Wall clock time and date at job start Tue Mar 31 2020 20:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.44596 * 2 1 4 4 C 1.53041 * 109.46225 * 119.96578 * 2 1 3 5 5 C 1.53195 * 109.30924 * 181.38690 * 4 2 1 6 6 N 1.46924 * 108.89359 * 305.29390 * 5 4 2 7 7 C 1.34779 * 120.62938 * 233.67924 * 6 5 4 8 8 O 1.21519 * 120.00122 * 172.31595 * 7 6 5 9 9 C 1.48115 * 120.00154 * 352.31088 * 7 6 5 10 10 C 1.39350 * 119.70905 * 170.52387 * 9 7 6 11 11 C 1.38518 * 119.07668 * 179.97438 * 10 9 7 12 12 C 1.38767 * 118.47884 * 0.02562 * 11 10 9 13 13 Cl 1.73607 * 120.33690 * 180.02562 * 12 11 10 14 14 C 1.38725 * 119.32510 * 359.97438 * 12 11 10 15 15 N 1.31489 * 120.87843 * 359.74494 * 14 12 11 16 16 C 1.47199 * 118.55665 * 53.54191 * 6 5 4 17 17 C 1.53041 * 109.46052 * 240.03655 * 2 1 3 18 18 H 1.08998 * 109.49762 * 298.56717 * 17 2 1 19 19 C 1.53005 * 109.49658 * 58.62998 * 17 2 1 20 20 N 1.46499 * 109.47015 * 185.00229 * 19 17 2 21 21 C 1.36934 * 120.00029 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00336 * 359.97438 * 21 20 19 23 23 C 1.38816 * 120.00139 * 180.02562 * 21 20 19 24 24 N 1.31620 * 119.99711 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00034 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46927 * 89.99672 * 25 23 21 27 27 H 1.48493 * 109.46925 * 209.99521 * 25 23 21 28 28 H 1.48497 * 109.47253 * 329.99790 * 25 23 21 29 29 H 1.09002 * 109.46866 * 300.03252 * 1 2 3 30 30 H 1.09001 * 109.47282 * 60.03435 * 1 2 3 31 31 H 1.08998 * 109.46712 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.49453 * 61.43891 * 4 2 1 33 33 H 1.08997 * 109.49553 * 301.33651 * 4 2 1 34 34 H 1.09001 * 109.58927 * 65.15709 * 5 4 2 35 35 H 1.09007 * 109.58288 * 185.43433 * 5 4 2 36 36 H 1.07999 * 120.46042 * 359.95913 * 10 9 7 37 37 H 1.07996 * 120.76005 * 180.02562 * 11 10 9 38 38 H 1.07997 * 119.55678 * 180.02562 * 14 12 11 39 39 H 1.09001 * 109.53388 * 186.67117 * 16 6 5 40 40 H 1.09003 * 109.67743 * 66.36736 * 16 6 5 41 41 H 1.09001 * 109.47141 * 304.99598 * 19 17 2 42 42 H 1.08993 * 109.47194 * 65.00059 * 19 17 2 43 43 H 0.97005 * 120.00245 * 359.97438 * 20 19 17 44 44 H 0.97004 * 119.99667 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5715 -0.6884 1.2641 6 7 4.0708 -1.2498 0.0015 7 6 4.9645 -2.2586 0.0044 8 8 5.2645 -2.8076 -1.0374 9 6 5.5811 -2.6981 1.2773 10 6 6.3479 -3.8613 1.3078 11 6 6.9189 -4.2599 2.5052 12 6 6.7029 -3.4809 3.6331 13 17 7.3962 -3.9351 5.1585 14 6 5.9282 -2.3348 3.5290 15 7 5.4029 -1.9776 2.3777 16 6 3.5714 -0.6884 -1.2643 17 6 2.0399 -0.7207 -1.2501 18 1 1.6978 -1.7555 -1.2384 19 6 1.5021 -0.0192 -2.4990 20 7 1.8910 -0.7775 -3.6906 21 6 1.5198 -0.3379 -4.9332 22 1 0.9400 0.5675 -5.0349 23 6 1.8879 -1.0567 -6.0624 24 7 2.5941 -2.1605 -5.9385 25 14 1.3809 -0.4574 -7.7574 26 1 2.4280 0.4473 -8.2962 27 1 1.2172 -1.6210 -8.6653 28 1 0.0946 0.2779 -7.6582 29 1 -0.3633 0.5144 0.8897 30 1 -0.3634 0.5133 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 1.6980 -1.7556 1.2382 33 1 1.6573 -0.2207 2.1398 34 1 3.9144 0.3411 1.3673 35 1 3.9418 -1.2823 2.0998 36 1 6.4947 -4.4440 0.4104 37 1 7.5186 -5.1565 2.5597 38 1 5.7580 -1.7255 4.4043 39 1 3.9417 -1.2843 -2.0985 40 1 3.9142 0.3409 -1.3700 41 1 0.4150 0.0382 -2.4438 42 1 1.9166 0.9871 -2.5574 43 1 2.4121 -1.5906 -3.5995 44 1 2.8516 -2.6625 -6.7276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133259759.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:53 Heat of formation + Delta-G solvation = 18.844752 kcal Electronic energy + Delta-G solvation = -26880.574900 eV Core-core repulsion = 23052.502928 eV Total energy + Delta-G solvation = -3828.071973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.20228 -39.56712 -37.88134 -37.13754 -35.01120 -33.78759 -32.93646 -31.92929 -31.53272 -29.69568 -28.20073 -25.87472 -24.84966 -24.09433 -23.10246 -22.91505 -21.15564 -20.48202 -19.41025 -17.66629 -17.52312 -16.96551 -16.78938 -15.82313 -15.46410 -15.21422 -14.79414 -14.67455 -14.33017 -14.10441 -13.89894 -13.77573 -13.44186 -13.15410 -13.09025 -12.84692 -12.59937 -12.49983 -12.36097 -11.89572 -11.72280 -11.60680 -11.41309 -10.93334 -10.88161 -10.73138 -10.60464 -10.42360 -10.32365 -10.18657 -10.11141 -9.93771 -9.57022 -9.46306 -9.14907 -8.80401 -8.42836 -6.83555 -5.67652 -2.96994 0.07426 0.60946 1.44792 2.49261 2.93995 3.41599 3.48536 3.53054 3.55221 3.72834 4.14783 4.26504 4.39099 4.59061 4.64431 4.92165 5.00225 5.01527 5.19358 5.24573 5.32791 5.38954 5.48262 5.65059 5.68564 5.71616 5.76859 5.82747 5.88747 6.01815 6.05236 6.10699 6.21152 6.26064 6.31065 6.39284 6.52573 6.61127 6.72911 6.86261 6.95387 7.10119 7.51424 7.76634 8.16214 8.50254 9.61145 10.19773 10.54014 11.54713 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.017962 B = 0.002576 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.449362 B =10864.863099 C =12200.138656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 H 0.070 0.930 4 C -0.129 4.129 5 C 0.073 3.927 6 N -0.586 5.586 7 C 0.561 3.439 8 O -0.519 6.519 9 C 0.093 3.907 10 C -0.098 4.098 11 C -0.069 4.069 12 C -0.075 4.075 13 Cl -0.050 7.050 14 C 0.106 3.894 15 N -0.433 5.433 16 C 0.118 3.882 17 C -0.100 4.100 18 H 0.074 0.926 19 C 0.159 3.841 20 N -0.733 5.733 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.930 5.930 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.140 0.860 36 H 0.161 0.839 37 H 0.154 0.846 38 H 0.173 0.827 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.027 0.973 42 H 0.018 0.982 43 H 0.385 0.615 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.034 -1.142 26.441 27.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.088 0.912 4 C -0.167 4.167 5 C -0.050 4.050 6 N -0.318 5.318 7 C 0.347 3.653 8 O -0.395 6.395 9 C -0.044 4.044 10 C -0.119 4.119 11 C -0.095 4.095 12 C -0.104 4.104 13 Cl -0.021 7.021 14 C -0.053 4.053 15 N -0.145 5.145 16 C -0.004 4.004 17 C -0.120 4.120 18 H 0.092 0.908 19 C 0.031 3.969 20 N -0.378 5.378 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.578 5.578 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.157 0.843 36 H 0.179 0.821 37 H 0.171 0.829 38 H 0.190 0.810 39 H 0.122 0.878 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.036 0.964 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.678 -0.622 25.772 26.631 hybrid contribution 0.419 -0.676 -0.711 1.067 sum 7.096 -1.298 25.061 26.079 Atomic orbital electron populations 1.21884 0.95130 1.01861 1.01603 1.21121 0.95833 0.99382 0.94162 0.91157 1.22024 0.95570 1.01070 0.98069 1.22928 0.93578 1.00698 0.87749 1.48071 1.41198 1.33837 1.08652 1.17795 0.80233 0.80449 0.86873 1.90882 1.62288 1.54533 1.31754 1.21538 0.96868 0.93104 0.92919 1.22202 0.94505 0.95992 0.99191 1.21611 0.97830 0.99532 0.90514 1.22344 1.00765 0.98297 0.88978 1.98405 1.82911 1.92067 1.28690 1.23030 0.92477 0.93174 0.96630 1.67862 1.18117 1.30022 0.98471 1.21872 0.94002 0.99117 0.85377 1.21690 0.94252 1.00780 0.95230 0.90807 1.20728 0.96854 0.94020 0.85346 1.42425 1.65393 1.29140 1.00814 1.19199 1.27863 1.06241 0.83811 0.91270 1.24755 1.00943 0.97526 0.97784 1.69679 1.42502 1.17196 1.28447 0.86211 0.77985 0.77426 0.84687 1.21779 1.21835 1.20845 0.93282 0.91717 0.92866 0.91972 0.91049 0.91828 0.84342 0.82142 0.82870 0.81004 0.87834 0.91304 0.95489 0.96399 0.78117 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.82 37.16 0.33 -1.49 16 2 C -0.09 -1.12 2.23 -90.58 -0.20 -1.32 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -1.44 5.36 -26.61 -0.14 -1.58 16 5 C 0.07 0.85 5.87 -3.71 -0.02 0.82 16 6 N -0.59 -8.78 2.98 -173.55 -0.52 -9.30 16 7 C 0.56 8.92 7.66 -12.21 -0.09 8.82 16 8 O -0.52 -10.24 15.81 5.35 0.08 -10.15 16 9 C 0.09 1.13 6.58 -83.01 -0.55 0.58 16 10 C -0.10 -0.98 9.63 -39.06 -0.38 -1.36 16 11 C -0.07 -0.51 9.97 -39.28 -0.39 -0.91 16 12 C -0.07 -0.55 6.35 -39.21 -0.25 -0.80 16 13 Cl -0.05 -0.32 28.99 -51.86 -1.50 -1.82 16 14 C 0.11 0.81 10.98 -17.52 -0.19 0.61 16 15 N -0.43 -4.37 6.13 -9.77 -0.06 -4.43 16 16 C 0.12 2.04 5.54 -3.56 -0.02 2.02 16 17 C -0.10 -1.68 1.92 -90.50 -0.17 -1.85 16 18 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 19 C 0.16 3.22 5.41 -4.04 -0.02 3.20 16 20 N -0.73 -19.08 5.38 -59.91 -0.32 -19.40 16 21 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -29.13 13.06 55.49 0.72 -28.41 16 25 Si 0.91 22.97 29.55 -169.99 -5.02 17.95 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.86 6.29 -51.93 -0.33 0.54 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.14 1.48 4.02 -84.32 -0.34 1.14 16 36 H 0.16 1.59 7.67 -52.49 -0.40 1.19 16 37 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.10 2.20 6.23 -51.93 -0.32 1.88 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.03 0.55 6.14 -51.93 -0.32 0.23 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.38 10.73 6.90 -40.82 -0.28 10.45 16 44 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 367.81 15.07 5.54 5.54 Total: -1.00 -33.40 367.81 -9.61 -43.02 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.19 Total: 7.78 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -2.35 Total: -0.78 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -0.18 Total: -61.54 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.50 Total: -1.82 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.40 -9.61 -43.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133259759.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.860 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds