Wall clock time and date at job start Tue Mar 31 2020 20:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.45648 * 2 1 4 4 C 1.53037 * 109.45011 * 240.03661 * 2 1 3 5 5 C 1.53195 * 109.31233 * 178.61689 * 4 2 1 6 6 N 1.46922 * 108.77336 * 54.63596 * 5 4 2 7 7 C 1.34782 * 120.63344 * 126.66586 * 6 5 4 8 8 O 1.21522 * 119.99707 * 351.86555 * 7 6 5 9 9 C 1.48104 * 120.00160 * 171.86514 * 7 6 5 10 10 C 1.39346 * 119.70697 * 170.56581 * 9 7 6 11 11 C 1.38524 * 119.07472 * 180.02562 * 10 9 7 12 12 C 1.38764 * 118.48174 * 359.97438 * 11 10 9 13 13 Cl 1.73608 * 120.33941 * 179.97438 * 12 11 10 14 14 C 1.38718 * 119.32636 * 0.02562 * 12 11 10 15 15 N 1.31493 * 120.87546 * 359.71873 * 14 12 11 16 16 C 1.46926 * 118.73937 * 306.38790 * 6 5 4 17 17 C 1.53043 * 109.46240 * 119.96798 * 2 1 3 18 18 H 1.09001 * 109.49190 * 61.42619 * 17 2 1 19 19 C 1.52996 * 109.52424 * 301.34422 * 17 2 1 20 20 N 1.46505 * 109.46800 * 175.14275 * 19 17 2 21 21 C 1.36942 * 119.99953 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99559 * 359.97438 * 21 20 19 23 23 C 1.38801 * 119.99817 * 180.02562 * 21 20 19 24 24 N 1.31615 * 120.00547 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99944 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.47054 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47539 * 119.99671 * 25 23 21 28 28 H 1.48503 * 109.47115 * 240.00117 * 25 23 21 29 29 H 1.09007 * 109.47120 * 300.02409 * 1 2 3 30 30 H 1.08997 * 109.47458 * 60.02564 * 1 2 3 31 31 H 1.08998 * 109.46771 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.49484 * 298.56888 * 4 2 1 33 33 H 1.08998 * 109.50038 * 58.63575 * 4 2 1 34 34 H 1.08994 * 109.58508 * 294.84652 * 5 4 2 35 35 H 1.09002 * 109.58442 * 174.41758 * 5 4 2 36 36 H 1.08002 * 120.46375 * 0.02562 * 10 9 7 37 37 H 1.08005 * 120.75678 * 179.97438 * 11 10 9 38 38 H 1.08000 * 119.56548 * 179.97438 * 14 12 11 39 39 H 1.09005 * 109.58944 * 173.40086 * 16 6 5 40 40 H 1.08999 * 109.58742 * 293.82590 * 16 6 5 41 41 H 1.08997 * 109.46954 * 295.14044 * 19 17 2 42 42 H 1.09000 * 109.47144 * 55.14367 * 19 17 2 43 43 H 0.96997 * 120.00048 * 0.02562 * 20 19 17 44 44 H 0.96998 * 120.00399 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7207 -1.2502 5 6 3.5711 -0.6887 -1.2645 6 7 4.0677 -1.2491 -0.0004 7 6 4.9656 -2.2543 -0.0005 8 8 5.2611 -2.8048 -1.0427 9 6 5.5921 -2.6877 1.2696 10 6 6.3646 -3.8471 1.2981 11 6 6.9440 -4.2407 2.4932 12 6 6.7312 -3.4601 3.6205 13 17 7.4339 -3.9088 5.1433 14 6 5.9505 -2.3180 3.5186 15 7 5.4169 -1.9657 2.3696 16 6 3.5714 -0.6888 1.2640 17 6 2.0399 -0.7208 1.2501 18 1 1.6977 -1.7556 1.2382 19 6 1.5031 -0.0196 2.4994 20 7 1.8954 -0.7765 3.6908 21 6 1.5255 -0.3369 4.9339 22 1 0.9450 0.5681 5.0359 23 6 1.8976 -1.0538 6.0627 24 7 2.6055 -2.1564 5.9383 25 14 1.3925 -0.4545 7.7583 26 1 0.6072 0.7990 7.6267 27 1 0.5629 -1.4913 8.4230 28 1 2.6064 -0.1943 8.5733 29 1 -0.3634 0.5142 0.8898 30 1 -0.3634 0.5134 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 1.6974 -1.7555 -1.2384 33 1 1.6565 -0.2209 -2.1398 34 1 3.9141 0.3407 -1.3676 35 1 3.9412 -1.2847 -2.0987 36 1 6.5095 -4.4307 0.4010 37 1 7.5475 -5.1349 2.5463 38 1 5.7821 -1.7078 4.3936 39 1 3.9418 -1.2848 2.0981 40 1 3.9145 0.3406 1.3670 41 1 1.9160 0.9875 2.5565 42 1 0.4158 0.0360 2.4459 43 1 2.4177 -1.5887 3.5992 44 1 2.8652 -2.6576 6.7272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133259760.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:55 Heat of formation + Delta-G solvation = 1.201914 kcal Electronic energy + Delta-G solvation = -27791.139341 eV Core-core repulsion = 23962.302318 eV Total energy + Delta-G solvation = -3828.837024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.08046 -40.54844 -39.16354 -37.70309 -36.44477 -35.19846 -33.87230 -33.35749 -32.41062 -31.27638 -29.31854 -27.14365 -26.02622 -25.07745 -24.70906 -23.82788 -22.53372 -21.47950 -20.57261 -19.06415 -18.57882 -18.29502 -17.55944 -16.91267 -16.67701 -16.54404 -16.02073 -15.60849 -15.56960 -15.34459 -15.17201 -14.99501 -14.56480 -14.36950 -14.36587 -13.97864 -13.80010 -13.49313 -13.18220 -12.98820 -12.92434 -12.80092 -12.64525 -12.57446 -12.33654 -12.10054 -11.94515 -11.87473 -11.75574 -11.44317 -11.37393 -11.14079 -10.99978 -10.85457 -10.14282 -9.97118 -9.62263 -8.86559 -7.84227 -5.11550 -0.64276 0.02184 0.89371 1.49256 1.50351 1.51875 1.60147 1.87602 2.61200 2.61652 2.93604 3.45846 3.49475 3.62150 3.71286 3.77029 3.88464 3.91183 3.92471 4.10628 4.28918 4.34764 4.49168 4.55573 4.60909 4.62127 4.70183 4.80504 4.82958 4.84466 4.92042 4.96073 5.08542 5.13207 5.15122 5.23120 5.26510 5.40377 5.46475 5.57518 5.61276 5.76694 6.23654 6.36341 6.49178 6.96867 7.44043 8.18545 8.43950 9.37822 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.006783 B = 0.006281 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4126.800804 B = 4456.954235 C = 8339.821512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 H 0.081 0.919 4 C -0.117 4.117 5 C 0.103 3.897 6 N -0.586 5.586 7 C 0.568 3.432 8 O -0.562 6.562 9 C 0.055 3.945 10 C -0.098 4.098 11 C -0.060 4.060 12 C -0.066 4.066 13 Cl -0.040 7.040 14 C 0.114 3.886 15 N -0.439 5.439 16 C 0.085 3.915 17 C -0.093 4.093 18 H 0.048 0.952 19 C 0.161 3.839 20 N -0.739 5.739 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.063 4.063 24 N -0.954 5.954 25 Si 0.960 3.040 26 H -0.272 1.272 27 H -0.298 1.298 28 H -0.294 1.294 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.172 0.828 37 H 0.188 0.812 38 H 0.162 0.838 39 H 0.140 0.860 40 H 0.063 0.937 41 H 0.021 0.979 42 H 0.028 0.972 43 H 0.374 0.626 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.085 -0.525 -12.718 14.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 H 0.100 0.900 4 C -0.155 4.155 5 C -0.018 4.018 6 N -0.316 5.316 7 C 0.356 3.644 8 O -0.442 6.442 9 C -0.082 4.082 10 C -0.119 4.119 11 C -0.086 4.086 12 C -0.095 4.095 13 Cl -0.011 7.011 14 C -0.045 4.045 15 N -0.151 5.151 16 C -0.037 4.037 17 C -0.112 4.112 18 H 0.066 0.934 19 C 0.034 3.966 20 N -0.382 5.382 21 C -0.373 4.373 22 H 0.088 0.912 23 C -0.257 4.257 24 N -0.604 5.604 25 Si 0.791 3.209 26 H -0.197 1.197 27 H -0.226 1.226 28 H -0.221 1.221 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.190 0.810 37 H 0.205 0.795 38 H 0.179 0.821 39 H 0.156 0.844 40 H 0.081 0.919 41 H 0.039 0.961 42 H 0.046 0.954 43 H 0.206 0.794 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.689 0.061 -13.120 14.727 hybrid contribution 0.277 -0.777 1.690 1.880 sum 6.966 -0.717 -11.430 13.405 Atomic orbital electron populations 1.21847 0.94338 1.01613 1.02336 1.21105 0.96421 0.99558 0.92921 0.90030 1.21913 0.93801 1.01019 0.98784 1.21893 0.95030 0.99565 0.85309 1.48107 1.40645 1.33776 1.09061 1.18001 0.79505 0.79756 0.87149 1.90714 1.64678 1.56053 1.32727 1.21423 0.99058 0.95077 0.92664 1.22243 0.94457 0.95200 0.99971 1.21882 0.97652 0.99784 0.89240 1.22389 0.99805 0.97603 0.89699 1.98398 1.81980 1.91903 1.28861 1.23011 0.91279 0.94218 0.96019 1.67788 1.17340 1.31123 0.98813 1.22940 0.93178 1.00699 0.86875 1.21617 0.95149 0.99143 0.95337 0.93375 1.20823 0.96774 0.93891 0.85124 1.42522 1.65004 1.29213 1.01468 1.19557 1.26679 1.06013 0.85013 0.91175 1.25331 1.01747 0.98086 1.00506 1.69789 1.43897 1.18258 1.28503 0.85269 0.77051 0.77343 0.81235 1.19652 1.22605 1.22111 0.92891 0.90619 0.93617 0.92754 0.87672 0.89586 0.89293 0.81044 0.79481 0.82087 0.84398 0.91908 0.96101 0.95430 0.79376 0.94254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.81 71.98 0.63 -2.63 16 2 C -0.08 -1.96 2.23 -10.77 -0.02 -1.99 16 3 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 4 C -0.12 -2.47 5.36 30.67 0.16 -2.30 16 5 C 0.10 2.43 6.44 86.36 0.56 2.99 16 6 N -0.59 -17.62 2.97 -822.02 -2.44 -20.06 16 7 C 0.57 18.47 7.65 86.86 0.66 19.14 16 8 O -0.56 -19.38 15.79 -3.78 -0.06 -19.44 16 9 C 0.05 1.71 6.57 41.90 0.28 1.99 16 10 C -0.10 -2.44 9.63 22.60 0.22 -2.22 16 11 C -0.06 -1.30 9.97 22.46 0.22 -1.08 16 12 C -0.07 -1.78 6.35 22.51 0.14 -1.63 16 13 Cl -0.04 -1.02 28.99 -2.72 -0.08 -1.10 16 14 C 0.11 3.74 10.98 84.86 0.93 4.67 16 15 N -0.44 -14.90 6.14 -184.83 -1.13 -16.03 16 16 C 0.09 2.82 4.95 86.36 0.43 3.25 16 17 C -0.09 -3.02 1.92 -10.72 -0.02 -3.04 16 18 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 19 C 0.16 6.28 5.41 86.38 0.47 6.75 16 20 N -0.74 -36.46 5.38 -343.45 -1.85 -38.31 16 21 C -0.24 -13.07 9.99 84.03 0.84 -12.23 16 22 H 0.07 3.72 7.83 -2.91 -0.02 3.69 16 23 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 24 N -0.95 -55.24 13.06 21.65 0.28 -54.96 16 25 Si 0.96 45.26 29.55 68.60 2.03 47.28 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 27 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 28 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 29 H 0.05 1.32 6.30 -2.38 -0.02 1.31 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.09 2.15 7.00 -2.39 -0.02 2.13 16 36 H 0.17 3.60 7.67 -2.91 -0.02 3.57 16 37 H 0.19 2.63 8.06 -2.91 -0.02 2.60 16 38 H 0.16 5.73 8.06 -2.91 -0.02 5.71 16 39 H 0.14 5.27 3.25 -63.97 -0.21 5.07 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.03 1.09 6.15 -2.39 -0.01 1.07 16 43 H 0.37 19.69 6.89 -92.71 -0.64 19.05 16 44 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -64.19 367.77 2.91 -61.28 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: 0.19 Total: 32.73 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 5.97 Total: 8.61 kcal Atomic # 7 Polarization: -124.22 SS G_CDS: -5.14 Total: -129.36 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.06 Total: -19.44 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -64.19 2.91 -61.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133259760.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.486 kcal (2) G-P(sol) polarization free energy of solvation -64.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds