Wall clock time and date at job start Tue Mar 31 2020 21:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47121 * 2 1 4 4 N 1.46497 * 109.47142 * 239.99803 * 2 1 3 5 5 C 1.34779 * 119.99910 * 84.99591 * 4 2 1 6 6 O 1.21282 * 119.99632 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00363 * 179.97438 * 5 4 2 8 8 C 1.52989 * 109.47310 * 180.02562 * 7 5 4 9 9 F 1.39901 * 109.47527 * 60.00139 * 8 7 5 10 10 F 1.39902 * 109.47255 * 180.02562 * 8 7 5 11 11 F 1.39907 * 109.47297 * 300.00025 * 8 7 5 12 12 C 1.50704 * 109.47005 * 120.00114 * 2 1 3 13 13 O 1.21282 * 120.00096 * 93.11642 * 12 2 1 14 14 N 1.34772 * 120.00078 * 273.11561 * 12 2 1 15 15 C 1.47032 * 125.64721 * 5.17003 * 14 12 2 16 16 C 1.54320 * 107.27237 * 181.02436 * 15 14 12 17 17 C 1.55164 * 102.94047 * 22.19228 * 16 15 14 18 18 H 1.09002 * 111.00007 * 82.61305 * 17 16 15 19 19 N 1.46501 * 111.00123 * 206.42192 * 17 16 15 20 20 C 1.36938 * 120.00227 * 273.54749 * 19 17 16 21 21 H 1.08001 * 119.99654 * 0.02562 * 20 19 17 22 22 C 1.38807 * 119.99987 * 180.02562 * 20 19 17 23 23 N 1.31622 * 120.00023 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00147 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46948 * 90.00405 * 24 22 20 26 26 H 1.48503 * 109.47136 * 210.00308 * 24 22 20 27 27 H 1.48497 * 109.47365 * 330.00382 * 24 22 20 28 28 C 1.47421 * 125.65162 * 184.86549 * 14 12 2 29 29 H 1.08998 * 109.47289 * 294.47177 * 1 2 3 30 30 H 1.08997 * 109.47496 * 54.47314 * 1 2 3 31 31 H 1.09006 * 109.47055 * 174.47399 * 1 2 3 32 32 H 0.96998 * 120.00444 * 264.99575 * 4 2 1 33 33 H 1.09001 * 109.46679 * 300.00840 * 7 5 4 34 34 H 1.08998 * 109.46661 * 60.00297 * 7 5 4 35 35 H 1.09002 * 109.88146 * 300.44366 * 15 14 12 36 36 H 1.08999 * 109.87895 * 61.44984 * 15 14 12 37 37 H 1.09000 * 110.71906 * 140.55999 * 16 15 14 38 38 H 1.09007 * 110.71802 * 263.83284 * 16 15 14 39 39 H 0.96994 * 119.99767 * 93.55087 * 19 17 16 40 40 H 0.97000 * 120.00231 * 179.97438 * 23 22 20 41 41 H 1.08996 * 110.36996 * 274.74391 * 28 14 12 42 42 H 1.09002 * 110.36302 * 37.06949 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 8 1.8589 1.1585 -2.4115 7 6 2.6499 -0.7285 -3.5875 8 6 2.7017 0.2546 -4.7585 9 9 3.5647 1.3098 -4.4438 10 9 3.1680 -0.4049 -5.9009 11 9 1.4192 0.7579 -5.0021 12 6 2.0323 -0.7105 1.2305 13 8 2.2883 -1.8951 1.1847 14 7 2.1971 -0.0294 2.3817 15 6 1.8266 1.3755 2.6068 16 6 2.2231 1.7274 4.0561 17 6 3.3097 0.6699 4.3856 18 1 4.2827 0.9771 4.0022 19 7 3.3732 0.4139 5.8267 20 6 4.1520 1.2045 6.6289 21 1 4.7191 2.0171 6.1993 22 6 4.2126 0.9615 7.9942 23 7 4.9608 1.7218 8.7654 24 14 3.2313 -0.4435 8.7373 25 1 4.0548 -1.6793 8.7326 26 1 2.8583 -0.1026 10.1338 27 1 2.0006 -0.6657 7.9365 28 6 2.7730 -0.5715 3.6259 29 1 -0.3634 0.4257 0.9353 30 1 -0.3634 0.5971 -0.8363 31 1 -0.3633 -1.0229 -0.0990 32 1 2.2491 -1.6318 -1.1526 33 1 3.6492 -1.1203 -3.3979 34 1 1.9777 -1.5508 -3.8325 35 1 2.3647 2.0172 1.9090 36 1 0.7522 1.5015 2.4729 37 1 2.6364 2.7346 4.1091 38 1 1.3690 1.6242 4.7255 39 1 2.8637 -0.3157 6.2125 40 1 5.0029 1.5522 9.7195 41 1 2.0041 -1.0747 4.2121 42 1 3.5883 -1.2584 3.3987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182811982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:55 Heat of formation + Delta-G solvation = -205.253664 kcal Electronic energy + Delta-G solvation = -29353.843235 eV Core-core repulsion = 24533.487721 eV Total energy + Delta-G solvation = -4820.355514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.42712 -47.96967 -47.83867 -40.82844 -39.69857 -37.69985 -35.40157 -34.43130 -32.86538 -31.78863 -30.67018 -29.91445 -28.20238 -25.48720 -24.44701 -23.11469 -22.66493 -21.06861 -20.33420 -19.78546 -19.09964 -18.90346 -18.07316 -17.79354 -17.57422 -16.64003 -16.50013 -16.21112 -15.81595 -15.02901 -14.88201 -14.70537 -14.62730 -14.30300 -14.22471 -14.06215 -14.02128 -13.99469 -13.93579 -13.52567 -13.38014 -12.96749 -12.82135 -12.69197 -12.56117 -12.38388 -12.19288 -11.98350 -11.94491 -11.53435 -10.98331 -10.82301 -10.60110 -10.56736 -10.17904 -10.09545 -9.71602 -9.63314 -9.06312 -8.72658 -7.43858 -5.88532 -3.27048 1.91156 1.98985 2.34365 2.52428 2.94248 3.27744 3.29706 3.32818 3.38851 3.60704 3.67694 4.11269 4.26084 4.48478 4.49947 4.56069 4.69954 4.73186 4.78585 4.99071 5.07872 5.23964 5.29967 5.39352 5.43315 5.51778 5.69580 5.73602 5.77970 5.83516 5.95689 6.14051 6.24627 6.43627 6.68484 6.85954 7.35565 7.55970 7.83826 7.88518 8.29443 9.05617 9.77847 9.95314 11.28976 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.027493 B = 0.002072 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.182522 B =13512.021370 C =13728.538177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.130 3.870 3 H 0.114 0.886 4 N -0.707 5.707 5 C 0.522 3.478 6 O -0.518 6.518 7 C -0.196 4.196 8 C 0.473 3.527 9 F -0.172 7.172 10 F -0.182 7.182 11 F -0.173 7.173 12 C 0.526 3.474 13 O -0.543 6.543 14 N -0.605 5.605 15 C 0.094 3.906 16 C -0.154 4.154 17 C 0.177 3.823 18 H 0.074 0.926 19 N -0.738 5.738 20 C -0.251 4.251 21 H 0.093 0.907 22 C 0.009 3.991 23 N -0.929 5.929 24 Si 0.884 3.116 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.277 1.277 28 C 0.097 3.903 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.413 0.587 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.364 0.636 40 H 0.261 0.739 41 H 0.069 0.931 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.526 -5.585 -26.365 28.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 H 0.131 0.869 4 N -0.361 5.361 5 C 0.306 3.694 6 O -0.393 6.393 7 C -0.237 4.237 8 C 0.418 3.582 9 F -0.153 7.153 10 F -0.164 7.164 11 F -0.154 7.154 12 C 0.312 3.688 13 O -0.421 6.421 14 N -0.338 5.338 15 C -0.029 4.029 16 C -0.195 4.195 17 C 0.066 3.934 18 H 0.091 0.909 19 N -0.380 5.380 20 C -0.380 4.380 21 H 0.110 0.890 22 C -0.187 4.187 23 N -0.575 5.575 24 Si 0.714 3.286 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.203 1.203 28 C -0.026 4.026 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.251 0.749 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.197 0.803 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.421 -5.195 -26.375 28.170 hybrid contribution -0.580 -1.260 0.583 1.505 sum -9.001 -6.455 -25.792 28.069 Atomic orbital electron populations 1.22087 0.92202 1.03509 1.03816 1.20800 0.96188 0.97989 0.82844 0.86861 1.45634 1.67193 1.14969 1.08317 1.19748 0.78355 0.87246 0.84047 1.90847 1.48878 1.15050 1.84527 1.22953 1.08861 0.99801 0.92060 1.19663 0.74366 0.81011 0.83116 1.93242 1.70137 1.59298 1.92633 1.93210 1.88854 1.80728 1.53572 1.93231 1.38813 1.88491 1.94910 1.20064 0.78190 0.86894 0.83605 1.90697 1.52021 1.14920 1.84448 1.48373 1.60754 1.13352 1.11355 1.22278 0.99932 0.81240 0.99429 1.23393 1.01482 1.02042 0.92559 1.21317 0.96408 0.90720 0.84993 0.90859 1.42599 1.55995 1.37753 1.01696 1.19010 1.20110 1.09911 0.89017 0.88970 1.24682 0.99352 0.98658 0.96035 1.69695 1.42593 1.40418 1.04824 0.86568 0.80178 0.83002 0.78841 1.20910 1.21601 1.20279 1.22645 0.98125 0.97890 0.83967 0.90647 0.90532 0.91418 0.74939 0.84024 0.84082 0.91217 0.91430 0.89963 0.90442 0.80298 0.92855 0.91272 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.47 37.16 0.35 -0.96 16 2 C 0.13 1.27 2.47 -69.08 -0.17 1.10 16 3 H 0.11 1.15 6.64 -51.93 -0.34 0.80 16 4 N -0.71 -5.87 5.06 -54.93 -0.28 -6.14 16 5 C 0.52 4.52 7.56 -10.98 -0.08 4.44 16 6 O -0.52 -6.42 14.50 5.56 0.08 -6.34 16 7 C -0.20 -0.99 5.75 -27.89 -0.16 -1.15 16 8 C 0.47 3.81 2.89 37.15 0.11 3.92 16 9 F -0.17 -1.79 16.40 2.25 0.04 -1.75 16 10 F -0.18 -1.38 17.32 2.25 0.04 -1.34 16 11 F -0.17 -1.72 16.40 2.25 0.04 -1.68 16 12 C 0.53 6.57 7.04 -10.99 -0.08 6.50 16 13 O -0.54 -8.16 16.33 5.56 0.09 -8.07 16 14 N -0.61 -7.81 3.32 -170.38 -0.57 -8.38 16 15 C 0.09 1.06 6.30 -3.06 -0.02 1.04 16 16 C -0.15 -2.21 6.64 -24.89 -0.17 -2.37 16 17 C 0.18 3.04 3.70 -65.66 -0.24 2.79 16 18 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 19 N -0.74 -16.05 5.08 -51.23 -0.26 -16.31 16 20 C -0.25 -6.64 10.47 -15.06 -0.16 -6.79 16 21 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 22 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 23 N -0.93 -28.07 13.97 55.49 0.78 -27.30 16 24 Si 0.88 21.11 27.73 -169.99 -4.71 16.40 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 28 C 0.10 1.46 6.51 -2.41 -0.02 1.44 16 29 H 0.07 0.59 7.32 -51.93 -0.38 0.21 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.41 2.91 7.80 -40.82 -0.32 2.59 16 33 H 0.14 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.14 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.70 7.67 -51.93 -0.40 0.30 16 36 H 0.07 0.63 7.32 -51.93 -0.38 0.25 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.36 7.81 5.57 -40.82 -0.23 7.58 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.07 1.05 8.00 -51.93 -0.42 0.64 16 42 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -33.55 362.92 -5.45 -39.00 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.43 Total: 6.34 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -0.73 Total: 10.11 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.33 Total: -58.14 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.17 Total: -14.41 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.11 Total: -4.77 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.71 Total: 16.40 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.55 -5.45 -39.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182811982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.253 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds