Wall clock time and date at job start Tue Mar 31 2020 21:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35968 * 117.00231 * 2 1 4 4 C 1.38554 * 120.08570 * 359.97438 * 3 2 1 5 5 C 1.38238 * 120.02153 * 180.02562 * 4 3 2 6 6 N 1.48021 * 119.91326 * 179.97438 * 5 4 3 7 7 O 1.21789 * 119.99931 * 359.97438 * 6 5 4 8 8 O 1.21798 * 119.99832 * 179.97438 * 6 5 4 9 9 C 1.38283 * 120.17758 * 359.95052 * 5 4 3 10 10 C 1.38207 * 120.16239 * 359.77075 * 9 5 4 11 11 C 1.38729 * 119.97972 * 0.53052 * 10 9 5 12 12 N 1.40122 * 120.08123 * 179.72332 * 11 10 9 13 13 C 1.34776 * 120.00496 * 329.86521 * 12 11 10 14 14 O 1.21296 * 119.99867 * 4.35829 * 13 12 11 15 15 C 1.50700 * 120.00045 * 184.35773 * 13 12 11 16 16 C 1.53004 * 109.47028 * 179.97438 * 15 13 12 17 17 N 1.46899 * 109.47191 * 179.97438 * 16 15 13 18 18 C 1.46897 * 111.00052 * 180.02562 * 17 16 15 19 19 H 1.08997 * 109.46787 * 35.00673 * 18 17 16 20 20 C 1.52997 * 109.47345 * 275.00254 * 18 17 16 21 21 C 1.50695 * 109.46746 * 154.99942 * 18 17 16 22 22 H 1.07996 * 120.00851 * 5.60412 * 21 18 17 23 23 C 1.37884 * 119.99578 * 185.59814 * 21 18 17 24 24 N 1.31519 * 119.99989 * 198.45691 * 23 21 18 25 25 Si 1.86793 * 120.00259 * 18.73725 * 23 21 18 26 26 H 1.48504 * 109.47358 * 179.72469 * 25 23 21 27 27 H 1.48504 * 109.46970 * 299.72274 * 25 23 21 28 28 H 1.48497 * 109.47191 * 59.71795 * 25 23 21 29 29 H 1.09000 * 109.47360 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47057 * 299.99955 * 1 2 3 31 31 H 1.09007 * 109.47096 * 59.99625 * 1 2 3 32 32 H 1.08010 * 119.98705 * 0.02562 * 4 3 2 33 33 H 1.07992 * 119.92253 * 180.02562 * 9 5 4 34 34 H 1.07997 * 120.00789 * 180.25343 * 10 9 5 35 35 H 0.97006 * 119.99663 * 149.87444 * 12 11 10 36 36 H 1.08998 * 109.47143 * 60.00358 * 15 13 12 37 37 H 1.08999 * 109.47318 * 299.99919 * 15 13 12 38 38 H 1.08998 * 109.46632 * 60.00332 * 16 15 13 39 39 H 1.08999 * 109.47240 * 300.00254 * 16 15 13 40 40 H 1.00902 * 110.99920 * 303.96093 * 17 16 15 41 41 H 1.09001 * 109.46817 * 175.19251 * 20 18 17 42 42 H 1.08994 * 109.47078 * 295.19514 * 20 18 17 43 43 H 1.08997 * 109.47221 * 55.19244 * 20 18 17 44 44 H 0.97006 * 119.99598 * 355.24330 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2935 2.3746 -0.0005 5 6 1.9225 3.6056 -0.0011 6 7 1.1159 4.8467 -0.0022 7 8 -0.1003 4.7826 -0.0032 8 8 1.6685 5.9321 -0.0022 9 6 3.3033 3.6807 0.0000 10 6 4.0616 2.5252 0.0063 11 6 3.4373 1.2863 0.0005 12 7 4.2040 0.1135 0.0011 13 6 5.4202 0.1031 -0.5795 14 8 5.8848 1.1279 -1.0325 15 6 6.2031 -1.1818 -0.6658 16 6 7.5383 -0.9195 -1.3654 17 7 8.3016 -2.1718 -1.4490 18 6 9.5928 -1.9577 -2.1159 19 1 9.9773 -0.9717 -1.8553 20 6 9.4051 -2.0477 -3.6317 21 6 10.5708 -3.0128 -1.6673 22 1 10.2405 -3.8191 -1.0292 23 6 11.8874 -2.9489 -2.0718 24 7 12.6497 -4.0184 -2.0013 25 14 12.5908 -1.3414 -2.7125 26 1 14.0184 -1.5345 -3.0730 27 1 11.8305 -0.9125 -3.9139 28 1 12.4824 -0.2994 -1.6601 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2148 2.3195 -0.0005 33 1 3.7904 4.6445 0.0000 34 1 5.1398 2.5867 0.0112 35 1 3.8593 -0.6911 0.4193 36 1 5.6335 -1.9167 -1.2346 37 1 6.3875 -1.5631 0.3386 38 1 8.1080 -0.1844 -0.7969 39 1 7.3535 -0.5384 -2.3697 40 1 8.4302 -2.5786 -0.5346 41 1 10.3441 -1.8048 -4.1291 42 1 9.1024 -3.0595 -3.9008 43 1 8.6350 -1.3427 -3.9449 44 1 12.3067 -4.8328 -1.6011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171642347.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:30 Heat of formation + Delta-G solvation = -43.969417 kcal Electronic energy + Delta-G solvation = -28121.790177 eV Core-core repulsion = 23850.285213 eV Total energy + Delta-G solvation = -4271.504964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.53275 -41.46025 -39.99904 -38.10495 -36.85790 -36.39425 -35.44763 -33.18922 -31.80970 -31.12630 -30.73221 -28.33422 -28.17352 -26.34525 -24.85180 -23.74586 -23.10010 -22.18711 -20.71512 -20.11893 -19.75032 -19.04534 -18.48550 -17.84732 -17.53936 -17.49923 -17.42431 -16.72354 -16.33557 -16.04198 -15.12069 -15.01351 -14.64754 -14.41476 -14.06177 -13.79984 -13.70470 -13.51478 -13.15526 -12.66313 -12.60458 -12.41510 -11.98051 -11.94809 -11.87260 -11.83326 -11.53416 -11.46605 -11.44347 -11.25721 -11.02149 -10.85884 -10.44169 -10.20533 -9.97512 -9.71873 -9.56337 -8.93618 -8.76163 -8.26245 -7.63234 -6.52074 -4.13005 -0.59517 0.45364 0.91469 1.04616 2.10716 2.28916 2.44912 2.83085 3.35778 3.39805 3.57456 3.85822 4.01945 4.13185 4.18013 4.41971 4.44078 4.52337 4.59857 4.76731 4.87488 4.90437 4.95397 5.05148 5.21058 5.24602 5.25845 5.45373 5.52926 5.60959 5.88095 6.03214 6.06988 6.21792 6.44098 6.45051 6.64235 6.75510 6.78054 6.90061 7.32967 7.43076 7.59340 7.67343 8.01649 8.32862 8.40038 8.88804 9.55473 10.88066 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.002001 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.986228 B =13987.666844 C =15029.104712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.307 6.307 3 C 0.100 3.900 4 C -0.131 4.131 5 C -0.033 4.033 6 N 0.033 4.967 7 O -0.168 6.168 8 O -0.158 6.158 9 C -0.061 4.061 10 C -0.100 4.100 11 C 0.185 3.815 12 N -0.666 5.666 13 C 0.520 3.480 14 O -0.510 6.510 15 C -0.135 4.135 16 C 0.070 3.930 17 N -0.682 5.682 18 C 0.190 3.810 19 H -0.005 1.005 20 C -0.139 4.139 21 C -0.607 4.607 22 H 0.060 0.940 23 C 0.032 3.968 24 N -0.902 5.902 25 Si 1.046 2.954 26 H -0.285 1.285 27 H -0.273 1.273 28 H -0.285 1.285 29 H 0.110 0.890 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.178 0.822 35 H 0.422 0.578 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.031 0.969 39 H 0.073 0.927 40 H 0.336 0.664 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.020 0.980 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.199 10.164 6.931 28.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.220 6.220 3 C 0.051 3.949 4 C -0.151 4.151 5 C -0.117 4.117 6 N 0.551 4.449 7 O -0.382 6.382 8 O -0.374 6.374 9 C -0.081 4.081 10 C -0.121 4.121 11 C 0.087 3.913 12 N -0.312 5.312 13 C 0.309 3.691 14 O -0.384 6.384 15 C -0.175 4.175 16 C -0.060 4.060 17 N -0.313 5.313 18 C 0.081 3.919 19 H 0.012 0.988 20 C -0.197 4.197 21 C -0.645 4.645 22 H 0.078 0.922 23 C -0.173 4.173 24 N -0.536 5.536 25 Si 0.874 3.126 26 H -0.211 1.211 27 H -0.199 1.199 28 H -0.211 1.211 29 H 0.128 0.872 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.178 0.822 33 H 0.177 0.823 34 H 0.195 0.805 35 H 0.260 0.740 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.153 0.847 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.039 0.961 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.264 10.464 5.338 26.958 hybrid contribution -1.755 -0.257 1.582 2.377 sum -26.019 10.208 6.920 28.794 Atomic orbital electron populations 1.23239 0.76947 1.05029 1.01991 1.86093 1.22489 1.24598 1.88801 1.18362 0.90151 0.84935 1.01432 1.20743 1.02040 0.89279 1.03059 1.20754 0.91483 0.83977 1.15478 1.43542 1.01291 1.02649 0.97393 1.94520 0.95875 1.94021 1.53792 1.94554 1.74357 1.15219 1.53277 1.20975 0.90121 1.01229 0.95729 1.21472 1.02900 0.88245 0.99436 1.17546 0.86970 0.88219 0.98567 1.43735 1.18012 1.12370 1.57035 1.21342 0.80017 0.92184 0.75586 1.90688 1.67907 1.34446 1.45348 1.21711 0.97950 0.93709 1.04094 1.21702 0.91302 0.92911 1.00104 1.60587 1.21848 1.23460 1.25401 1.19402 0.85538 0.95595 0.91353 0.98762 1.22130 0.99210 1.00116 0.98250 1.22050 0.94797 1.11672 1.36022 0.92183 1.25721 0.93924 1.02520 0.95181 1.70868 1.41467 1.01645 1.39629 0.84026 0.76300 0.75166 0.77093 1.21067 1.19927 1.21136 0.87202 0.92022 0.91995 0.82193 0.82284 0.80484 0.74045 0.87375 0.88335 0.95110 0.90822 0.84696 0.93097 0.93094 0.96072 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.31 -1.99 9.98 -19.64 -0.20 -2.18 16 3 C 0.10 0.78 6.70 -39.07 -0.26 0.52 16 4 C -0.13 -1.03 8.54 -39.46 -0.34 -1.37 16 5 C -0.03 -0.31 6.85 -79.93 -0.55 -0.86 16 6 N 0.03 0.38 4.45 33.97 0.15 0.53 16 7 O -0.17 -1.98 18.44 -29.46 -0.54 -2.52 16 8 O -0.16 -1.93 18.44 -29.46 -0.54 -2.48 16 9 C -0.06 -0.54 9.55 -39.58 -0.38 -0.92 16 10 C -0.10 -0.93 8.74 -39.41 -0.34 -1.27 16 11 C 0.18 1.64 6.40 -83.49 -0.53 1.11 16 12 N -0.67 -5.41 5.24 -9.75 -0.05 -5.46 16 13 C 0.52 5.60 7.70 -10.99 -0.08 5.52 16 14 O -0.51 -7.12 13.14 5.54 0.07 -7.05 16 15 C -0.13 -1.44 5.96 -27.88 -0.17 -1.61 16 16 C 0.07 1.11 4.77 -3.82 -0.02 1.09 16 17 N -0.68 -13.12 6.30 -107.96 -0.68 -13.80 16 18 C 0.19 4.43 2.19 -68.87 -0.15 4.28 16 19 H -0.01 -0.12 6.43 -51.93 -0.33 -0.46 16 20 C -0.14 -3.11 9.12 37.16 0.34 -2.78 16 21 C -0.61 -16.56 8.81 -34.44 -0.30 -16.86 16 22 H 0.06 1.74 7.92 -52.49 -0.42 1.33 16 23 C 0.03 0.92 5.33 -17.82 -0.10 0.82 16 24 N -0.90 -27.19 13.70 55.43 0.76 -26.43 16 25 Si 1.05 24.96 26.45 -169.99 -4.50 20.46 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 27 H -0.27 -6.08 5.56 56.52 0.31 -5.76 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H 0.11 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.15 7.66 -51.93 -0.40 -0.24 16 31 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 32 H 0.16 0.99 5.84 -52.48 -0.31 0.68 16 33 H 0.16 1.22 7.60 -52.49 -0.40 0.82 16 34 H 0.18 1.81 5.85 -52.49 -0.31 1.50 16 35 H 0.42 2.34 8.45 -40.82 -0.35 2.00 16 36 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.03 0.52 8.01 -51.93 -0.42 0.10 16 39 H 0.07 1.25 7.32 -51.93 -0.38 0.87 16 40 H 0.34 6.29 8.26 -39.29 -0.32 5.96 16 41 H 0.05 1.16 4.90 -51.93 -0.25 0.91 16 42 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.02 0.41 7.36 -51.93 -0.38 0.03 16 44 H 0.27 8.03 8.73 -40.82 -0.36 7.67 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -33.00 370.98 -7.42 -40.41 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.59 Total: 4.19 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -1.89 Total: -11.26 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.18 Total: -45.17 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -1.21 Total: -14.23 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -4.50 Total: 20.46 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.00 -7.42 -40.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171642347.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.556 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds