Wall clock time and date at job start Tue Mar 31 2020 20:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.30506 * 2 1 4 4 C 1.54793 * 110.61247 * 237.81824 * 2 1 3 5 5 N 1.48147 * 104.41815 * 265.18272 * 4 2 1 6 6 C 1.34774 * 127.83713 * 140.37370 * 5 4 2 7 7 O 1.21518 * 120.00305 * 184.99447 * 6 5 4 8 8 C 1.48077 * 119.99834 * 4.98930 * 6 5 4 9 9 C 1.39864 * 120.93618 * 35.27775 * 8 6 5 10 10 C 1.38079 * 119.02319 * 180.29633 * 9 8 6 11 11 N 1.31846 * 120.93904 * 359.68097 * 10 9 8 12 12 C 1.31761 * 122.07269 * 0.02562 * 11 10 9 13 13 C 1.38357 * 120.86793 * 359.97438 * 12 11 10 14 14 Cl 1.73595 * 120.51576 * 180.02562 * 13 12 11 15 15 C 1.48143 * 104.32364 * 320.10598 * 5 4 2 16 16 C 1.54290 * 110.34110 * 122.17447 * 2 1 3 17 17 C 1.53000 * 110.34443 * 0.10452 * 16 2 1 18 18 C 1.52990 * 110.34345 * 237.84618 * 16 2 1 19 19 N 1.46503 * 109.47311 * 183.00857 * 18 16 2 20 20 C 1.36936 * 120.00044 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00258 * 0.02562 * 20 19 18 22 22 C 1.38810 * 120.00269 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99592 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00398 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47049 * 60.00035 * 24 22 20 26 26 H 1.48504 * 109.47328 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47316 * 300.00059 * 24 22 20 28 28 H 1.09001 * 109.46795 * 297.82582 * 1 2 3 29 29 H 1.08992 * 109.46742 * 57.82307 * 1 2 3 30 30 H 1.09000 * 109.47264 * 177.82673 * 1 2 3 31 31 H 1.09001 * 110.54109 * 146.44290 * 4 2 1 32 32 H 1.08997 * 110.46177 * 23.88212 * 4 2 1 33 33 H 1.08004 * 120.49231 * 359.97438 * 9 8 6 34 34 H 1.07999 * 119.53381 * 179.69740 * 10 9 8 35 35 H 1.07997 * 119.56326 * 179.97438 * 12 11 10 36 36 H 1.09004 * 110.40577 * 158.63166 * 15 5 4 37 37 H 1.09004 * 110.40895 * 281.06261 * 15 5 4 38 38 H 1.08997 * 109.47480 * 176.99261 * 17 16 2 39 39 H 1.09000 * 109.47348 * 296.99180 * 17 16 2 40 40 H 1.09002 * 109.47036 * 56.98854 * 17 16 2 41 41 H 1.09003 * 109.47480 * 303.00823 * 18 16 2 42 42 H 1.09001 * 109.47400 * 63.00670 * 18 16 2 43 43 H 0.96994 * 120.00059 * 0.02562 * 19 18 16 44 44 H 0.96997 * 119.99659 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0750 -0.7717 -1.2262 5 7 2.3176 -2.1430 -0.7211 6 6 2.0834 -3.3103 -1.3528 7 8 2.2521 -4.3621 -0.7682 8 6 1.6203 -3.3110 -2.7593 9 6 2.0731 -2.3470 -3.6658 10 6 1.6106 -2.3810 -4.9664 11 7 0.7596 -3.3082 -5.3593 12 6 0.3116 -4.2386 -4.5409 13 6 0.7222 -4.2800 -3.2203 14 17 0.1266 -5.5103 -2.1502 15 6 2.8824 -1.9401 0.6334 16 6 2.0664 -0.7704 1.2245 17 6 0.9062 -1.3037 2.0674 18 6 2.9671 0.1334 2.0687 19 7 3.5224 -0.6360 3.1849 20 6 4.3640 -0.0325 4.0809 21 1 4.6180 1.0107 3.9649 22 6 4.8906 -0.7616 5.1382 23 7 4.5814 -2.0333 5.2792 24 14 6.0380 0.0618 6.3608 25 1 5.3322 1.1901 7.0195 26 1 6.4584 -0.9254 7.3875 27 1 7.2351 0.5754 5.6478 28 1 -0.3633 0.4797 0.9089 29 1 -0.3632 0.5472 -0.8698 30 1 -0.3634 -1.0269 -0.0390 31 1 3.0058 -0.3253 -1.5763 32 1 1.3352 -0.7868 -2.0265 33 1 2.7701 -1.5840 -3.3519 34 1 1.9511 -1.6376 -5.6721 35 1 -0.3853 -4.9786 -4.9058 36 1 2.7524 -2.8379 1.2378 37 1 3.9374 -1.6735 0.5693 38 1 1.2997 -1.8898 2.8978 39 1 0.3250 -0.4675 2.4561 40 1 0.2672 -1.9337 1.4486 41 1 3.7798 0.5156 1.4510 42 1 2.3830 0.9675 2.4574 43 1 3.2946 -1.5731 3.2889 44 1 4.9491 -2.5427 6.0183 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182724240.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:22 Heat of formation + Delta-G solvation = -1.916917 kcal Electronic energy + Delta-G solvation = -27384.019123 eV Core-core repulsion = 23555.046857 eV Total energy + Delta-G solvation = -3828.972266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.99386 -40.89897 -39.36609 -37.69136 -36.52858 -34.84185 -33.62057 -33.07065 -32.19096 -31.18716 -28.78402 -27.54060 -26.72700 -25.68800 -24.77240 -24.47692 -22.49148 -21.14946 -19.90471 -19.32777 -18.46622 -17.95131 -17.50222 -17.22038 -16.90763 -16.45018 -15.92485 -15.62745 -15.60272 -15.36193 -15.06517 -15.03541 -14.74294 -14.70297 -14.34640 -13.89062 -13.52609 -13.39461 -13.12502 -13.07299 -13.01365 -12.82481 -12.60853 -12.49690 -12.44631 -12.26631 -12.13657 -11.96249 -11.55692 -11.48968 -11.32834 -11.26731 -10.96193 -10.90385 -10.59985 -10.09848 -9.81921 -8.96026 -7.92313 -5.20665 -0.52965 -0.19593 0.91780 1.47601 1.50454 1.54274 1.56588 1.72066 2.54435 2.57496 3.11245 3.34453 3.41325 3.50474 3.52338 3.56575 3.68444 3.79136 4.05728 4.16284 4.23737 4.26903 4.33212 4.43301 4.51182 4.53061 4.60545 4.70092 4.74361 4.77869 4.81792 4.86152 5.00721 5.02079 5.06554 5.13484 5.24774 5.34232 5.36516 5.42297 5.52446 5.57261 6.29097 6.39289 6.66237 6.89269 7.35807 8.13596 8.34581 9.31126 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.018789 B = 0.002883 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.882327 B = 9708.331373 C =10215.277755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 H 0.112 0.888 4 C 0.096 3.904 5 N -0.607 5.607 6 C 0.565 3.435 7 O -0.559 6.559 8 C -0.086 4.086 9 C -0.121 4.121 10 C 0.112 3.888 11 N -0.468 5.468 12 C 0.115 3.885 13 C -0.066 4.066 14 Cl -0.047 7.047 15 C 0.126 3.874 16 C -0.066 4.066 17 C -0.123 4.123 18 C 0.168 3.832 19 N -0.744 5.744 20 C -0.240 4.240 21 H 0.080 0.920 22 C -0.078 4.078 23 N -0.972 5.972 24 Si 0.972 3.028 25 H -0.277 1.277 26 H -0.301 1.301 27 H -0.277 1.277 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.176 0.824 34 H 0.211 0.789 35 H 0.189 0.811 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.026 0.974 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.032 0.968 42 H 0.029 0.971 43 H 0.372 0.628 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.574 4.414 -25.224 27.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 H 0.130 0.870 4 C -0.025 4.025 5 N -0.339 5.339 6 C 0.354 3.646 7 O -0.438 6.438 8 C -0.098 4.098 9 C -0.141 4.141 10 C -0.044 4.044 11 N -0.177 5.177 12 C -0.042 4.042 13 C -0.096 4.096 14 Cl -0.018 7.018 15 C 0.004 3.996 16 C -0.068 4.068 17 C -0.180 4.180 18 C 0.041 3.959 19 N -0.387 5.387 20 C -0.372 4.372 21 H 0.098 0.902 22 C -0.270 4.270 23 N -0.623 5.623 24 Si 0.801 3.199 25 H -0.203 1.203 26 H -0.227 1.227 27 H -0.203 1.203 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.194 0.806 34 H 0.227 0.773 35 H 0.206 0.794 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.047 0.953 43 H 0.205 0.795 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.752 3.804 -25.656 28.077 hybrid contribution 0.981 -0.810 2.593 2.888 sum -9.771 2.994 -23.063 25.226 Atomic orbital electron populations 1.21878 0.93502 1.01344 1.02910 1.22238 0.97022 1.00069 0.91511 0.86975 1.23130 1.02774 0.79255 0.97349 1.48878 1.61544 1.06308 1.17166 1.18080 0.77920 0.82574 0.86046 1.90849 1.53406 1.31859 1.67659 1.20211 0.98413 0.96974 0.94156 1.22828 1.00023 0.97459 0.93837 1.23552 0.91017 0.95682 0.94191 1.67814 1.10544 1.02826 1.36519 1.23102 0.97766 0.97033 0.86294 1.22409 0.99600 0.93369 0.94197 1.98428 1.86375 1.52154 1.64826 1.22255 0.97132 0.97975 0.82274 1.21578 0.95068 0.94547 0.95568 1.21768 0.97207 1.00654 0.98394 1.20901 0.93985 0.92977 0.88006 1.42627 1.55823 1.10916 1.29358 1.19619 1.18859 0.95022 1.03653 0.90229 1.25562 1.03402 0.96516 1.01558 1.69835 1.50302 1.08617 1.33590 0.85229 0.79079 0.76992 0.78569 1.20317 1.22738 1.20266 0.92110 0.90216 0.94024 0.87701 0.87615 0.80641 0.77257 0.79382 0.93493 0.91096 0.95526 0.91365 0.92675 0.95009 0.95289 0.79530 0.94259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.95 71.98 0.57 -1.79 16 2 C -0.09 -1.67 3.30 -9.74 -0.03 -1.71 16 3 H 0.11 1.72 7.71 -2.39 -0.02 1.70 16 4 C 0.10 1.53 4.84 86.67 0.42 1.94 16 5 N -0.61 -15.74 3.31 -810.30 -2.68 -18.42 16 6 C 0.57 16.66 7.39 86.86 0.64 17.30 16 7 O -0.56 -21.84 15.44 -3.77 -0.06 -21.90 16 8 C -0.09 -1.86 5.51 -19.86 -0.11 -1.97 16 9 C -0.12 -1.56 8.03 22.63 0.18 -1.38 16 10 C 0.11 1.14 11.17 84.65 0.95 2.09 16 11 N -0.47 -7.00 10.33 -195.91 -2.02 -9.03 16 12 C 0.12 1.89 10.99 84.73 0.93 2.82 16 13 C -0.07 -1.42 6.36 22.71 0.14 -1.28 16 14 Cl -0.05 -1.21 26.87 -2.72 -0.07 -1.28 16 15 C 0.13 4.17 5.56 86.54 0.48 4.65 16 16 C -0.07 -1.94 0.73 -51.28 -0.04 -1.98 16 17 C -0.12 -3.95 7.08 71.98 0.51 -3.44 16 18 C 0.17 6.06 4.85 86.38 0.42 6.48 16 19 N -0.74 -36.68 5.12 -343.46 -1.76 -38.44 16 20 C -0.24 -13.11 9.99 84.03 0.84 -12.27 16 21 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 22 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 23 N -0.97 -60.67 13.06 21.65 0.28 -60.39 16 24 Si 0.97 46.23 29.55 68.60 2.03 48.26 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 27 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 28 H 0.06 1.10 6.89 -2.39 -0.02 1.08 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.04 0.84 6.72 -2.39 -0.02 0.83 16 31 H 0.10 1.17 7.94 -2.39 -0.02 1.15 16 32 H 0.11 1.17 6.14 -2.39 -0.01 1.16 16 33 H 0.18 1.35 6.34 -2.91 -0.02 1.33 16 34 H 0.21 0.39 8.06 -2.91 -0.02 0.37 16 35 H 0.19 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.05 1.93 7.56 -2.39 -0.02 1.91 16 37 H 0.07 2.47 7.86 -2.38 -0.02 2.45 16 38 H 0.03 1.04 7.01 -2.39 -0.02 1.03 16 39 H 0.07 2.00 6.98 -2.39 -0.02 1.98 16 40 H 0.05 1.67 6.62 -2.39 -0.02 1.65 16 41 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.37 20.17 6.28 -92.71 -0.58 19.59 16 44 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -76.07 364.99 2.54 -73.53 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.45 Total: 22.23 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 6.37 Total: 5.43 kcal Atomic # 7 Polarization: -120.10 SS G_CDS: -6.18 Total: -126.28 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.06 Total: -21.90 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.07 Total: -1.28 kcal Total: -76.07 2.54 -73.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182724240.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.616 kcal (2) G-P(sol) polarization free energy of solvation -76.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds