Wall clock time and date at job start Tue Mar 31 2020 21:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35968 * 117.00231 * 2 1 4 4 C 1.38554 * 120.08570 * 359.97438 * 3 2 1 5 5 C 1.38238 * 120.02153 * 180.02562 * 4 3 2 6 6 N 1.48021 * 119.91326 * 179.97438 * 5 4 3 7 7 O 1.21789 * 119.99931 * 359.97438 * 6 5 4 8 8 O 1.21798 * 119.99832 * 179.97438 * 6 5 4 9 9 C 1.38283 * 120.17758 * 359.95052 * 5 4 3 10 10 C 1.38207 * 120.16239 * 359.77075 * 9 5 4 11 11 C 1.38729 * 119.97972 * 0.53052 * 10 9 5 12 12 N 1.40122 * 120.08123 * 179.72332 * 11 10 9 13 13 C 1.34776 * 120.00496 * 329.86521 * 12 11 10 14 14 O 1.21296 * 119.99867 * 4.35829 * 13 12 11 15 15 C 1.50700 * 120.00045 * 184.35773 * 13 12 11 16 16 C 1.53004 * 109.47028 * 179.97438 * 15 13 12 17 17 N 1.46899 * 109.47191 * 179.97438 * 16 15 13 18 18 C 1.46897 * 111.00052 * 180.02562 * 17 16 15 19 19 H 1.08997 * 109.46787 * 35.00673 * 18 17 16 20 20 C 1.52997 * 109.47345 * 275.00254 * 18 17 16 21 21 C 1.50695 * 109.46746 * 154.99942 * 18 17 16 22 22 H 1.07996 * 120.00851 * 5.60412 * 21 18 17 23 23 C 1.37884 * 119.99578 * 185.59814 * 21 18 17 24 24 N 1.31519 * 119.99989 * 198.45691 * 23 21 18 25 25 Si 1.86793 * 120.00259 * 18.73725 * 23 21 18 26 26 H 1.48504 * 109.47358 * 179.72469 * 25 23 21 27 27 H 1.48504 * 109.46970 * 299.72274 * 25 23 21 28 28 H 1.48497 * 109.47191 * 59.71795 * 25 23 21 29 29 H 1.09000 * 109.47360 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47057 * 299.99955 * 1 2 3 31 31 H 1.09007 * 109.47096 * 59.99625 * 1 2 3 32 32 H 1.08010 * 119.98705 * 0.02562 * 4 3 2 33 33 H 1.07992 * 119.92253 * 180.02562 * 9 5 4 34 34 H 1.07997 * 120.00789 * 180.25343 * 10 9 5 35 35 H 0.97006 * 119.99663 * 149.87444 * 12 11 10 36 36 H 1.08998 * 109.47143 * 60.00358 * 15 13 12 37 37 H 1.08999 * 109.47318 * 299.99919 * 15 13 12 38 38 H 1.08998 * 109.46632 * 60.00332 * 16 15 13 39 39 H 1.08999 * 109.47240 * 300.00254 * 16 15 13 40 40 H 1.00902 * 110.99920 * 303.96093 * 17 16 15 41 41 H 1.09001 * 109.46817 * 175.19251 * 20 18 17 42 42 H 1.08994 * 109.47078 * 295.19514 * 20 18 17 43 43 H 1.08997 * 109.47221 * 55.19244 * 20 18 17 44 44 H 0.97006 * 119.99598 * 355.24330 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2935 2.3746 -0.0005 5 6 1.9225 3.6056 -0.0011 6 7 1.1159 4.8467 -0.0022 7 8 -0.1003 4.7826 -0.0032 8 8 1.6685 5.9321 -0.0022 9 6 3.3033 3.6807 0.0000 10 6 4.0616 2.5252 0.0063 11 6 3.4373 1.2863 0.0005 12 7 4.2040 0.1135 0.0011 13 6 5.4202 0.1031 -0.5795 14 8 5.8848 1.1279 -1.0325 15 6 6.2031 -1.1818 -0.6658 16 6 7.5383 -0.9195 -1.3654 17 7 8.3016 -2.1718 -1.4490 18 6 9.5928 -1.9577 -2.1159 19 1 9.9773 -0.9717 -1.8553 20 6 9.4051 -2.0477 -3.6317 21 6 10.5708 -3.0128 -1.6673 22 1 10.2405 -3.8191 -1.0292 23 6 11.8874 -2.9489 -2.0718 24 7 12.6497 -4.0184 -2.0013 25 14 12.5908 -1.3414 -2.7125 26 1 14.0184 -1.5345 -3.0730 27 1 11.8305 -0.9125 -3.9139 28 1 12.4824 -0.2994 -1.6601 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2148 2.3195 -0.0005 33 1 3.7904 4.6445 0.0000 34 1 5.1398 2.5867 0.0112 35 1 3.8593 -0.6911 0.4193 36 1 5.6335 -1.9167 -1.2346 37 1 6.3875 -1.5631 0.3386 38 1 8.1080 -0.1844 -0.7969 39 1 7.3535 -0.5384 -2.3697 40 1 8.4302 -2.5786 -0.5346 41 1 10.3441 -1.8048 -4.1291 42 1 9.1024 -3.0595 -3.9008 43 1 8.6350 -1.3427 -3.9449 44 1 12.3067 -4.8328 -1.6011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171642347.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:29 Heat of formation + Delta-G solvation = -67.462420 kcal Electronic energy + Delta-G solvation = -28122.808910 eV Core-core repulsion = 23850.285213 eV Total energy + Delta-G solvation = -4272.523697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.35338 -42.17877 -40.72326 -38.73624 -37.96066 -37.72841 -36.25587 -34.95635 -33.12280 -32.02404 -31.60624 -29.58448 -28.71693 -27.23382 -26.73934 -24.68197 -23.87901 -23.16143 -21.62860 -21.52008 -20.82212 -19.89935 -19.66688 -19.14604 -18.68492 -18.32023 -18.00622 -17.41432 -17.01991 -16.86051 -16.41589 -15.97180 -15.78201 -15.45419 -15.22690 -15.01624 -14.64545 -14.44378 -14.33925 -14.03203 -13.79372 -13.38626 -13.28590 -13.11032 -12.82999 -12.69952 -12.49069 -12.41300 -12.37335 -12.35768 -12.35405 -12.21251 -11.99237 -11.80085 -11.58354 -11.08911 -10.98346 -10.39476 -10.23079 -9.41119 -9.23756 -8.74150 -6.36854 -1.39195 -0.18414 0.10936 0.26524 1.29795 1.45467 1.50608 1.61030 1.70377 1.90613 2.15410 2.46368 3.04803 3.21462 3.29768 3.43278 3.47820 3.69815 3.83092 3.97715 4.07982 4.25975 4.31803 4.32409 4.33123 4.55416 4.55942 4.61606 4.63243 4.75108 4.84641 4.86793 4.92922 4.93069 5.00107 5.10890 5.16303 5.28677 5.59138 5.78029 5.93271 6.03042 6.10567 6.26933 6.43123 6.63844 6.79075 6.85321 7.39835 8.63704 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.002001 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.986228 B =13987.666844 C =15029.104712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.310 6.310 3 C 0.111 3.889 4 C -0.125 4.125 5 C -0.042 4.042 6 N 0.034 4.966 7 O -0.169 6.169 8 O -0.186 6.186 9 C -0.061 4.061 10 C -0.105 4.105 11 C 0.176 3.824 12 N -0.650 5.650 13 C 0.525 3.475 14 O -0.545 6.545 15 C -0.123 4.123 16 C 0.072 3.928 17 N -0.681 5.681 18 C 0.189 3.811 19 H -0.007 1.007 20 C -0.134 4.134 21 C -0.605 4.605 22 H 0.030 0.970 23 C -0.018 4.018 24 N -0.935 5.935 25 Si 1.081 2.919 26 H -0.288 1.288 27 H -0.246 1.246 28 H -0.269 1.269 29 H 0.130 0.870 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.179 0.821 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.436 0.564 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.020 0.980 39 H 0.063 0.937 40 H 0.338 0.662 41 H 0.044 0.956 42 H 0.039 0.961 43 H 0.046 0.954 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.394 10.549 6.966 31.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.223 6.223 3 C 0.062 3.938 4 C -0.146 4.146 5 C -0.127 4.127 6 N 0.549 4.451 7 O -0.385 6.385 8 O -0.397 6.397 9 C -0.081 4.081 10 C -0.126 4.126 11 C 0.078 3.922 12 N -0.296 5.296 13 C 0.314 3.686 14 O -0.422 6.422 15 C -0.163 4.163 16 C -0.058 4.058 17 N -0.312 5.312 18 C 0.079 3.921 19 H 0.010 0.990 20 C -0.192 4.192 21 C -0.643 4.643 22 H 0.048 0.952 23 C -0.217 4.217 24 N -0.571 5.571 25 Si 0.903 3.097 26 H -0.215 1.215 27 H -0.170 1.170 28 H -0.194 1.194 29 H 0.148 0.852 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.196 0.804 33 H 0.183 0.817 34 H 0.186 0.814 35 H 0.276 0.724 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.038 0.962 39 H 0.081 0.919 40 H 0.155 0.845 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -26.507 10.861 5.401 29.150 hybrid contribution -1.218 -0.506 1.638 2.104 sum -27.725 10.354 7.039 30.421 Atomic orbital electron populations 1.23562 0.75151 1.06734 1.02817 1.86107 1.24275 1.23591 1.88360 1.18268 0.89700 0.85470 1.00383 1.20935 1.03015 0.88537 1.02083 1.20859 0.91539 0.83616 1.16654 1.43776 1.01320 1.03074 0.96929 1.94495 0.96342 1.94153 1.53512 1.94552 1.74368 1.16079 1.54662 1.21029 0.90045 1.01521 0.95523 1.21375 1.02483 0.88716 1.00034 1.17642 0.87620 0.88125 0.98777 1.43491 1.17052 1.12804 1.56233 1.21239 0.80502 0.91533 0.75276 1.90694 1.68883 1.35527 1.47111 1.21553 0.95382 0.94117 1.05198 1.21672 0.93184 0.90880 1.00086 1.60494 1.19882 1.25333 1.25448 1.19277 0.86586 0.93821 0.92393 0.98951 1.22023 0.99750 1.00182 0.97257 1.22281 0.95787 1.11532 1.34700 0.95190 1.27043 0.94787 1.04477 0.95410 1.70991 1.42149 1.02022 1.41925 0.83594 0.75797 0.72097 0.78229 1.21454 1.17037 1.19449 0.85184 0.90904 0.91446 0.80374 0.81714 0.81440 0.72354 0.85613 0.85811 0.96207 0.91875 0.84453 0.93680 0.94183 0.93491 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.81 113.37 1.11 1.15 16 2 O -0.31 -3.04 9.98 -93.19 -0.93 -3.97 16 3 C 0.11 1.46 6.70 22.60 0.15 1.61 16 4 C -0.13 -1.71 8.54 22.35 0.19 -1.52 16 5 C -0.04 -0.76 6.85 36.39 0.25 -0.51 16 6 N 0.03 0.76 4.45 -46.43 -0.21 0.55 16 7 O -0.17 -3.80 18.44 18.90 0.35 -3.45 16 8 O -0.19 -4.57 18.44 18.89 0.35 -4.22 16 9 C -0.06 -1.05 9.55 22.27 0.21 -0.84 16 10 C -0.11 -1.87 8.74 22.38 0.20 -1.67 16 11 C 0.18 2.79 6.40 38.19 0.24 3.03 16 12 N -0.65 -8.90 5.24 -303.13 -1.59 -10.49 16 13 C 0.52 10.18 7.70 87.66 0.67 10.86 16 14 O -0.55 -14.59 13.14 -3.08 -0.04 -14.63 16 15 C -0.12 -2.29 5.96 29.85 0.18 -2.11 16 16 C 0.07 2.14 4.77 86.30 0.41 2.55 16 17 N -0.68 -25.20 6.30 -495.47 -3.12 -28.33 16 18 C 0.19 8.61 2.19 44.17 0.10 8.70 16 19 H -0.01 -0.32 6.43 -2.39 -0.02 -0.34 16 20 C -0.13 -5.77 9.12 71.98 0.66 -5.12 16 21 C -0.60 -33.21 8.81 25.60 0.23 -32.98 16 22 H 0.03 1.78 7.92 -2.91 -0.02 1.76 16 23 C -0.02 -1.02 5.33 84.66 0.45 -0.57 16 24 N -0.94 -57.55 13.70 21.45 0.29 -57.26 16 25 Si 1.08 49.54 26.45 68.60 1.81 51.36 16 26 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 27 H -0.25 -10.14 5.56 99.48 0.55 -9.59 16 28 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 29 H 0.13 -0.05 8.14 -2.39 -0.02 -0.06 16 30 H 0.07 0.12 7.66 -2.39 -0.02 0.10 16 31 H 0.07 0.19 7.66 -2.38 -0.02 0.17 16 32 H 0.18 1.71 5.84 -2.91 -0.02 1.69 16 33 H 0.17 2.52 7.60 -2.91 -0.02 2.50 16 34 H 0.17 3.37 5.85 -2.91 -0.02 3.36 16 35 H 0.44 3.42 8.45 -92.70 -0.78 2.63 16 36 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.02 0.64 8.01 -2.39 -0.02 0.62 16 39 H 0.06 2.02 7.32 -2.39 -0.02 2.01 16 40 H 0.34 12.26 8.26 -89.69 -0.74 11.52 16 41 H 0.04 1.96 4.90 -2.39 -0.01 1.95 16 42 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.05 1.75 7.36 -2.39 -0.02 1.74 16 44 H 0.25 15.78 8.73 -92.70 -0.81 14.97 16 Total: -1.00 -72.25 370.98 1.33 -70.92 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -0.64 Total: 16.94 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 5.05 Total: -17.42 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -4.62 Total: -95.53 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.27 Total: -26.28 kcal Atomic # 14 Polarization: 49.54 SS G_CDS: 1.81 Total: 51.36 kcal Total: -72.25 1.33 -70.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171642347.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.458 kcal (2) G-P(sol) polarization free energy of solvation -72.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds