Wall clock time and date at job start Tue Mar 31 2020 20:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.44596 * 2 1 4 4 C 1.53041 * 109.46225 * 119.96578 * 2 1 3 5 5 C 1.53195 * 109.30924 * 181.38690 * 4 2 1 6 6 N 1.46924 * 108.89359 * 305.29390 * 5 4 2 7 7 C 1.34779 * 120.62938 * 233.67924 * 6 5 4 8 8 O 1.21519 * 120.00122 * 172.31595 * 7 6 5 9 9 C 1.48115 * 120.00154 * 352.31088 * 7 6 5 10 10 C 1.39350 * 119.70905 * 170.52387 * 9 7 6 11 11 C 1.38518 * 119.07668 * 179.97438 * 10 9 7 12 12 C 1.38767 * 118.47884 * 0.02562 * 11 10 9 13 13 Cl 1.73607 * 120.33690 * 180.02562 * 12 11 10 14 14 C 1.38725 * 119.32510 * 359.97438 * 12 11 10 15 15 N 1.31489 * 120.87843 * 359.74494 * 14 12 11 16 16 C 1.47199 * 118.55665 * 53.54191 * 6 5 4 17 17 C 1.53041 * 109.46052 * 240.03655 * 2 1 3 18 18 H 1.08998 * 109.49762 * 298.56717 * 17 2 1 19 19 C 1.53005 * 109.49658 * 58.62998 * 17 2 1 20 20 N 1.46499 * 109.47015 * 185.00229 * 19 17 2 21 21 C 1.36934 * 120.00029 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00336 * 359.97438 * 21 20 19 23 23 C 1.38816 * 120.00139 * 180.02562 * 21 20 19 24 24 N 1.31620 * 119.99711 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00034 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46927 * 89.99672 * 25 23 21 27 27 H 1.48493 * 109.46925 * 209.99521 * 25 23 21 28 28 H 1.48497 * 109.47253 * 329.99790 * 25 23 21 29 29 H 1.09002 * 109.46866 * 300.03252 * 1 2 3 30 30 H 1.09001 * 109.47282 * 60.03435 * 1 2 3 31 31 H 1.08998 * 109.46712 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.49453 * 61.43891 * 4 2 1 33 33 H 1.08997 * 109.49553 * 301.33651 * 4 2 1 34 34 H 1.09001 * 109.58927 * 65.15709 * 5 4 2 35 35 H 1.09007 * 109.58288 * 185.43433 * 5 4 2 36 36 H 1.07999 * 120.46042 * 359.95913 * 10 9 7 37 37 H 1.07996 * 120.76005 * 180.02562 * 11 10 9 38 38 H 1.07997 * 119.55678 * 180.02562 * 14 12 11 39 39 H 1.09001 * 109.53388 * 186.67117 * 16 6 5 40 40 H 1.09003 * 109.67743 * 66.36736 * 16 6 5 41 41 H 1.09001 * 109.47141 * 304.99598 * 19 17 2 42 42 H 1.08993 * 109.47194 * 65.00059 * 19 17 2 43 43 H 0.97005 * 120.00245 * 359.97438 * 20 19 17 44 44 H 0.97004 * 119.99667 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5715 -0.6884 1.2641 6 7 4.0708 -1.2498 0.0015 7 6 4.9645 -2.2586 0.0044 8 8 5.2645 -2.8076 -1.0374 9 6 5.5811 -2.6981 1.2773 10 6 6.3479 -3.8613 1.3078 11 6 6.9189 -4.2599 2.5052 12 6 6.7029 -3.4809 3.6331 13 17 7.3962 -3.9351 5.1585 14 6 5.9282 -2.3348 3.5290 15 7 5.4029 -1.9776 2.3777 16 6 3.5714 -0.6884 -1.2643 17 6 2.0399 -0.7207 -1.2501 18 1 1.6978 -1.7555 -1.2384 19 6 1.5021 -0.0192 -2.4990 20 7 1.8910 -0.7775 -3.6906 21 6 1.5198 -0.3379 -4.9332 22 1 0.9400 0.5675 -5.0349 23 6 1.8879 -1.0567 -6.0624 24 7 2.5941 -2.1605 -5.9385 25 14 1.3809 -0.4574 -7.7574 26 1 2.4280 0.4473 -8.2962 27 1 1.2172 -1.6210 -8.6653 28 1 0.0946 0.2779 -7.6582 29 1 -0.3633 0.5144 0.8897 30 1 -0.3634 0.5133 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 1.6980 -1.7556 1.2382 33 1 1.6573 -0.2207 2.1398 34 1 3.9144 0.3411 1.3673 35 1 3.9418 -1.2823 2.0998 36 1 6.4947 -4.4440 0.4104 37 1 7.5186 -5.1565 2.5597 38 1 5.7580 -1.7255 4.4043 39 1 3.9417 -1.2843 -2.0985 40 1 3.9142 0.3409 -1.3700 41 1 0.4150 0.0382 -2.4438 42 1 1.9166 0.9871 -2.5574 43 1 2.4121 -1.5906 -3.5995 44 1 2.8516 -2.6625 -6.7276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133259759.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:52 Heat of formation + Delta-G solvation = -2.127984 kcal Electronic energy + Delta-G solvation = -26881.484346 eV Core-core repulsion = 23052.502928 eV Total energy + Delta-G solvation = -3828.981419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.11529 -40.61654 -39.14263 -37.74069 -36.65067 -35.21118 -33.73335 -33.50949 -32.50490 -31.33929 -29.31430 -27.48221 -25.87991 -25.10191 -24.64136 -23.92396 -22.57788 -21.63841 -20.60976 -19.17290 -18.57068 -18.28169 -17.58911 -16.94759 -16.75348 -16.58628 -16.08264 -15.70324 -15.54339 -15.38031 -15.18364 -15.00472 -14.68572 -14.41227 -14.25097 -14.15007 -13.98328 -13.57330 -13.17456 -13.04355 -12.95870 -12.77364 -12.63864 -12.61485 -12.34028 -12.15628 -11.99784 -11.90587 -11.79622 -11.45873 -11.41395 -11.18451 -11.06671 -10.94274 -10.19081 -10.05732 -9.64407 -8.99730 -7.94128 -5.24489 -0.71495 -0.04345 0.84590 1.44876 1.48059 1.49452 1.56445 1.81559 2.53390 2.55451 2.88349 3.38499 3.45812 3.57761 3.67183 3.71381 3.80742 3.84736 3.89894 4.11673 4.18335 4.32599 4.48164 4.55428 4.60298 4.62703 4.66155 4.75822 4.77710 4.80940 4.94945 4.95777 5.05104 5.09685 5.13532 5.22780 5.24570 5.35293 5.46134 5.48630 5.57800 5.67845 6.24601 6.26490 6.45295 6.97431 7.31708 8.08276 8.30781 9.29452 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.017962 B = 0.002576 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.449362 B =10864.863099 C =12200.138656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 H 0.083 0.917 4 C -0.122 4.122 5 C 0.070 3.930 6 N -0.586 5.586 7 C 0.552 3.448 8 O -0.576 6.576 9 C 0.071 3.929 10 C -0.105 4.105 11 C -0.059 4.059 12 C -0.066 4.066 13 Cl -0.031 7.031 14 C 0.113 3.887 15 N -0.438 5.438 16 C 0.124 3.876 17 C -0.086 4.086 18 H 0.048 0.952 19 C 0.158 3.842 20 N -0.748 5.748 21 C -0.244 4.244 22 H 0.079 0.921 23 C -0.081 4.081 24 N -0.972 5.972 25 Si 0.977 3.023 26 H -0.287 1.287 27 H -0.296 1.296 28 H -0.266 1.266 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.180 0.820 38 H 0.207 0.793 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.035 0.965 42 H 0.024 0.976 43 H 0.370 0.630 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.715 0.224 29.917 30.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 H 0.101 0.899 4 C -0.160 4.160 5 C -0.051 4.051 6 N -0.316 5.316 7 C 0.340 3.660 8 O -0.455 6.455 9 C -0.065 4.065 10 C -0.126 4.126 11 C -0.085 4.085 12 C -0.096 4.096 13 Cl -0.002 7.002 14 C -0.047 4.047 15 N -0.150 5.150 16 C 0.002 3.998 17 C -0.106 4.106 18 H 0.067 0.933 19 C 0.031 3.969 20 N -0.391 5.391 21 C -0.376 4.376 22 H 0.097 0.903 23 C -0.273 4.273 24 N -0.623 5.623 25 Si 0.806 3.194 26 H -0.214 1.214 27 H -0.223 1.223 28 H -0.190 1.190 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.127 0.873 34 H 0.096 0.904 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.198 0.802 38 H 0.224 0.776 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.052 0.948 42 H 0.042 0.958 43 H 0.202 0.798 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.320 0.799 29.309 29.993 hybrid contribution 0.578 -1.099 -1.599 2.024 sum 6.898 -0.300 27.710 28.557 Atomic orbital electron populations 1.21854 0.94254 1.01614 1.02426 1.21118 0.96472 0.99585 0.92704 0.89872 1.22014 0.94993 1.00638 0.98326 1.23243 0.93980 1.01549 0.86311 1.48186 1.40890 1.33626 1.08890 1.18458 0.79847 0.79881 0.87841 1.90839 1.64122 1.56404 1.34165 1.20961 0.98796 0.94645 0.92047 1.22183 0.94752 0.95522 1.00114 1.21844 0.97043 1.00182 0.89404 1.22440 0.99830 0.97822 0.89470 1.98423 1.82513 1.91890 1.27422 1.23554 0.91345 0.93365 0.96421 1.67670 1.18908 1.29868 0.98557 1.21548 0.94403 0.98364 0.85517 1.21536 0.93669 0.99501 0.95888 0.93303 1.20914 0.97218 0.93850 0.84906 1.42683 1.65216 1.29134 1.02018 1.19667 1.26827 1.06115 0.84969 0.90281 1.25670 1.01684 0.97964 1.01965 1.69875 1.44462 1.18849 1.29123 0.85082 0.78177 0.76704 0.79448 1.21378 1.22301 1.19035 0.90208 0.93092 0.93677 0.93018 0.87320 0.90405 0.82848 0.83103 0.80235 0.77640 0.92781 0.90786 0.94765 0.95804 0.79844 0.94132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.82 71.98 0.63 -2.63 16 2 C -0.08 -1.95 2.23 -10.77 -0.02 -1.97 16 3 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.12 -2.41 5.36 30.67 0.16 -2.25 16 5 C 0.07 1.50 5.87 86.36 0.51 2.01 16 6 N -0.59 -18.18 2.98 -821.29 -2.45 -20.63 16 7 C 0.55 18.73 7.66 86.87 0.67 19.39 16 8 O -0.58 -25.07 15.81 -3.78 -0.06 -25.13 16 9 C 0.07 1.74 6.58 41.90 0.28 2.02 16 10 C -0.10 -2.12 9.63 22.60 0.22 -1.90 16 11 C -0.06 -0.77 9.97 22.46 0.22 -0.54 16 12 C -0.07 -0.77 6.35 22.51 0.14 -0.63 16 13 Cl -0.03 -0.29 28.99 -2.72 -0.08 -0.37 16 14 C 0.11 1.35 10.98 84.86 0.93 2.29 16 15 N -0.44 -8.06 6.13 -184.82 -1.13 -9.20 16 16 C 0.12 4.59 5.54 86.31 0.48 5.07 16 17 C -0.09 -3.00 1.92 -10.71 -0.02 -3.02 16 18 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 19 C 0.16 6.57 5.41 86.38 0.47 7.03 16 20 N -0.75 -40.71 5.38 -343.45 -1.85 -42.55 16 21 C -0.24 -14.31 9.99 84.03 0.84 -13.47 16 22 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 23 C -0.08 -4.91 5.50 84.86 0.47 -4.44 16 24 N -0.97 -63.62 13.06 21.65 0.28 -63.33 16 25 Si 0.98 48.21 29.55 68.60 2.03 50.24 16 26 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 27 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 28 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 29 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.29 6.29 -2.39 -0.02 1.27 16 31 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.16 2.93 4.02 -66.34 -0.27 2.66 16 36 H 0.15 3.28 7.67 -2.91 -0.02 3.25 16 37 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.21 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.05 2.54 6.23 -2.39 -0.01 2.53 16 40 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.03 1.40 6.14 -2.39 -0.01 1.39 16 42 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.37 22.12 6.90 -92.70 -0.64 21.48 16 44 H 0.25 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -77.54 367.81 2.84 -74.69 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.13 Total: 29.32 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 5.97 Total: 6.96 kcal Atomic # 7 Polarization: -130.57 SS G_CDS: -5.15 Total: -135.71 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.06 Total: -25.13 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.24 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.37 kcal Total: -77.54 2.84 -74.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133259759.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.565 kcal (2) G-P(sol) polarization free energy of solvation -77.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds