Wall clock time and date at job start Tue Mar 31 2020 21:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47121 * 2 1 4 4 N 1.46497 * 109.47142 * 239.99803 * 2 1 3 5 5 C 1.34779 * 119.99910 * 84.99591 * 4 2 1 6 6 O 1.21282 * 119.99632 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00363 * 179.97438 * 5 4 2 8 8 C 1.52989 * 109.47310 * 180.02562 * 7 5 4 9 9 F 1.39901 * 109.47527 * 60.00139 * 8 7 5 10 10 F 1.39902 * 109.47255 * 180.02562 * 8 7 5 11 11 F 1.39907 * 109.47297 * 300.00025 * 8 7 5 12 12 C 1.50704 * 109.47005 * 120.00114 * 2 1 3 13 13 O 1.21282 * 120.00096 * 93.11642 * 12 2 1 14 14 N 1.34772 * 120.00078 * 273.11561 * 12 2 1 15 15 C 1.47032 * 125.64721 * 5.17003 * 14 12 2 16 16 C 1.54320 * 107.27237 * 181.02436 * 15 14 12 17 17 C 1.55164 * 102.94047 * 22.19228 * 16 15 14 18 18 H 1.09002 * 111.00007 * 82.61305 * 17 16 15 19 19 N 1.46501 * 111.00123 * 206.42192 * 17 16 15 20 20 C 1.36938 * 120.00227 * 273.54749 * 19 17 16 21 21 H 1.08001 * 119.99654 * 0.02562 * 20 19 17 22 22 C 1.38807 * 119.99987 * 180.02562 * 20 19 17 23 23 N 1.31622 * 120.00023 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00147 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46948 * 90.00405 * 24 22 20 26 26 H 1.48503 * 109.47136 * 210.00308 * 24 22 20 27 27 H 1.48497 * 109.47365 * 330.00382 * 24 22 20 28 28 C 1.47421 * 125.65162 * 184.86549 * 14 12 2 29 29 H 1.08998 * 109.47289 * 294.47177 * 1 2 3 30 30 H 1.08997 * 109.47496 * 54.47314 * 1 2 3 31 31 H 1.09006 * 109.47055 * 174.47399 * 1 2 3 32 32 H 0.96998 * 120.00444 * 264.99575 * 4 2 1 33 33 H 1.09001 * 109.46679 * 300.00840 * 7 5 4 34 34 H 1.08998 * 109.46661 * 60.00297 * 7 5 4 35 35 H 1.09002 * 109.88146 * 300.44366 * 15 14 12 36 36 H 1.08999 * 109.87895 * 61.44984 * 15 14 12 37 37 H 1.09000 * 110.71906 * 140.55999 * 16 15 14 38 38 H 1.09007 * 110.71802 * 263.83284 * 16 15 14 39 39 H 0.96994 * 119.99767 * 93.55087 * 19 17 16 40 40 H 0.97000 * 120.00231 * 179.97438 * 23 22 20 41 41 H 1.08996 * 110.36996 * 274.74391 * 28 14 12 42 42 H 1.09002 * 110.36302 * 37.06949 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 8 1.8589 1.1585 -2.4115 7 6 2.6499 -0.7285 -3.5875 8 6 2.7017 0.2546 -4.7585 9 9 3.5647 1.3098 -4.4438 10 9 3.1680 -0.4049 -5.9009 11 9 1.4192 0.7579 -5.0021 12 6 2.0323 -0.7105 1.2305 13 8 2.2883 -1.8951 1.1847 14 7 2.1971 -0.0294 2.3817 15 6 1.8266 1.3755 2.6068 16 6 2.2231 1.7274 4.0561 17 6 3.3097 0.6699 4.3856 18 1 4.2827 0.9771 4.0022 19 7 3.3732 0.4139 5.8267 20 6 4.1520 1.2045 6.6289 21 1 4.7191 2.0171 6.1993 22 6 4.2126 0.9615 7.9942 23 7 4.9608 1.7218 8.7654 24 14 3.2313 -0.4435 8.7373 25 1 4.0548 -1.6793 8.7326 26 1 2.8583 -0.1026 10.1338 27 1 2.0006 -0.6657 7.9365 28 6 2.7730 -0.5715 3.6259 29 1 -0.3634 0.4257 0.9353 30 1 -0.3634 0.5971 -0.8363 31 1 -0.3633 -1.0229 -0.0990 32 1 2.2491 -1.6318 -1.1526 33 1 3.6492 -1.1203 -3.3979 34 1 1.9777 -1.5508 -3.8325 35 1 2.3647 2.0172 1.9090 36 1 0.7522 1.5015 2.4729 37 1 2.6364 2.7346 4.1091 38 1 1.3690 1.6242 4.7255 39 1 2.8637 -0.3157 6.2125 40 1 5.0029 1.5522 9.7195 41 1 2.0041 -1.0747 4.2121 42 1 3.5883 -1.2584 3.3987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182811982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:54 Heat of formation + Delta-G solvation = -229.994477 kcal Electronic energy + Delta-G solvation = -29354.916077 eV Core-core repulsion = 24533.487721 eV Total energy + Delta-G solvation = -4821.428356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.06743 -48.59282 -48.53530 -41.70512 -40.58451 -38.88093 -36.20098 -36.07933 -33.73746 -33.28307 -31.66354 -31.01758 -29.49535 -26.38583 -25.46963 -24.59549 -23.65807 -21.85203 -21.66543 -20.66370 -19.81343 -19.73134 -19.54193 -18.80219 -18.32314 -17.64323 -17.40455 -17.14786 -16.60287 -16.31647 -15.83822 -15.68232 -15.48292 -15.36969 -15.30781 -14.95296 -14.82922 -14.71533 -14.71042 -14.65975 -14.52472 -14.08614 -13.93550 -13.53224 -13.51190 -13.33247 -13.27535 -13.14401 -12.96510 -12.74318 -12.68706 -12.27223 -12.13488 -11.81691 -11.64123 -11.32297 -11.06853 -10.99174 -10.39287 -9.78409 -9.35621 -8.02506 -5.38007 1.17916 1.36276 1.39719 1.42765 1.47710 1.49799 1.76935 2.14302 2.48573 2.72650 3.06983 3.08811 3.18372 3.30354 3.48517 3.67950 3.75057 3.94163 3.97819 4.00809 4.16077 4.20740 4.26767 4.28157 4.40516 4.57182 4.64971 4.73445 4.78963 4.94805 5.04694 5.13796 5.16183 5.23010 5.37775 5.76254 6.20350 6.23618 6.35603 6.86144 6.94234 7.05599 7.79327 7.97897 9.18294 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.027493 B = 0.002072 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.182522 B =13512.021370 C =13728.538177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 H 0.112 0.888 4 N -0.701 5.701 5 C 0.521 3.479 6 O -0.559 6.559 7 C -0.184 4.184 8 C 0.466 3.534 9 F -0.190 7.190 10 F -0.179 7.179 11 F -0.187 7.187 12 C 0.528 3.472 13 O -0.568 6.568 14 N -0.607 5.607 15 C 0.101 3.899 16 C -0.146 4.146 17 C 0.166 3.834 18 H 0.061 0.939 19 N -0.743 5.743 20 C -0.229 4.229 21 H 0.061 0.939 22 C -0.061 4.061 23 N -0.981 5.981 24 Si 0.952 3.048 25 H -0.281 1.281 26 H -0.298 1.298 27 H -0.248 1.248 28 C 0.107 3.893 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.421 0.579 33 H 0.172 0.828 34 H 0.178 0.822 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.368 0.632 40 H 0.258 0.742 41 H 0.072 0.928 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.294 -7.226 -28.125 30.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.027 3.973 3 H 0.130 0.870 4 N -0.356 5.356 5 C 0.307 3.693 6 O -0.437 6.437 7 C -0.224 4.224 8 C 0.412 3.588 9 F -0.172 7.172 10 F -0.161 7.161 11 F -0.169 7.169 12 C 0.316 3.684 13 O -0.448 6.448 14 N -0.339 5.339 15 C -0.021 4.021 16 C -0.187 4.187 17 C 0.057 3.943 18 H 0.079 0.921 19 N -0.386 5.386 20 C -0.360 4.360 21 H 0.079 0.921 22 C -0.253 4.253 23 N -0.631 5.631 24 Si 0.780 3.220 25 H -0.207 1.207 26 H -0.225 1.225 27 H -0.173 1.173 28 C -0.016 4.016 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.260 0.740 33 H 0.190 0.810 34 H 0.196 0.804 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.201 0.799 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.219 -6.861 -28.212 30.780 hybrid contribution 0.031 -0.702 1.004 1.226 sum -10.189 -7.562 -27.207 30.020 Atomic orbital electron populations 1.22058 0.90841 1.03811 1.04314 1.20745 0.97093 0.97495 0.81997 0.86999 1.45611 1.66865 1.15263 1.07856 1.20273 0.77418 0.86820 0.84780 1.90836 1.50729 1.16934 1.85192 1.23028 1.11380 0.99181 0.88799 1.20121 0.73461 0.81080 0.84173 1.93205 1.70676 1.60477 1.92794 1.93213 1.88754 1.80458 1.53662 1.93201 1.39762 1.88836 1.95099 1.20508 0.77382 0.86596 0.83890 1.90688 1.53099 1.16169 1.84837 1.48389 1.60751 1.13918 1.10890 1.22320 1.01968 0.80439 0.97348 1.23206 0.99985 1.00723 0.94750 1.21472 0.97067 0.93056 0.82715 0.92076 1.42537 1.55476 1.37294 1.03246 1.18952 1.18873 1.08770 0.89414 0.92077 1.25480 1.01277 1.01837 0.96718 1.69875 1.45309 1.43050 1.04914 0.85457 0.79644 0.79363 0.77571 1.20729 1.22499 1.17275 1.22343 0.98007 0.96481 0.84805 0.89811 0.90452 0.91127 0.74013 0.81038 0.80437 0.89505 0.88523 0.90319 0.90779 0.79866 0.93330 0.90998 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.47 71.98 0.68 -1.42 16 2 C 0.13 2.29 2.47 44.25 0.11 2.40 16 3 H 0.11 1.99 6.64 -2.39 -0.02 1.97 16 4 N -0.70 -9.82 5.06 -446.09 -2.26 -12.07 16 5 C 0.52 7.83 7.56 87.66 0.66 8.49 16 6 O -0.56 -13.08 14.50 -3.04 -0.04 -13.13 16 7 C -0.18 -1.30 5.75 29.85 0.17 -1.13 16 8 C 0.47 6.74 2.89 71.98 0.21 6.95 16 9 F -0.19 -3.81 16.40 44.97 0.74 -3.07 16 10 F -0.18 -2.38 17.32 44.97 0.78 -1.61 16 11 F -0.19 -3.53 16.40 44.97 0.74 -2.79 16 12 C 0.53 11.92 7.04 87.66 0.62 12.54 16 13 O -0.57 -15.88 16.33 -3.03 -0.05 -15.93 16 14 N -0.61 -14.21 3.32 -811.35 -2.70 -16.91 16 15 C 0.10 1.98 6.30 86.73 0.55 2.53 16 16 C -0.15 -3.95 6.64 31.78 0.21 -3.74 16 17 C 0.17 5.57 3.70 46.46 0.17 5.75 16 18 H 0.06 2.20 8.13 -2.39 -0.02 2.18 16 19 N -0.74 -31.78 5.08 -316.00 -1.61 -33.39 16 20 C -0.23 -12.30 10.47 84.03 0.88 -11.42 16 21 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 22 C -0.06 -3.47 5.50 84.86 0.47 -3.01 16 23 N -0.98 -61.11 13.97 21.65 0.30 -60.81 16 24 Si 0.95 43.61 27.73 68.60 1.90 45.51 16 25 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 26 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 27 H -0.25 -10.07 6.52 99.48 0.65 -9.42 16 28 C 0.11 3.07 6.51 86.93 0.57 3.63 16 29 H 0.08 1.01 7.32 -2.39 -0.02 1.00 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.42 4.71 7.80 -92.71 -0.72 3.99 16 33 H 0.17 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.18 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.09 1.47 7.67 -2.39 -0.02 1.45 16 36 H 0.10 1.42 7.32 -2.39 -0.02 1.40 16 37 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 38 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.37 15.14 5.57 -92.71 -0.52 14.62 16 40 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.07 2.04 8.00 -2.39 -0.02 2.02 16 42 H 0.07 2.17 8.09 -2.39 -0.02 2.15 16 Total: -1.00 -74.90 362.92 2.88 -72.02 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -0.22 Total: 20.61 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 5.29 Total: 21.58 kcal Atomic # 7 Polarization: -116.92 SS G_CDS: -6.26 Total: -123.18 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.09 Total: -29.06 kcal Atomic # 9 Polarization: -9.72 SS G_CDS: 2.25 Total: -7.47 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.90 Total: 45.51 kcal Total: -74.90 2.88 -72.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182811982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.977 kcal (2) G-P(sol) polarization free energy of solvation -74.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds