Wall clock time and date at job start Tue Mar 31 2020 21:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35970 * 116.99716 * 2 1 4 4 C 1.38548 * 120.08546 * 359.97438 * 3 2 1 5 5 C 1.38243 * 120.01118 * 180.02562 * 4 3 2 6 6 N 1.48028 * 119.90694 * 179.97438 * 5 4 3 7 7 O 1.21797 * 120.00280 * 0.02562 * 6 5 4 8 8 O 1.21799 * 119.99629 * 180.02562 * 6 5 4 9 9 C 1.38272 * 120.18331 * 359.95436 * 5 4 3 10 10 C 1.38194 * 120.16579 * 359.76979 * 9 5 4 11 11 C 1.38724 * 119.97926 * 0.52709 * 10 9 5 12 12 N 1.40128 * 120.08801 * 179.72639 * 11 10 9 13 13 C 1.34776 * 120.00107 * 335.18984 * 12 11 10 14 14 O 1.21297 * 119.99629 * 354.47855 * 13 12 11 15 15 C 1.50698 * 120.00290 * 174.46683 * 13 12 11 16 16 C 1.52992 * 109.47393 * 180.02562 * 15 13 12 17 17 N 1.46900 * 109.47584 * 180.02562 * 16 15 13 18 18 C 1.46897 * 111.00579 * 180.02562 * 17 16 15 19 19 H 1.09001 * 109.46463 * 325.00018 * 18 17 16 20 20 C 1.52998 * 109.47302 * 84.99633 * 18 17 16 21 21 C 1.50698 * 109.47279 * 205.00232 * 18 17 16 22 22 H 1.08006 * 119.99943 * 359.97438 * 21 18 17 23 23 C 1.37877 * 120.00125 * 179.97438 * 21 18 17 24 24 N 1.31513 * 119.99908 * 0.02562 * 23 21 18 25 25 Si 1.86802 * 119.99842 * 179.97438 * 23 21 18 26 26 H 1.48507 * 109.46960 * 269.99632 * 25 23 21 27 27 H 1.48497 * 109.47484 * 30.00239 * 25 23 21 28 28 H 1.48502 * 109.46671 * 150.00257 * 25 23 21 29 29 H 1.09004 * 109.47351 * 300.00233 * 1 2 3 30 30 H 1.09008 * 109.47058 * 59.99956 * 1 2 3 31 31 H 1.09003 * 109.47525 * 180.02562 * 1 2 3 32 32 H 1.07997 * 119.99305 * 0.02562 * 4 3 2 33 33 H 1.08005 * 119.91901 * 180.02562 * 9 5 4 34 34 H 1.07997 * 120.01464 * 180.25993 * 10 9 5 35 35 H 0.97002 * 120.00167 * 155.19740 * 12 11 10 36 36 H 1.09005 * 109.47044 * 60.00237 * 15 13 12 37 37 H 1.09001 * 109.47285 * 300.01236 * 15 13 12 38 38 H 1.09010 * 109.47014 * 60.00396 * 16 15 13 39 39 H 1.09001 * 109.47631 * 300.00678 * 16 15 13 40 40 H 1.00907 * 110.99891 * 56.04560 * 17 16 15 41 41 H 1.09004 * 109.46865 * 60.00239 * 20 18 17 42 42 H 1.09005 * 109.46907 * 179.97438 * 20 18 17 43 43 H 1.08996 * 109.47298 * 300.00604 * 20 18 17 44 44 H 0.97002 * 119.99693 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2933 2.3746 -0.0005 5 6 1.9225 3.6056 -0.0011 6 7 1.1158 4.8467 -0.0022 7 8 -0.1005 4.7826 -0.0022 8 8 1.6684 5.9321 -0.0032 9 6 3.3032 3.6806 -0.0001 10 6 4.0614 2.5253 0.0062 11 6 3.4372 1.2864 0.0005 12 7 4.2039 0.1135 0.0011 13 6 5.4616 0.1302 -0.4832 14 8 5.8951 1.1329 -1.0104 15 6 6.3293 -1.0966 -0.3694 16 6 7.6978 -0.8129 -0.9916 17 7 8.5435 -2.0090 -0.8812 18 6 9.8688 -1.7730 -1.4691 19 1 9.7709 -1.1167 -2.3339 20 6 10.7780 -1.1145 -0.4296 21 6 10.4681 -3.0865 -1.9007 22 1 9.9195 -4.0050 -1.7526 23 6 11.7168 -3.1159 -2.4846 24 7 12.3851 -1.9976 -2.6644 25 14 12.4600 -4.7443 -3.0189 26 1 13.2439 -5.3222 -1.8978 27 1 11.3740 -5.6831 -3.3992 28 1 13.3529 -4.5221 -4.1845 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.2148 2.3195 -0.0005 33 1 3.7903 4.6446 -0.0001 34 1 5.1396 2.5868 0.0111 35 1 3.8295 -0.7105 0.3499 36 1 5.8560 -1.9264 -0.8945 37 1 6.4551 -1.3565 0.6817 38 1 8.1710 0.0167 -0.4660 39 1 7.5723 -0.5528 -2.0426 40 1 8.0966 -2.8082 -1.3053 41 1 10.8758 -1.7708 0.4352 42 1 11.7616 -0.9398 -0.8657 43 1 10.3445 -0.1645 -0.1174 44 1 13.2634 -2.0182 -3.0755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171642346.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:19 Heat of formation + Delta-G solvation = -65.979908 kcal Electronic energy + Delta-G solvation = -28032.614344 eV Core-core repulsion = 23760.154933 eV Total energy + Delta-G solvation = -4272.459411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -43.34327 -42.18655 -40.72041 -38.71792 -37.83178 -37.71716 -36.26096 -34.91611 -32.87262 -31.88847 -31.53894 -29.27368 -28.69663 -27.38945 -27.02295 -24.73815 -23.89848 -23.18765 -21.73870 -21.55227 -20.81552 -19.87858 -19.24809 -18.67594 -18.45569 -18.30568 -17.99148 -17.36851 -16.96477 -16.86683 -16.66546 -15.89695 -15.79208 -15.48243 -15.15385 -14.94521 -14.55020 -14.41417 -14.27705 -13.92364 -13.65234 -13.29965 -12.96558 -12.86556 -12.81708 -12.68462 -12.60371 -12.41185 -12.37563 -12.34584 -12.33951 -12.20641 -12.06318 -12.02089 -11.85741 -11.09417 -10.88519 -10.57199 -10.20849 -9.36992 -9.11130 -8.12721 -6.27510 -1.37882 -0.17851 0.11488 0.27622 1.31386 1.44094 1.44807 1.54810 1.60826 1.91632 2.17124 2.42240 3.15967 3.21624 3.35299 3.44133 3.48256 3.76376 3.84629 3.98619 4.12497 4.30882 4.33229 4.34597 4.35319 4.56701 4.61197 4.63989 4.76363 4.80232 4.88028 4.98740 5.03021 5.07982 5.12448 5.22700 5.28991 5.47202 5.66953 5.85593 5.94149 6.11979 6.22026 6.43480 6.44378 6.74886 6.85371 7.01693 7.43197 8.93147 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.022852 B = 0.001869 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.004103 B =14974.517637 C =15907.038579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.311 6.311 3 C 0.108 3.892 4 C -0.122 4.122 5 C -0.045 4.045 6 N 0.035 4.965 7 O -0.168 6.168 8 O -0.189 6.189 9 C -0.059 4.059 10 C -0.111 4.111 11 C 0.181 3.819 12 N -0.648 5.648 13 C 0.523 3.477 14 O -0.546 6.546 15 C -0.120 4.120 16 C 0.076 3.924 17 N -0.680 5.680 18 C 0.214 3.786 19 H -0.036 1.036 20 C -0.114 4.114 21 C -0.535 4.535 22 H 0.067 0.933 23 C 0.008 3.992 24 N -0.920 5.920 25 Si 0.966 3.034 26 H -0.275 1.275 27 H -0.264 1.264 28 H -0.288 1.288 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.131 0.869 32 H 0.180 0.820 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.437 0.563 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.055 0.945 39 H 0.008 0.992 40 H 0.338 0.662 41 H 0.033 0.967 42 H 0.054 0.946 43 H 0.018 0.982 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.030 3.057 8.365 28.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.224 6.224 3 C 0.059 3.941 4 C -0.142 4.142 5 C -0.130 4.130 6 N 0.550 4.450 7 O -0.384 6.384 8 O -0.399 6.399 9 C -0.079 4.079 10 C -0.133 4.133 11 C 0.083 3.917 12 N -0.293 5.293 13 C 0.313 3.687 14 O -0.423 6.423 15 C -0.160 4.160 16 C -0.054 4.054 17 N -0.311 5.311 18 C 0.105 3.895 19 H -0.018 1.018 20 C -0.173 4.173 21 C -0.573 4.573 22 H 0.085 0.915 23 C -0.191 4.191 24 N -0.560 5.560 25 Si 0.791 3.209 26 H -0.201 1.201 27 H -0.188 1.188 28 H -0.213 1.213 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.149 0.851 32 H 0.197 0.803 33 H 0.182 0.818 34 H 0.183 0.817 35 H 0.278 0.722 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.073 0.927 39 H 0.026 0.974 40 H 0.156 0.844 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.037 0.963 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -25.802 3.119 8.569 27.366 hybrid contribution -0.029 -0.128 -1.297 1.303 sum -25.831 2.991 7.272 27.002 Atomic orbital electron populations 1.23567 0.75100 1.06771 1.02815 1.86093 1.24319 1.23512 1.88448 1.18189 0.89531 0.85538 1.00831 1.20930 1.03011 0.88474 1.01834 1.20835 0.91478 0.83653 1.17037 1.43767 1.01308 1.03060 0.96907 1.94490 0.96329 1.94147 1.53429 1.94553 1.74384 1.16083 1.54842 1.20993 0.90112 1.01412 0.95364 1.21307 1.02428 0.88829 1.00689 1.17656 0.87743 0.88147 0.98185 1.43532 1.13482 1.11538 1.60786 1.21324 0.81270 0.90611 0.75516 1.90709 1.73217 1.35755 1.42633 1.21563 0.93033 0.95044 1.06352 1.21572 0.92520 0.93845 0.97466 1.60622 1.03585 1.05259 1.61636 1.18911 0.85893 0.94598 0.90090 1.01832 1.21548 1.00902 0.96641 0.98187 1.21599 1.02775 0.93636 1.39307 0.91533 1.25814 0.97579 0.99955 0.95771 1.70047 1.13585 1.28052 1.44292 0.85437 0.78312 0.79533 0.77598 1.20096 1.18779 1.21341 0.90902 0.91469 0.85095 0.80273 0.81820 0.81699 0.72220 0.85643 0.85037 0.92692 0.97394 0.84414 0.94825 0.92678 0.96273 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.81 113.37 1.11 1.15 16 2 O -0.31 -3.16 9.91 -93.22 -0.92 -4.09 16 3 C 0.11 1.51 6.70 22.60 0.15 1.66 16 4 C -0.12 -1.76 8.54 22.34 0.19 -1.57 16 5 C -0.05 -0.87 6.85 36.38 0.25 -0.62 16 6 N 0.04 0.81 4.45 -46.43 -0.21 0.60 16 7 O -0.17 -3.88 18.44 18.89 0.35 -3.53 16 8 O -0.19 -4.84 18.44 18.89 0.35 -4.49 16 9 C -0.06 -1.10 9.55 22.27 0.21 -0.89 16 10 C -0.11 -2.17 8.72 22.38 0.20 -1.97 16 11 C 0.18 3.10 6.45 38.19 0.25 3.34 16 12 N -0.65 -9.67 5.29 -303.13 -1.60 -11.28 16 13 C 0.52 11.12 7.64 87.66 0.67 11.79 16 14 O -0.55 -16.16 13.15 -3.08 -0.04 -16.20 16 15 C -0.12 -2.42 5.96 29.84 0.18 -2.24 16 16 C 0.08 2.53 4.77 86.30 0.41 2.94 16 17 N -0.68 -26.46 6.30 -495.46 -3.12 -29.59 16 18 C 0.21 10.75 2.60 44.17 0.11 10.86 16 19 H -0.04 -2.05 7.80 -2.39 -0.02 -2.07 16 20 C -0.11 -5.70 9.19 71.98 0.66 -5.04 16 21 C -0.53 -28.55 8.59 25.60 0.22 -28.33 16 22 H 0.07 3.38 7.62 -2.91 -0.02 3.36 16 23 C 0.01 0.43 5.30 84.65 0.45 0.87 16 24 N -0.92 -53.12 11.32 21.45 0.24 -52.88 16 25 Si 0.97 42.55 29.54 68.60 2.03 44.58 16 26 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 29 H 0.07 0.14 7.66 -2.38 -0.02 0.12 16 30 H 0.07 0.21 7.66 -2.38 -0.02 0.19 16 31 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.18 1.82 5.84 -2.91 -0.02 1.80 16 33 H 0.16 2.78 7.60 -2.91 -0.02 2.76 16 34 H 0.17 3.69 5.79 -2.91 -0.02 3.68 16 35 H 0.44 3.78 8.34 -92.71 -0.77 3.01 16 36 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.05 2.02 7.39 -2.38 -0.02 2.00 16 39 H 0.01 0.29 8.01 -2.39 -0.02 0.27 16 40 H 0.34 12.18 8.23 -89.69 -0.74 11.44 16 41 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.05 3.03 6.07 -2.38 -0.01 3.02 16 43 H 0.02 0.85 7.45 -2.39 -0.02 0.83 16 44 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -70.50 375.20 1.69 -68.81 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -0.44 Total: 16.11 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 5.06 Total: -8.04 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -4.69 Total: -93.14 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.27 Total: -28.31 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -70.50 1.69 -68.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171642346.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.827 kcal (2) G-P(sol) polarization free energy of solvation -70.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds