Wall clock time and date at job start Tue Mar 31 2020 20:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.30506 * 2 1 4 4 C 1.54793 * 110.61247 * 237.81824 * 2 1 3 5 5 N 1.48147 * 104.41815 * 265.18272 * 4 2 1 6 6 C 1.34774 * 127.83713 * 140.37370 * 5 4 2 7 7 O 1.21518 * 120.00305 * 184.99447 * 6 5 4 8 8 C 1.48077 * 119.99834 * 4.98930 * 6 5 4 9 9 C 1.39864 * 120.93618 * 35.27775 * 8 6 5 10 10 C 1.38079 * 119.02319 * 180.29633 * 9 8 6 11 11 N 1.31846 * 120.93904 * 359.68097 * 10 9 8 12 12 C 1.31761 * 122.07269 * 0.02562 * 11 10 9 13 13 C 1.38357 * 120.86793 * 359.97438 * 12 11 10 14 14 Cl 1.73595 * 120.51576 * 180.02562 * 13 12 11 15 15 C 1.48143 * 104.32364 * 320.10598 * 5 4 2 16 16 C 1.54290 * 110.34110 * 122.17447 * 2 1 3 17 17 C 1.53000 * 110.34443 * 0.10452 * 16 2 1 18 18 C 1.52990 * 110.34345 * 237.84618 * 16 2 1 19 19 N 1.46503 * 109.47311 * 183.00857 * 18 16 2 20 20 C 1.36936 * 120.00044 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00258 * 0.02562 * 20 19 18 22 22 C 1.38810 * 120.00269 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99592 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00398 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47049 * 60.00035 * 24 22 20 26 26 H 1.48504 * 109.47328 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47316 * 300.00059 * 24 22 20 28 28 H 1.09001 * 109.46795 * 297.82582 * 1 2 3 29 29 H 1.08992 * 109.46742 * 57.82307 * 1 2 3 30 30 H 1.09000 * 109.47264 * 177.82673 * 1 2 3 31 31 H 1.09001 * 110.54109 * 146.44290 * 4 2 1 32 32 H 1.08997 * 110.46177 * 23.88212 * 4 2 1 33 33 H 1.08004 * 120.49231 * 359.97438 * 9 8 6 34 34 H 1.07999 * 119.53381 * 179.69740 * 10 9 8 35 35 H 1.07997 * 119.56326 * 179.97438 * 12 11 10 36 36 H 1.09004 * 110.40577 * 158.63166 * 15 5 4 37 37 H 1.09004 * 110.40895 * 281.06261 * 15 5 4 38 38 H 1.08997 * 109.47480 * 176.99261 * 17 16 2 39 39 H 1.09000 * 109.47348 * 296.99180 * 17 16 2 40 40 H 1.09002 * 109.47036 * 56.98854 * 17 16 2 41 41 H 1.09003 * 109.47480 * 303.00823 * 18 16 2 42 42 H 1.09001 * 109.47400 * 63.00670 * 18 16 2 43 43 H 0.96994 * 120.00059 * 0.02562 * 19 18 16 44 44 H 0.96997 * 119.99659 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0750 -0.7717 -1.2262 5 7 2.3176 -2.1430 -0.7211 6 6 2.0834 -3.3103 -1.3528 7 8 2.2521 -4.3621 -0.7682 8 6 1.6203 -3.3110 -2.7593 9 6 2.0731 -2.3470 -3.6658 10 6 1.6106 -2.3810 -4.9664 11 7 0.7596 -3.3082 -5.3593 12 6 0.3116 -4.2386 -4.5409 13 6 0.7222 -4.2800 -3.2203 14 17 0.1266 -5.5103 -2.1502 15 6 2.8824 -1.9401 0.6334 16 6 2.0664 -0.7704 1.2245 17 6 0.9062 -1.3037 2.0674 18 6 2.9671 0.1334 2.0687 19 7 3.5224 -0.6360 3.1849 20 6 4.3640 -0.0325 4.0809 21 1 4.6180 1.0107 3.9649 22 6 4.8906 -0.7616 5.1382 23 7 4.5814 -2.0333 5.2792 24 14 6.0380 0.0618 6.3608 25 1 5.3322 1.1901 7.0195 26 1 6.4584 -0.9254 7.3875 27 1 7.2351 0.5754 5.6478 28 1 -0.3633 0.4797 0.9089 29 1 -0.3632 0.5472 -0.8698 30 1 -0.3634 -1.0269 -0.0390 31 1 3.0058 -0.3253 -1.5763 32 1 1.3352 -0.7868 -2.0265 33 1 2.7701 -1.5840 -3.3519 34 1 1.9511 -1.6376 -5.6721 35 1 -0.3853 -4.9786 -4.9058 36 1 2.7524 -2.8379 1.2378 37 1 3.9374 -1.6735 0.5693 38 1 1.2997 -1.8898 2.8978 39 1 0.3250 -0.4675 2.4561 40 1 0.2672 -1.9337 1.4486 41 1 3.7798 0.5156 1.4510 42 1 2.3830 0.9675 2.4574 43 1 3.2946 -1.5731 3.2889 44 1 4.9491 -2.5427 6.0183 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182724240.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:25 Heat of formation + Delta-G solvation = 19.480556 kcal Electronic energy + Delta-G solvation = -27383.091259 eV Core-core repulsion = 23555.046857 eV Total energy + Delta-G solvation = -3828.044402 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.08468 -39.95697 -38.21499 -36.83426 -34.93291 -33.51475 -32.69298 -31.55475 -31.47986 -29.65505 -27.66914 -26.13030 -25.61233 -24.53929 -23.79401 -23.16723 -21.26648 -20.18776 -18.68558 -17.92976 -17.15471 -16.94436 -16.71417 -16.18267 -15.79385 -15.02288 -14.81513 -14.52776 -14.46112 -14.27680 -14.02096 -13.89108 -13.48875 -13.12161 -13.00722 -12.65619 -12.57652 -12.35220 -12.23533 -12.01512 -11.56485 -11.41258 -11.32356 -11.30828 -11.02718 -10.81158 -10.58970 -10.41076 -10.37693 -10.25479 -10.20225 -9.92078 -9.72272 -9.63278 -9.37152 -8.89125 -8.70194 -6.93666 -5.76765 -3.06071 0.27034 0.46349 1.72808 2.57262 2.74511 3.26740 3.43375 3.47852 3.49231 3.92296 4.02191 4.22247 4.34626 4.49349 4.54013 4.66402 4.76976 4.82889 5.06819 5.15831 5.25020 5.30709 5.36287 5.39175 5.44499 5.53972 5.60419 5.72418 5.85165 5.93074 5.94475 5.99991 6.05427 6.11744 6.17732 6.21901 6.40445 6.53649 6.63641 6.73204 6.82674 7.31556 7.44422 7.68288 7.98781 8.41588 9.52893 10.09794 10.44106 11.45704 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.018789 B = 0.002883 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.882327 B = 9708.331373 C =10215.277755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.090 0.910 4 C 0.097 3.903 5 N -0.611 5.611 6 C 0.570 3.430 7 O -0.507 6.507 8 C -0.069 4.069 9 C -0.133 4.133 10 C 0.098 3.902 11 N -0.458 5.458 12 C 0.110 3.890 13 C -0.049 4.049 14 Cl -0.023 7.023 15 C 0.121 3.879 16 C -0.074 4.074 17 C -0.132 4.132 18 C 0.169 3.831 19 N -0.730 5.730 20 C -0.242 4.242 21 H 0.069 0.931 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.152 0.848 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.020 0.980 42 H 0.023 0.977 43 H 0.385 0.615 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.341 1.159 -22.024 24.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.108 0.892 4 C -0.026 4.026 5 N -0.344 5.344 6 C 0.357 3.643 7 O -0.382 6.382 8 C -0.081 4.081 9 C -0.153 4.153 10 C -0.058 4.058 11 N -0.167 5.167 12 C -0.048 4.048 13 C -0.079 4.079 14 Cl 0.007 6.993 15 C 0.000 4.000 16 C -0.076 4.076 17 C -0.189 4.189 18 C 0.041 3.959 19 N -0.375 5.375 20 C -0.373 4.373 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.169 0.831 34 H 0.187 0.813 35 H 0.188 0.812 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.038 0.962 42 H 0.041 0.959 43 H 0.219 0.781 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.494 0.475 -22.403 24.744 hybrid contribution 0.927 0.125 1.708 1.948 sum -9.567 0.601 -20.695 22.807 Atomic orbital electron populations 1.21904 0.94471 1.01866 1.01685 1.22212 0.96283 0.99548 0.93584 0.89187 1.22802 1.00578 0.81837 0.97339 1.48865 1.62357 1.04850 1.18340 1.17514 0.78788 0.83128 0.84856 1.90880 1.51183 1.29965 1.66150 1.20345 0.97012 0.95100 0.95600 1.22559 1.00426 0.98176 0.94133 1.22875 0.92800 0.96056 0.94110 1.67694 1.09956 1.02452 1.36634 1.22842 0.97930 0.96713 0.87309 1.22254 0.98532 0.93454 0.93680 1.98440 1.86009 1.51013 1.63874 1.22568 0.97296 0.99309 0.80863 1.21709 0.96268 0.95076 0.94513 1.21864 0.96808 1.00777 0.99457 1.20708 0.93287 0.92823 0.89115 1.42380 1.55956 1.11031 1.28174 1.19147 1.19771 0.94639 1.03780 0.91291 1.24737 1.00996 0.95896 0.99169 1.69650 1.48397 1.06998 1.32912 0.86282 0.80789 0.78118 0.81048 1.21321 1.21718 1.21307 0.91675 0.93189 0.92489 0.90491 0.90365 0.83066 0.81342 0.81187 0.89307 0.89951 0.91509 0.92425 0.93317 0.96206 0.95920 0.78054 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 7.95 37.16 0.30 -1.14 16 2 C -0.10 -1.06 3.30 -89.00 -0.29 -1.36 16 3 H 0.09 0.91 7.71 -51.93 -0.40 0.51 16 4 C 0.10 0.95 4.84 -2.19 -0.01 0.94 16 5 N -0.61 -8.14 3.31 -170.08 -0.56 -8.70 16 6 C 0.57 8.35 7.39 -12.22 -0.09 8.26 16 7 O -0.51 -9.32 15.44 5.35 0.08 -9.24 16 8 C -0.07 -0.79 5.51 -104.62 -0.58 -1.37 16 9 C -0.13 -1.11 8.03 -39.03 -0.31 -1.42 16 10 C 0.10 0.73 11.17 -17.60 -0.20 0.53 16 11 N -0.46 -4.22 10.33 -13.28 -0.14 -4.36 16 12 C 0.11 1.01 10.99 -17.54 -0.19 0.82 16 13 C -0.05 -0.55 6.36 -38.91 -0.25 -0.80 16 14 Cl -0.02 -0.28 26.87 -51.86 -1.39 -1.67 16 15 C 0.12 1.93 5.56 -2.41 -0.01 1.92 16 16 C -0.07 -1.11 0.73 -153.11 -0.11 -1.22 16 17 C -0.13 -2.05 7.08 37.16 0.26 -1.79 16 18 C 0.17 3.12 4.85 -4.05 -0.02 3.10 16 19 N -0.73 -17.61 5.12 -59.91 -0.31 -17.92 16 20 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 21 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 24 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H 0.06 0.68 6.89 -51.93 -0.36 0.32 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.64 6.72 -51.93 -0.35 0.29 16 31 H 0.08 0.63 7.94 -51.93 -0.41 0.22 16 32 H 0.08 0.63 6.14 -51.93 -0.32 0.31 16 33 H 0.15 0.98 6.34 -52.48 -0.33 0.64 16 34 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16 35 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.09 1.66 7.56 -51.93 -0.39 1.27 16 37 H 0.08 1.39 7.86 -51.93 -0.41 0.98 16 38 H 0.07 1.24 7.01 -51.93 -0.36 0.87 16 39 H 0.06 0.85 6.98 -51.93 -0.36 0.48 16 40 H 0.05 0.71 6.62 -51.93 -0.34 0.37 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.38 9.88 6.28 -40.82 -0.26 9.62 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 364.99 15.07 5.50 5.50 Total: -1.00 -32.76 364.99 -8.83 -41.59 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.96 Total: 5.56 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.75 Total: -0.70 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.28 Total: -58.23 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.24 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.39 Total: -1.67 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.76 -8.83 -41.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182724240.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.068 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds