Wall clock time and date at job start Tue Mar 31 2020 21:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35970 * 116.99716 * 2 1 4 4 C 1.38548 * 120.08546 * 359.97438 * 3 2 1 5 5 C 1.38243 * 120.01118 * 180.02562 * 4 3 2 6 6 N 1.48028 * 119.90694 * 179.97438 * 5 4 3 7 7 O 1.21797 * 120.00280 * 0.02562 * 6 5 4 8 8 O 1.21799 * 119.99629 * 180.02562 * 6 5 4 9 9 C 1.38272 * 120.18331 * 359.95436 * 5 4 3 10 10 C 1.38194 * 120.16579 * 359.76979 * 9 5 4 11 11 C 1.38724 * 119.97926 * 0.52709 * 10 9 5 12 12 N 1.40128 * 120.08801 * 179.72639 * 11 10 9 13 13 C 1.34776 * 120.00107 * 335.18984 * 12 11 10 14 14 O 1.21297 * 119.99629 * 354.47855 * 13 12 11 15 15 C 1.50698 * 120.00290 * 174.46683 * 13 12 11 16 16 C 1.52992 * 109.47393 * 180.02562 * 15 13 12 17 17 N 1.46900 * 109.47584 * 180.02562 * 16 15 13 18 18 C 1.46897 * 111.00579 * 180.02562 * 17 16 15 19 19 H 1.09001 * 109.46463 * 325.00018 * 18 17 16 20 20 C 1.52998 * 109.47302 * 84.99633 * 18 17 16 21 21 C 1.50698 * 109.47279 * 205.00232 * 18 17 16 22 22 H 1.08006 * 119.99943 * 359.97438 * 21 18 17 23 23 C 1.37877 * 120.00125 * 179.97438 * 21 18 17 24 24 N 1.31513 * 119.99908 * 0.02562 * 23 21 18 25 25 Si 1.86802 * 119.99842 * 179.97438 * 23 21 18 26 26 H 1.48507 * 109.46960 * 269.99632 * 25 23 21 27 27 H 1.48497 * 109.47484 * 30.00239 * 25 23 21 28 28 H 1.48502 * 109.46671 * 150.00257 * 25 23 21 29 29 H 1.09004 * 109.47351 * 300.00233 * 1 2 3 30 30 H 1.09008 * 109.47058 * 59.99956 * 1 2 3 31 31 H 1.09003 * 109.47525 * 180.02562 * 1 2 3 32 32 H 1.07997 * 119.99305 * 0.02562 * 4 3 2 33 33 H 1.08005 * 119.91901 * 180.02562 * 9 5 4 34 34 H 1.07997 * 120.01464 * 180.25993 * 10 9 5 35 35 H 0.97002 * 120.00167 * 155.19740 * 12 11 10 36 36 H 1.09005 * 109.47044 * 60.00237 * 15 13 12 37 37 H 1.09001 * 109.47285 * 300.01236 * 15 13 12 38 38 H 1.09010 * 109.47014 * 60.00396 * 16 15 13 39 39 H 1.09001 * 109.47631 * 300.00678 * 16 15 13 40 40 H 1.00907 * 110.99891 * 56.04560 * 17 16 15 41 41 H 1.09004 * 109.46865 * 60.00239 * 20 18 17 42 42 H 1.09005 * 109.46907 * 179.97438 * 20 18 17 43 43 H 1.08996 * 109.47298 * 300.00604 * 20 18 17 44 44 H 0.97002 * 119.99693 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2933 2.3746 -0.0005 5 6 1.9225 3.6056 -0.0011 6 7 1.1158 4.8467 -0.0022 7 8 -0.1005 4.7826 -0.0022 8 8 1.6684 5.9321 -0.0032 9 6 3.3032 3.6806 -0.0001 10 6 4.0614 2.5253 0.0062 11 6 3.4372 1.2864 0.0005 12 7 4.2039 0.1135 0.0011 13 6 5.4616 0.1302 -0.4832 14 8 5.8951 1.1329 -1.0104 15 6 6.3293 -1.0966 -0.3694 16 6 7.6978 -0.8129 -0.9916 17 7 8.5435 -2.0090 -0.8812 18 6 9.8688 -1.7730 -1.4691 19 1 9.7709 -1.1167 -2.3339 20 6 10.7780 -1.1145 -0.4296 21 6 10.4681 -3.0865 -1.9007 22 1 9.9195 -4.0050 -1.7526 23 6 11.7168 -3.1159 -2.4846 24 7 12.3851 -1.9976 -2.6644 25 14 12.4600 -4.7443 -3.0189 26 1 13.2439 -5.3222 -1.8978 27 1 11.3740 -5.6831 -3.3992 28 1 13.3529 -4.5221 -4.1845 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.2148 2.3195 -0.0005 33 1 3.7903 4.6446 -0.0001 34 1 5.1396 2.5868 0.0111 35 1 3.8295 -0.7105 0.3499 36 1 5.8560 -1.9264 -0.8945 37 1 6.4551 -1.3565 0.6817 38 1 8.1710 0.0167 -0.4660 39 1 7.5723 -0.5528 -2.0426 40 1 8.0966 -2.8082 -1.3053 41 1 10.8758 -1.7708 0.4352 42 1 11.7616 -0.9398 -0.8657 43 1 10.3445 -0.1645 -0.1174 44 1 13.2634 -2.0182 -3.0755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171642346.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:20 Heat of formation + Delta-G solvation = -44.422064 kcal Electronic energy + Delta-G solvation = -28031.679525 eV Core-core repulsion = 23760.154933 eV Total energy + Delta-G solvation = -4271.524592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.48417 -41.42049 -39.94943 -38.05191 -36.81035 -36.19167 -35.39000 -33.17929 -31.69266 -31.04635 -30.44375 -28.28888 -27.71742 -26.24653 -25.23943 -23.76060 -23.07717 -22.16905 -20.63381 -20.07416 -19.86020 -19.00671 -18.43159 -17.79966 -17.45325 -17.37856 -16.66092 -16.51189 -16.26761 -15.94778 -15.11190 -14.85454 -14.68417 -14.30885 -14.09716 -13.86355 -13.69254 -13.30293 -12.99992 -12.59336 -12.42272 -12.38166 -11.97356 -11.94073 -11.82499 -11.49009 -11.39991 -11.37804 -11.27249 -11.07692 -10.83668 -10.75896 -10.32035 -10.24107 -10.16382 -9.93244 -9.49749 -8.87643 -8.67482 -8.52111 -7.39463 -6.06700 -4.13858 -0.54179 0.50224 0.96075 1.09741 2.17573 2.32283 2.50061 2.89760 3.26484 3.33125 3.35238 3.89590 4.06832 4.17531 4.23172 4.36846 4.45420 4.55239 4.66527 4.82079 4.92510 4.98807 5.02256 5.15067 5.24539 5.29002 5.31115 5.60607 5.62801 5.68837 5.93125 6.07913 6.22627 6.39028 6.48715 6.82506 6.84661 7.10035 7.17781 7.37734 7.43762 7.66167 7.72692 7.84175 8.21736 8.29295 8.58198 8.95704 9.52177 10.99587 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.022852 B = 0.001869 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.004103 B =14974.517637 C =15907.038579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.308 6.308 3 C 0.095 3.905 4 C -0.128 4.128 5 C -0.037 4.037 6 N 0.034 4.966 7 O -0.170 6.170 8 O -0.158 6.158 9 C -0.057 4.057 10 C -0.104 4.104 11 C 0.191 3.809 12 N -0.666 5.666 13 C 0.518 3.482 14 O -0.507 6.507 15 C -0.135 4.135 16 C 0.074 3.926 17 N -0.690 5.690 18 C 0.212 3.788 19 H 0.003 0.997 20 C -0.125 4.125 21 C -0.520 4.520 22 H 0.060 0.940 23 C 0.061 3.939 24 N -0.888 5.888 25 Si 0.898 3.102 26 H -0.280 1.280 27 H -0.275 1.275 28 H -0.287 1.287 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.178 0.822 35 H 0.422 0.578 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.029 0.971 40 H 0.329 0.671 41 H 0.031 0.969 42 H 0.081 0.919 43 H 0.005 0.995 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.931 5.372 7.635 26.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.221 6.221 3 C 0.047 3.953 4 C -0.149 4.149 5 C -0.121 4.121 6 N 0.552 4.448 7 O -0.383 6.383 8 O -0.375 6.375 9 C -0.077 4.077 10 C -0.126 4.126 11 C 0.092 3.908 12 N -0.310 5.310 13 C 0.307 3.693 14 O -0.380 6.380 15 C -0.175 4.175 16 C -0.057 4.057 17 N -0.321 5.321 18 C 0.105 3.895 19 H 0.020 0.980 20 C -0.183 4.183 21 C -0.559 4.559 22 H 0.078 0.922 23 C -0.141 4.141 24 N -0.527 5.527 25 Si 0.726 3.274 26 H -0.206 1.206 27 H -0.200 1.200 28 H -0.213 1.213 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.128 0.872 32 H 0.178 0.822 33 H 0.177 0.823 34 H 0.195 0.805 35 H 0.260 0.740 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.091 0.909 39 H 0.047 0.953 40 H 0.146 0.854 41 H 0.050 0.950 42 H 0.099 0.901 43 H 0.024 0.976 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.670 5.427 7.811 25.510 hybrid contribution -0.565 -0.812 -1.083 1.467 sum -24.236 4.615 6.728 25.572 Atomic orbital electron populations 1.23229 0.76972 1.04973 1.01981 1.86076 1.22474 1.24645 1.88935 1.18297 0.90067 0.84933 1.02040 1.20726 1.01985 0.89277 1.02864 1.20732 0.91472 0.83946 1.15946 1.43542 1.01277 1.02655 0.97351 1.94518 0.95901 1.94031 1.53888 1.94553 1.74356 1.15243 1.53318 1.20955 0.90104 1.01196 0.95455 1.21423 1.02930 0.88222 0.99976 1.17569 0.87021 0.88305 0.97898 1.43807 1.14522 1.11023 1.61687 1.21401 0.80614 0.91301 0.75957 1.90699 1.72247 1.34445 1.40630 1.21740 0.96281 0.94297 1.05160 1.21644 0.90044 0.95655 0.98336 1.60756 1.04861 1.03798 1.62690 1.19105 0.83284 0.95921 0.91217 0.97963 1.21720 1.02162 0.95916 0.98536 1.21236 1.02442 0.92799 1.39387 0.92194 1.24938 0.96981 0.96542 0.95643 1.69899 1.13305 1.25916 1.43566 0.86505 0.79086 0.83663 0.78152 1.20602 1.19966 1.21270 0.92035 0.92024 0.87247 0.82236 0.82278 0.80487 0.74027 0.88490 0.87374 0.90874 0.95291 0.85371 0.94966 0.90053 0.97624 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.31 -2.06 9.91 -19.65 -0.19 -2.26 16 3 C 0.10 0.78 6.70 -39.07 -0.26 0.51 16 4 C -0.13 -1.05 8.54 -39.47 -0.34 -1.39 16 5 C -0.04 -0.36 6.85 -79.93 -0.55 -0.91 16 6 N 0.03 0.40 4.45 33.97 0.15 0.55 16 7 O -0.17 -2.05 18.44 -29.46 -0.54 -2.59 16 8 O -0.16 -2.00 18.44 -29.46 -0.54 -2.54 16 9 C -0.06 -0.53 9.55 -39.59 -0.38 -0.91 16 10 C -0.10 -1.03 8.72 -39.42 -0.34 -1.37 16 11 C 0.19 1.77 6.45 -83.49 -0.54 1.24 16 12 N -0.67 -5.70 5.29 -9.74 -0.05 -5.75 16 13 C 0.52 5.86 7.64 -10.99 -0.08 5.78 16 14 O -0.51 -7.44 13.15 5.54 0.07 -7.37 16 15 C -0.13 -1.51 5.96 -27.89 -0.17 -1.68 16 16 C 0.07 1.23 4.77 -3.83 -0.02 1.21 16 17 N -0.69 -13.66 6.30 -107.96 -0.68 -14.34 16 18 C 0.21 5.25 2.60 -68.87 -0.18 5.07 16 19 H 0.00 0.07 7.80 -51.93 -0.40 -0.33 16 20 C -0.12 -3.07 9.19 37.16 0.34 -2.73 16 21 C -0.52 -13.90 8.59 -34.44 -0.30 -14.20 16 22 H 0.06 1.56 7.62 -52.48 -0.40 1.16 16 23 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 24 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 25 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 29 H 0.06 0.17 7.66 -51.93 -0.40 -0.23 16 30 H 0.06 0.20 7.66 -51.92 -0.40 -0.20 16 31 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.16 1.03 5.84 -52.49 -0.31 0.72 16 33 H 0.16 1.29 7.60 -52.48 -0.40 0.89 16 34 H 0.18 1.91 5.79 -52.49 -0.30 1.61 16 35 H 0.42 2.51 8.34 -40.82 -0.34 2.17 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.32 7.39 -51.92 -0.38 0.94 16 39 H 0.03 0.53 8.01 -51.93 -0.42 0.11 16 40 H 0.33 6.18 8.23 -39.29 -0.32 5.86 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 43 H 0.00 0.11 7.45 -51.93 -0.39 -0.28 16 44 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 375.20 15.07 5.65 5.65 Total: -1.00 -31.96 375.20 -8.04 -40.00 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.60 Total: 4.07 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -1.91 Total: -6.73 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.05 Total: -44.07 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -1.21 Total: -14.76 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.96 -8.04 -40.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171642346.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.420 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds