Wall clock time and date at job start Tue Mar 31 2020 20:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.45648 * 2 1 4 4 C 1.53037 * 109.45011 * 240.03661 * 2 1 3 5 5 C 1.53195 * 109.31233 * 178.61689 * 4 2 1 6 6 N 1.46922 * 108.77336 * 54.63596 * 5 4 2 7 7 C 1.34782 * 120.63344 * 126.66586 * 6 5 4 8 8 O 1.21522 * 119.99707 * 351.86555 * 7 6 5 9 9 C 1.48104 * 120.00160 * 171.86514 * 7 6 5 10 10 C 1.39346 * 119.70697 * 170.56581 * 9 7 6 11 11 C 1.38524 * 119.07472 * 180.02562 * 10 9 7 12 12 C 1.38764 * 118.48174 * 359.97438 * 11 10 9 13 13 Cl 1.73608 * 120.33941 * 179.97438 * 12 11 10 14 14 C 1.38718 * 119.32636 * 0.02562 * 12 11 10 15 15 N 1.31493 * 120.87546 * 359.71873 * 14 12 11 16 16 C 1.46926 * 118.73937 * 306.38790 * 6 5 4 17 17 C 1.53043 * 109.46240 * 119.96798 * 2 1 3 18 18 H 1.09001 * 109.49190 * 61.42619 * 17 2 1 19 19 C 1.52996 * 109.52424 * 301.34422 * 17 2 1 20 20 N 1.46505 * 109.46800 * 175.14275 * 19 17 2 21 21 C 1.36942 * 119.99953 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99559 * 359.97438 * 21 20 19 23 23 C 1.38801 * 119.99817 * 180.02562 * 21 20 19 24 24 N 1.31615 * 120.00547 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99944 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.47054 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47539 * 119.99671 * 25 23 21 28 28 H 1.48503 * 109.47115 * 240.00117 * 25 23 21 29 29 H 1.09007 * 109.47120 * 300.02409 * 1 2 3 30 30 H 1.08997 * 109.47458 * 60.02564 * 1 2 3 31 31 H 1.08998 * 109.46771 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.49484 * 298.56888 * 4 2 1 33 33 H 1.08998 * 109.50038 * 58.63575 * 4 2 1 34 34 H 1.08994 * 109.58508 * 294.84652 * 5 4 2 35 35 H 1.09002 * 109.58442 * 174.41758 * 5 4 2 36 36 H 1.08002 * 120.46375 * 0.02562 * 10 9 7 37 37 H 1.08005 * 120.75678 * 179.97438 * 11 10 9 38 38 H 1.08000 * 119.56548 * 179.97438 * 14 12 11 39 39 H 1.09005 * 109.58944 * 173.40086 * 16 6 5 40 40 H 1.08999 * 109.58742 * 293.82590 * 16 6 5 41 41 H 1.08997 * 109.46954 * 295.14044 * 19 17 2 42 42 H 1.09000 * 109.47144 * 55.14367 * 19 17 2 43 43 H 0.96997 * 120.00048 * 0.02562 * 20 19 17 44 44 H 0.96998 * 120.00399 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7207 -1.2502 5 6 3.5711 -0.6887 -1.2645 6 7 4.0677 -1.2491 -0.0004 7 6 4.9656 -2.2543 -0.0005 8 8 5.2611 -2.8048 -1.0427 9 6 5.5921 -2.6877 1.2696 10 6 6.3646 -3.8471 1.2981 11 6 6.9440 -4.2407 2.4932 12 6 6.7312 -3.4601 3.6205 13 17 7.4339 -3.9088 5.1433 14 6 5.9505 -2.3180 3.5186 15 7 5.4169 -1.9657 2.3696 16 6 3.5714 -0.6888 1.2640 17 6 2.0399 -0.7208 1.2501 18 1 1.6977 -1.7556 1.2382 19 6 1.5031 -0.0196 2.4994 20 7 1.8954 -0.7765 3.6908 21 6 1.5255 -0.3369 4.9339 22 1 0.9450 0.5681 5.0359 23 6 1.8976 -1.0538 6.0627 24 7 2.6055 -2.1564 5.9383 25 14 1.3925 -0.4545 7.7583 26 1 0.6072 0.7990 7.6267 27 1 0.5629 -1.4913 8.4230 28 1 2.6064 -0.1943 8.5733 29 1 -0.3634 0.5142 0.8898 30 1 -0.3634 0.5134 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 1.6974 -1.7555 -1.2384 33 1 1.6565 -0.2209 -2.1398 34 1 3.9141 0.3407 -1.3676 35 1 3.9412 -1.2847 -2.0987 36 1 6.5095 -4.4307 0.4010 37 1 7.5475 -5.1349 2.5463 38 1 5.7821 -1.7078 4.3936 39 1 3.9418 -1.2848 2.0981 40 1 3.9145 0.3406 1.3670 41 1 1.9160 0.9875 2.5565 42 1 0.4158 0.0360 2.4459 43 1 2.4177 -1.5887 3.5992 44 1 2.8652 -2.6576 6.7272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133259760.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:56 Heat of formation + Delta-G solvation = 17.476473 kcal Electronic energy + Delta-G solvation = -27790.433623 eV Core-core repulsion = 23962.302318 eV Total energy + Delta-G solvation = -3828.131306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.90733 -39.38431 -37.89106 -36.62379 -34.78605 -33.92396 -32.60383 -31.90958 -31.16422 -29.71967 -28.14550 -25.49371 -24.91170 -23.80854 -23.12078 -22.71142 -21.18846 -20.17465 -19.41044 -17.51585 -17.16486 -16.95126 -16.43214 -15.72131 -15.35850 -14.87271 -14.79459 -14.46347 -14.16992 -13.97593 -13.80414 -13.63427 -13.39168 -13.11684 -12.86231 -12.80242 -12.41616 -12.28988 -11.99453 -11.82423 -11.60279 -11.41667 -11.28072 -10.96720 -10.88179 -10.79780 -10.58745 -10.32559 -10.19041 -10.16279 -9.93333 -9.85462 -9.63405 -9.00224 -8.88132 -8.75110 -8.41524 -6.87162 -5.74183 -3.01600 0.48782 1.09466 1.97796 2.70416 3.03054 3.43637 3.50422 3.51658 3.76988 4.13154 4.57714 4.60376 4.67257 4.80881 4.88341 4.95622 4.99340 5.02552 5.27331 5.41062 5.59494 5.61100 5.64835 5.70873 5.74378 5.77777 5.80704 5.85906 5.95744 6.02638 6.06443 6.10014 6.24417 6.32343 6.35678 6.45560 6.51738 6.59520 6.81865 6.95568 7.04937 7.46997 7.66933 7.73196 8.18921 8.44421 9.56281 10.14174 10.49638 11.48252 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.006783 B = 0.006281 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4126.800804 B = 4456.954235 C = 8339.821512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.070 0.930 4 C -0.126 4.126 5 C 0.109 3.891 6 N -0.587 5.587 7 C 0.573 3.427 8 O -0.545 6.545 9 C 0.078 3.922 10 C -0.107 4.107 11 C -0.075 4.075 12 C -0.066 4.066 13 Cl -0.047 7.047 14 C 0.135 3.865 15 N -0.422 5.422 16 C 0.080 3.920 17 C -0.104 4.104 18 H 0.069 0.931 19 C 0.160 3.840 20 N -0.730 5.730 21 C -0.234 4.234 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.930 5.930 25 Si 0.901 3.099 26 H -0.282 1.282 27 H -0.293 1.293 28 H -0.292 1.292 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.180 0.820 39 H 0.157 0.843 40 H 0.064 0.936 41 H 0.019 0.981 42 H 0.026 0.974 43 H 0.383 0.617 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.087 -0.764 -11.460 13.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.089 0.911 4 C -0.165 4.165 5 C -0.014 4.014 6 N -0.317 5.317 7 C 0.360 3.640 8 O -0.423 6.423 9 C -0.059 4.059 10 C -0.127 4.127 11 C -0.101 4.101 12 C -0.095 4.095 13 Cl -0.018 7.018 14 C -0.024 4.024 15 N -0.134 5.134 16 C -0.041 4.041 17 C -0.124 4.124 18 H 0.088 0.912 19 C 0.032 3.968 20 N -0.374 5.374 21 C -0.365 4.365 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.733 3.267 26 H -0.207 1.207 27 H -0.221 1.221 28 H -0.220 1.220 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.171 0.829 37 H 0.167 0.833 38 H 0.197 0.803 39 H 0.173 0.827 40 H 0.082 0.918 41 H 0.037 0.963 42 H 0.044 0.956 43 H 0.217 0.783 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.714 -0.217 -11.837 13.611 hybrid contribution 0.273 -0.713 1.316 1.521 sum 6.987 -0.931 -10.521 12.664 Atomic orbital electron populations 1.21882 0.95112 1.01866 1.01605 1.21124 0.95843 0.99380 0.94188 0.91149 1.21960 0.94662 1.01513 0.98321 1.21662 0.94338 0.98741 0.86634 1.48059 1.40970 1.34107 1.08609 1.17832 0.79406 0.79696 0.87050 1.90738 1.63919 1.55433 1.32253 1.21297 0.97750 0.93803 0.93088 1.21991 0.95712 0.96191 0.98856 1.21510 0.98500 0.99383 0.90709 1.22360 1.00327 0.98082 0.88772 1.98397 1.82245 1.92104 1.29100 1.23200 0.89727 0.93034 0.96487 1.67895 1.16860 1.30186 0.98413 1.23155 0.93254 1.01152 0.86554 1.21768 0.95224 1.00357 0.95040 0.91242 1.20708 0.96695 0.94091 0.85347 1.42368 1.65168 1.29154 1.00744 1.19251 1.27320 1.06195 0.83763 0.91319 1.24656 1.01057 0.97585 0.97460 1.69651 1.42792 1.17313 1.28149 0.86200 0.77648 0.77710 0.85126 1.20729 1.22078 1.21960 0.91686 0.93307 0.92864 0.91574 0.90955 0.91437 0.89261 0.82908 0.83269 0.80263 0.82687 0.91759 0.96315 0.95650 0.78319 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.81 37.16 0.33 -1.49 16 2 C -0.09 -1.12 2.23 -90.58 -0.20 -1.32 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.13 -1.48 5.36 -26.61 -0.14 -1.62 16 5 C 0.11 1.38 6.44 -3.71 -0.02 1.35 16 6 N -0.59 -8.93 2.97 -173.79 -0.52 -9.45 16 7 C 0.57 9.35 7.65 -12.21 -0.09 9.26 16 8 O -0.55 -9.58 15.79 5.35 0.08 -9.49 16 9 C 0.08 1.21 6.57 -83.01 -0.55 0.67 16 10 C -0.11 -1.39 9.63 -39.06 -0.38 -1.76 16 11 C -0.07 -0.88 9.97 -39.28 -0.39 -1.27 16 12 C -0.07 -0.90 6.35 -39.21 -0.25 -1.15 16 13 Cl -0.05 -0.61 28.99 -51.86 -1.50 -2.11 16 14 C 0.13 2.12 10.98 -17.52 -0.19 1.93 16 15 N -0.42 -6.92 6.14 -9.77 -0.06 -6.98 16 16 C 0.08 1.31 4.95 -3.71 -0.02 1.30 16 17 C -0.10 -1.70 1.92 -90.50 -0.17 -1.87 16 18 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 19 C 0.16 3.10 5.41 -4.04 -0.02 3.08 16 20 N -0.73 -17.64 5.38 -59.91 -0.32 -17.96 16 21 C -0.23 -6.29 9.99 -15.06 -0.15 -6.44 16 22 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 23 C -0.01 -0.32 5.50 -17.44 -0.10 -0.42 16 24 N -0.93 -26.37 13.06 55.49 0.72 -25.64 16 25 Si 0.90 21.83 29.55 -169.99 -5.02 16.81 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H 0.06 0.86 6.30 -51.93 -0.33 0.53 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.15 7.00 -51.93 -0.36 0.79 16 36 H 0.15 1.75 7.67 -52.49 -0.40 1.35 16 37 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 38 H 0.18 2.95 8.06 -52.49 -0.42 2.53 16 39 H 0.16 2.86 3.25 -83.12 -0.27 2.59 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.03 0.50 6.15 -51.93 -0.32 0.18 16 43 H 0.38 9.74 6.89 -40.82 -0.28 9.46 16 44 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 367.77 15.07 5.54 5.54 Total: -1.00 -29.66 367.77 -9.58 -39.24 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -6.16 Total: 9.82 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.35 Total: 0.22 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -0.17 Total: -60.03 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.08 Total: -9.49 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.66 -9.58 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133259760.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.720 kcal (2) G-P(sol) polarization free energy of solvation -29.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds