Wall clock time and date at job start Tue Mar 31 2020 21:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46909 * 2 1 4 4 N 1.46500 * 109.47113 * 119.99482 * 2 1 3 5 5 C 1.34784 * 120.00361 * 275.00379 * 4 2 1 6 6 O 1.21288 * 119.99605 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00234 * 180.02562 * 5 4 2 8 8 C 1.52994 * 109.47065 * 179.97438 * 7 5 4 9 9 F 1.39900 * 109.47255 * 59.99679 * 8 7 5 10 10 F 1.39902 * 109.47239 * 179.97438 * 8 7 5 11 11 F 1.39894 * 109.47099 * 299.99654 * 8 7 5 12 12 C 1.50696 * 109.47108 * 239.99501 * 2 1 3 13 13 O 1.21279 * 119.99869 * 266.30027 * 12 2 1 14 14 N 1.34774 * 119.99687 * 86.30763 * 12 2 1 15 15 C 1.47027 * 125.64522 * 185.09264 * 14 12 2 16 16 C 1.54331 * 107.27060 * 181.02014 * 15 14 12 17 17 C 1.55161 * 102.93826 * 22.19042 * 16 15 14 18 18 H 1.09000 * 110.99900 * 82.61901 * 17 16 15 19 19 N 1.46502 * 110.99962 * 206.42379 * 17 16 15 20 20 C 1.36939 * 120.00057 * 273.54780 * 19 17 16 21 21 H 1.08003 * 120.00263 * 0.02562 * 20 19 17 22 22 C 1.38813 * 120.00226 * 179.97438 * 20 19 17 23 23 N 1.31623 * 119.99617 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00192 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47111 * 90.00202 * 24 22 20 26 26 H 1.48503 * 109.47307 * 210.00313 * 24 22 20 27 27 H 1.48499 * 109.47104 * 330.00361 * 24 22 20 28 28 C 1.47419 * 125.65129 * 4.77962 * 14 12 2 29 29 H 1.09004 * 109.47247 * 301.10542 * 1 2 3 30 30 H 1.08999 * 109.47572 * 61.10542 * 1 2 3 31 31 H 1.09005 * 109.47208 * 181.10793 * 1 2 3 32 32 H 0.97000 * 120.00165 * 95.00199 * 4 2 1 33 33 H 1.08993 * 109.47468 * 59.99366 * 7 5 4 34 34 H 1.09000 * 109.46601 * 299.99482 * 7 5 4 35 35 H 1.08996 * 109.88154 * 300.43467 * 15 14 12 36 36 H 1.08998 * 109.88227 * 61.45027 * 15 14 12 37 37 H 1.08991 * 110.71902 * 140.55686 * 16 15 14 38 38 H 1.08998 * 110.71793 * 263.83426 * 16 15 14 39 39 H 0.96993 * 120.00272 * 93.55297 * 19 17 16 40 40 H 0.97002 * 119.99605 * 179.97438 * 23 22 20 41 41 H 1.08996 * 110.36744 * 274.75108 * 28 14 12 42 42 H 1.09003 * 110.36905 * 37.07547 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3573 6 8 1.8589 1.1588 2.4115 7 6 2.6498 -0.7283 3.5876 8 6 2.7017 0.2550 4.7586 9 9 1.4193 0.7584 5.0020 10 9 3.1680 -0.4044 5.9010 11 9 3.5647 1.3100 4.4437 12 6 2.0323 -0.7105 -1.2304 13 8 2.2983 -1.8927 -1.1817 14 7 2.1860 -0.0320 -2.3847 15 6 2.5636 -0.6180 -3.6792 16 6 2.6421 0.5372 -4.6996 17 6 2.8570 1.7823 -3.7990 18 1 3.9077 1.8940 -3.5313 19 7 2.3520 2.9941 -4.4492 20 6 3.1556 3.6964 -5.3072 21 1 4.1616 3.3568 -5.5049 22 6 2.6769 4.8443 -5.9238 23 7 1.4508 5.2579 -5.6832 24 14 3.7734 5.8027 -7.0936 25 1 3.5950 5.2861 -8.4744 26 1 3.4047 7.2406 -7.0516 27 1 5.1921 5.6433 -6.6849 28 6 1.9971 1.4195 -2.5599 29 1 -0.3634 0.5309 0.8799 30 1 -0.3634 0.4965 -0.8997 31 1 -0.3634 -1.0275 0.0199 32 1 2.2490 -1.6317 1.1528 33 1 3.6491 -1.1201 3.3981 34 1 1.9776 -1.5505 3.8327 35 1 3.5348 -1.1057 -3.5961 36 1 1.8110 -1.3416 -3.9922 37 1 3.4867 0.3989 -5.3745 38 1 1.7102 0.6219 -5.2586 39 1 1.4484 3.2990 -4.2720 40 1 1.1164 6.0603 -6.1138 41 1 0.9470 1.6458 -2.7446 42 1 2.3530 1.9572 -1.6811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182811986.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:02 Heat of formation + Delta-G solvation = -209.489603 kcal Electronic energy + Delta-G solvation = -29490.668419 eV Core-core repulsion = 24670.129221 eV Total energy + Delta-G solvation = -4820.539198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.35411 -47.89945 -47.76073 -40.73231 -39.59936 -37.58701 -35.30860 -34.21130 -32.80756 -31.67906 -30.69250 -29.50804 -27.78147 -25.39223 -24.33323 -23.66638 -22.38915 -20.98189 -20.21517 -19.64908 -19.02878 -18.82644 -18.00126 -17.53126 -17.40761 -16.56531 -16.25577 -16.10106 -15.78590 -15.03481 -14.76173 -14.68914 -14.55169 -14.23748 -14.15582 -13.94462 -13.92451 -13.89100 -13.69752 -13.35560 -13.28237 -13.00758 -12.82371 -12.64990 -12.46391 -12.29968 -12.07233 -11.88066 -11.62162 -11.21545 -10.91116 -10.79784 -10.49641 -10.40932 -10.18426 -10.00176 -9.81414 -9.53994 -9.03391 -8.64284 -7.13505 -5.89560 -3.20673 2.01310 2.08128 2.42107 2.59713 3.04038 3.35044 3.37001 3.42924 3.44314 3.67984 3.75990 4.19981 4.33470 4.50745 4.57186 4.62138 4.82647 4.85242 4.99345 5.09032 5.29500 5.35926 5.47249 5.50117 5.56042 5.62034 5.76358 5.89161 5.92557 6.00673 6.09074 6.25112 6.34556 6.51512 6.79650 6.95594 7.43771 7.59282 7.66171 7.95707 8.27585 9.39692 9.91601 10.26431 11.32475 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.015072 B = 0.002392 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.349933 B =11704.608789 C =12792.943366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.128 3.872 3 H 0.115 0.885 4 N -0.707 5.707 5 C 0.520 3.480 6 O -0.515 6.515 7 C -0.195 4.195 8 C 0.473 3.527 9 F -0.173 7.173 10 F -0.183 7.183 11 F -0.171 7.171 12 C 0.527 3.473 13 O -0.549 6.549 14 N -0.603 5.603 15 C 0.110 3.890 16 C -0.156 4.156 17 C 0.174 3.826 18 H 0.065 0.935 19 N -0.714 5.714 20 C -0.247 4.247 21 H 0.073 0.927 22 C -0.008 4.008 23 N -0.929 5.929 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.084 3.916 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.412 0.588 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.077 0.923 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.220 -15.786 17.902 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.020 3.980 3 H 0.133 0.867 4 N -0.361 5.361 5 C 0.304 3.696 6 O -0.390 6.390 7 C -0.236 4.236 8 C 0.418 3.582 9 F -0.154 7.154 10 F -0.164 7.164 11 F -0.153 7.153 12 C 0.314 3.686 13 O -0.428 6.428 14 N -0.336 5.336 15 C -0.013 4.013 16 C -0.197 4.197 17 C 0.062 3.938 18 H 0.083 0.917 19 N -0.355 5.355 20 C -0.377 4.377 21 H 0.090 0.910 22 C -0.205 4.205 23 N -0.577 5.577 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C -0.039 4.039 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.249 0.751 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.221 0.779 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.277 -15.447 17.932 23.670 hybrid contribution 0.361 0.265 -0.569 0.724 sum 0.638 -15.183 17.363 23.074 Atomic orbital electron populations 1.22060 0.92016 1.03260 1.04118 1.20849 0.96306 0.98137 0.82724 0.86725 1.45631 1.67266 1.14877 1.08374 1.19752 0.78502 0.87292 0.84057 1.90870 1.48658 1.14998 1.84459 1.22946 1.08763 0.99781 0.92121 1.19668 0.74403 0.81041 0.83083 1.93233 1.38782 1.88480 1.94899 1.93205 1.88870 1.80748 1.53618 1.93244 1.70117 1.59288 1.92619 1.20048 0.78006 0.86855 0.83717 1.90670 1.52011 1.15588 1.84490 1.48408 1.66731 1.09836 1.08640 1.22035 1.00056 0.96915 0.82279 1.23456 1.03197 0.95343 0.97693 1.21319 0.96212 0.87222 0.89095 0.91684 1.42244 1.15757 1.25282 1.52221 1.19189 0.95886 1.04537 1.18137 0.90952 1.24770 0.96631 0.98440 1.00649 1.69655 1.15534 1.25630 1.46856 0.86168 0.79669 0.79334 0.80850 1.21601 1.21670 1.20650 1.22851 1.01550 0.78788 1.00705 0.90522 0.90413 0.91600 0.75080 0.84111 0.84133 0.91697 0.91879 0.90540 0.90428 0.77906 0.93282 0.90503 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.47 37.16 0.35 -1.21 16 2 C 0.13 1.43 2.54 -69.09 -0.18 1.26 16 3 H 0.12 1.40 6.07 -51.93 -0.32 1.09 16 4 N -0.71 -6.58 5.05 -54.93 -0.28 -6.86 16 5 C 0.52 5.10 7.56 -10.98 -0.08 5.01 16 6 O -0.52 -7.18 14.50 5.55 0.08 -7.10 16 7 C -0.20 -1.15 5.75 -27.89 -0.16 -1.31 16 8 C 0.47 4.23 2.89 37.15 0.11 4.34 16 9 F -0.17 -1.89 16.40 2.25 0.04 -1.85 16 10 F -0.18 -1.51 17.32 2.25 0.04 -1.47 16 11 F -0.17 -1.96 16.40 2.25 0.04 -1.93 16 12 C 0.53 6.99 7.04 -10.99 -0.08 6.91 16 13 O -0.55 -8.32 16.36 5.56 0.09 -8.22 16 14 N -0.60 -8.29 3.32 -170.38 -0.57 -8.86 16 15 C 0.11 1.50 6.87 -3.06 -0.02 1.48 16 16 C -0.16 -2.42 6.64 -24.89 -0.17 -2.58 16 17 C 0.17 3.06 3.70 -65.66 -0.24 2.82 16 18 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 19 N -0.71 -16.27 5.28 -51.23 -0.27 -16.54 16 20 C -0.25 -6.39 9.98 -15.06 -0.15 -6.54 16 21 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 23 N -0.93 -26.69 13.06 55.49 0.72 -25.97 16 24 Si 0.91 21.45 29.55 -169.99 -5.02 16.43 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 C 0.08 1.23 6.24 -2.41 -0.02 1.21 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.41 3.17 7.80 -40.82 -0.32 2.86 16 33 H 0.14 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.14 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.39 9.33 7.71 -40.82 -0.31 9.02 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.08 1.10 8.00 -51.93 -0.42 0.69 16 42 H 0.08 1.08 6.89 -51.93 -0.36 0.73 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -32.21 366.78 -5.82 -38.03 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.49 Total: 7.73 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: -0.73 Total: 11.08 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -0.39 Total: -58.22 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.17 Total: -15.33 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.11 Total: -5.25 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.21 -5.82 -38.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182811986.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.458 kcal (2) G-P(sol) polarization free energy of solvation -32.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds