C 1.53001 * 109.49763 * 61.34043 * 17 2 1 20 20 N 1.46493 * 109.47228 * 175.06440 * 19 17 2 21 21 C 1.36935 * 120.00270 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99882 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00274 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99731 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00184 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47297 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47279 * 120.00003 * 25 23 21 28 28 H 1.48497 * 109.47518 * 240.00369 * 25 23 21 29 29 H 1.09005 * 109.47131 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46974 * 299.97233 * 1 2 3 31 31 H 1.08997 * 109.47196 * 59.97755 * 1 2 3 32 32 H 1.09000 * 109.49973 * 178.59824 * 4 2 1 33 33 H 1.09001 * 109.49943 * 298.69818 * 4 2 1 34 34 H 1.09001 * 109.58503 * 174.42380 * 5 4 2 35 35 H 1.08995 * 109.58377 * 294.70449 * 5 4 2 36 36 H 1.08002 * 120.46008 * 0.02562 * 10 9 7 37 37 H 1.08002 * 120.76149 * 180.28588 * 11 10 9 38 38 H 1.07997 * 119.56577 * 180.02562 * 14 12 11 39 39 H 1.08995 * 109.58715 * 293.82698 * 16 6 5 40 40 H 1.08997 * 109.58473 * 173.39704 * 16 6 5 41 41 H 1.09005 * 109.47338 * 295.06631 * 19 17 2 42 42 H 1.09003 * 109.47256 * 55.06532 * 19 17 2 43 43 H 0.97004 * 119.99808 * 0.02562 * 20 19 17 44 44 H 0.96998 * 119.99576 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7208 1.2501 5 6 1.4990 -2.1542 1.2643 6 7 1.8620 -2.8089 0.0002 7 6 2.5149 -3.9880 0.0003 8 8 2.8060 -4.5215 -1.0520 9 6 2.8775 -4.6336 1.2830 10 6 3.9100 -5.5688 1.3179 11 6 4.2417 -6.1607 2.5255 12 6 3.5212 -5.8046 3.6569 13 17 3.8914 -6.5218 5.1938 14 6 2.5019 -4.8701 3.5471 15 7 2.2125 -4.3202 2.3882 16 6 1.4992 -2.1542 -1.2642 17 6 2.0399 -0.7209 -1.2500 18 1 3.1296 -0.7432 -1.2381 19 6 1.5578 0.0197 -2.4990 20 7 2.1420 -0.6007 -3.6906 21 6 1.8511 -0.1045 -4.9333 22 1 1.1913 0.7444 -5.0350 23 6 2.4052 -0.6920 -6.0624 24 7 3.2097 -1.7263 -5.9385 25 14 2.0090 -0.0148 -7.7576 26 1 1.0877 1.1424 -7.6254 27 1 3.2630 0.4247 -8.4206 28 1 1.3616 -1.0726 -8.5744 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5134 0.8902 31 1 -0.3633 0.5142 -0.8897 32 1 3.1293 -0.7431 1.2384 33 1 1.6955 -0.1934 2.1398 34 1 1.9375 -2.7018 2.0986 35 1 0.4144 -2.1345 1.3699 36 1 4.4471 -5.8252 0.4167 37 1 5.0402 -6.8854 2.5846 38 1 1.9390 -4.5899 4.4251 39 1 0.4144 -2.1346 -1.3673 40 1 1.9379 -2.7020 -2.0982 41 1 0.4706 -0.0349 -2.5569 42 1 1.8667 1.0636 -2.4444 43 1 2.7344 -1.3634 -3.5993 44 1 3.5966 -2.1371 -6.7275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133259758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:48 Heat of formation + Delta-G solvation = -1.321519 kcal Electronic energy + Delta-G solvation = -27047.140684 eV Core-core repulsion = 23218.194236 eV Total energy + Delta-G solvation = -3828.946448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.16531 -40.74536 -39.23128 -37.73967 -36.66415 -35.05807 -33.68482 -33.50361 -32.49344 -31.36311 -28.75098 -27.55816 -26.28271 -25.09835 -24.80126 -24.59604 -22.57085 -21.63567 -19.80980 -18.95874 -18.55139 -18.25043 -17.62055 -17.06925 -16.79690 -16.48237 -16.33206 -15.83180 -15.67306 -15.34581 -15.26164 -15.06750 -14.57690 -14.52880 -14.40350 -14.09895 -13.81295 -13.64978 -13.21002 -13.05034 -12.88492 -12.78917 -12.64875 -12.47787 -12.30116 -12.10967 -11.98943 -11.90897 -11.75591 -11.47150 -11.42627 -11.22903 -11.04826 -10.94568 -10.22856 -10.11891 -9.60506 -9.00625 -7.94634 -5.24983 -0.69025 -0.04515 0.84826 1.45048 1.47074 1.48097 1.57176 1.80990 2.48705 2.55152 2.90877 3.38277 3.45484 3.57886 3.67958 3.71851 3.82171 3.84624 3.88105 4.13223 4.17486 4.32362 4.45063 4.53270 4.55535 4.60869 4.66211 4.77170 4.78064 4.80874 4.87607 4.95201 5.04673 5.11071 5.17606 5.24251 5.28452 5.31104 5.41653 5.48750 5.56269 5.66272 6.24807 6.26275 6.44271 6.96950 7.31469 8.07752 8.30184 9.29125 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.018642 B = 0.002604 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.624570 B =10750.285511 C =11990.147431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 H 0.080 0.920 4 C -0.123 4.123 5 C 0.073 3.927 6 N -0.583 5.583 7 C 0.552 3.448 8 O -0.576 6.576 9 C 0.072 3.928 10 C -0.106 4.106 11 C -0.059 4.059 12 C -0.067 4.067 13 Cl -0.032 7.032 14 C 0.113 3.887 15 N -0.439 5.439 16 C 0.127 3.873 17 C -0.088 4.088 18 H 0.050 0.950 19 C 0.160 3.840 20 N -0.748 5.748 21 C -0.243 4.243 22 H 0.079 0.921 23 C -0.081 4.081 24 N -0.972 5.972 25 Si 0.977 3.023 26 H -0.262 1.262 27 H -0.293 1.293 28 H -0.294 1.294 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.147 0.853 35 H 0.082 0.918 36 H 0.150 0.850 37 H 0.180 0.820 38 H 0.206 0.794 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.031 0.969 42 H 0.025 0.975 43 H 0.370 0.630 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.729 -5.710 29.937 30.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 H 0.098 0.902 4 C -0.161 4.161 5 C -0.047 4.047 6 N -0.313 5.313 7 C 0.340 3.660 8 O -0.456 6.456 9 C -0.063 4.063 10 C -0.127 4.127 11 C -0.085 4.085 12 C -0.096 4.096 13 Cl -0.003 7.003 14 C -0.047 4.047 15 N -0.152 5.152 16 C 0.004 3.996 17 C -0.108 4.108 18 H 0.068 0.932 19 C 0.034 3.966 20 N -0.391 5.391 21 C -0.375 4.375 22 H 0.097 0.903 23 C -0.273 4.273 24 N -0.623 5.623 25 Si 0.806 3.194 26 H -0.186 1.186 27 H -0.220 1.220 28 H -0.222 1.222 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.127 0.873 34 H 0.164 0.836 35 H 0.100 0.900 36 H 0.168 0.832 37 H 0.197 0.803 38 H 0.223 0.777 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.043 0.957 43 H 0.202 0.798 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.332 -5.283 29.326 29.889 hybrid contribution 1.022 -0.785 -1.582 2.040 sum -1.310 -6.067 27.743 28.429 Atomic orbital electron populations 1.21943 0.93983 1.01990 1.02559 1.21087 0.96980 0.99274 0.92605 0.90166 1.21983 1.00319 0.95374 0.98429 1.23101 1.01947 0.93719 0.85979 1.48114 1.54487 1.19831 1.08879 1.18460 0.77994 0.81583 0.87987 1.90844 1.56256 1.64988 1.33517 1.20936 0.96134 0.97359 0.91913 1.22169 0.96172 0.94302 1.00094 1.21836 0.99008 0.98292 0.89342 1.22424 0.99008 0.98891 0.89287 1.98422 1.93649 1.81824 1.26359 1.23511 0.93777 0.91109 0.96311 1.67679 1.26372 1.22766 0.98348 1.21488 0.99756 0.92970 0.85397 1.21530 0.99313 0.94035 0.95920 0.93182 1.20860 0.96025 0.94826 0.84917 1.42691 1.56976 1.37388 1.02026 1.19702 1.22282 1.10564 0.84951 0.90269 1.25666 1.00620 0.99039 1.01952 1.69877 1.37307 1.26035 1.29057 0.85019 0.77172 0.77581 0.79658 1.18636 1.22026 1.22151 0.92844 0.90129 0.93175 0.92847 0.87341 0.83649 0.89978 0.83195 0.80253 0.77698 0.90690 0.92893 0.95104 0.95718 0.79823 0.94129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.11 71.98 0.58 -2.55 16 2 C -0.08 -1.93 2.71 -10.77 -0.03 -1.96 16 3 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 4 C -0.12 -2.39 5.62 30.67 0.17 -2.22 16 5 C 0.07 1.56 5.52 86.37 0.48 2.04 16 6 N -0.58 -17.97 2.97 -822.02 -2.44 -20.41 16 7 C 0.55 18.73 7.61 86.86 0.66 19.40 16 8 O -0.58 -25.14 15.94 -3.80 -0.06 -25.20 16 9 C 0.07 1.78 6.45 41.90 0.27 2.05 16 10 C -0.11 -2.17 9.62 22.60 0.22 -1.95 16 11 C -0.06 -0.78 9.97 22.47 0.22 -0.56 16 12 C -0.07 -0.80 6.35 22.51 0.14 -0.65 16 13 Cl -0.03 -0.30 28.99 -2.72 -0.08 -0.38 16 14 C 0.11 1.38 10.98 84.86 0.93 2.32 16 15 N -0.44 -8.23 6.38 -184.83 -1.18 -9.40 16 16 C 0.13 4.64 5.05 86.36 0.44 5.07 16 17 C -0.09 -3.04 2.15 -10.71 -0.02 -3.06 16 18 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 19 C 0.16 6.64 5.19 86.38 0.45 7.09 16 20 N -0.75 -40.55 5.38 -343.45 -1.85 -42.40 16 21 C -0.24 -14.22 9.99 84.03 0.84 -13.38 16 22 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 23 C -0.08 -4.89 5.50 84.86 0.47 -4.42 16 24 N -0.97 -63.38 13.06 21.65 0.28 -63.10 16 25 Si 0.98 48.14 29.55 68.60 2.03 50.17 16 26 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 28 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 29 H 0.05 1.18 4.98 -2.38 -0.01 1.17 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.19 6.58 -2.39 -0.02 1.18 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 33 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.15 2.78 3.99 -54.83 -0.22 2.56 16 35 H 0.08 1.58 6.70 -2.39 -0.02 1.56 16 36 H 0.15 3.27 7.80 -2.91 -0.02 3.25 16 37 H 0.18 1.38 8.06 -2.91 -0.02 1.35 16 38 H 0.21 1.08 8.06 -2.91 -0.02 1.06 16 39 H 0.07 2.63 6.69 -2.39 -0.02 2.62 16 40 H 0.05 2.49 6.21 -2.39 -0.01 2.47 16 41 H 0.03 1.25 6.73 -2.38 -0.02 1.23 16 42 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.37 22.00 6.90 -92.71 -0.64 21.36 16 44 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -77.32 362.10 2.71 -74.61 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.19 Total: 28.91 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 5.82 Total: 7.21 kcal Atomic # 7 Polarization: -130.13 SS G_CDS: -5.19 Total: -135.31 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.06 Total: -25.20 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -77.32 2.71 -74.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133259758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.284 kcal (2) G-P(sol) polarization free energy of solvation -77.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds