Wall clock time and date at job start Tue Mar 31 2020 21:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46909 * 2 1 4 4 N 1.46500 * 109.47113 * 119.99482 * 2 1 3 5 5 C 1.34784 * 120.00361 * 275.00379 * 4 2 1 6 6 O 1.21288 * 119.99605 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00234 * 180.02562 * 5 4 2 8 8 C 1.52994 * 109.47065 * 179.97438 * 7 5 4 9 9 F 1.39900 * 109.47255 * 59.99679 * 8 7 5 10 10 F 1.39902 * 109.47239 * 179.97438 * 8 7 5 11 11 F 1.39894 * 109.47099 * 299.99654 * 8 7 5 12 12 C 1.50696 * 109.47108 * 239.99501 * 2 1 3 13 13 O 1.21279 * 119.99869 * 266.30027 * 12 2 1 14 14 N 1.34774 * 119.99687 * 86.30763 * 12 2 1 15 15 C 1.47027 * 125.64522 * 185.09264 * 14 12 2 16 16 C 1.54331 * 107.27060 * 181.02014 * 15 14 12 17 17 C 1.55161 * 102.93826 * 22.19042 * 16 15 14 18 18 H 1.09000 * 110.99900 * 82.61901 * 17 16 15 19 19 N 1.46502 * 110.99962 * 206.42379 * 17 16 15 20 20 C 1.36939 * 120.00057 * 273.54780 * 19 17 16 21 21 H 1.08003 * 120.00263 * 0.02562 * 20 19 17 22 22 C 1.38813 * 120.00226 * 179.97438 * 20 19 17 23 23 N 1.31623 * 119.99617 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00192 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47111 * 90.00202 * 24 22 20 26 26 H 1.48503 * 109.47307 * 210.00313 * 24 22 20 27 27 H 1.48499 * 109.47104 * 330.00361 * 24 22 20 28 28 C 1.47419 * 125.65129 * 4.77962 * 14 12 2 29 29 H 1.09004 * 109.47247 * 301.10542 * 1 2 3 30 30 H 1.08999 * 109.47572 * 61.10542 * 1 2 3 31 31 H 1.09005 * 109.47208 * 181.10793 * 1 2 3 32 32 H 0.97000 * 120.00165 * 95.00199 * 4 2 1 33 33 H 1.08993 * 109.47468 * 59.99366 * 7 5 4 34 34 H 1.09000 * 109.46601 * 299.99482 * 7 5 4 35 35 H 1.08996 * 109.88154 * 300.43467 * 15 14 12 36 36 H 1.08998 * 109.88227 * 61.45027 * 15 14 12 37 37 H 1.08991 * 110.71902 * 140.55686 * 16 15 14 38 38 H 1.08998 * 110.71793 * 263.83426 * 16 15 14 39 39 H 0.96993 * 120.00272 * 93.55297 * 19 17 16 40 40 H 0.97002 * 119.99605 * 179.97438 * 23 22 20 41 41 H 1.08996 * 110.36744 * 274.75108 * 28 14 12 42 42 H 1.09003 * 110.36905 * 37.07547 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3573 6 8 1.8589 1.1588 2.4115 7 6 2.6498 -0.7283 3.5876 8 6 2.7017 0.2550 4.7586 9 9 1.4193 0.7584 5.0020 10 9 3.1680 -0.4044 5.9010 11 9 3.5647 1.3100 4.4437 12 6 2.0323 -0.7105 -1.2304 13 8 2.2983 -1.8927 -1.1817 14 7 2.1860 -0.0320 -2.3847 15 6 2.5636 -0.6180 -3.6792 16 6 2.6421 0.5372 -4.6996 17 6 2.8570 1.7823 -3.7990 18 1 3.9077 1.8940 -3.5313 19 7 2.3520 2.9941 -4.4492 20 6 3.1556 3.6964 -5.3072 21 1 4.1616 3.3568 -5.5049 22 6 2.6769 4.8443 -5.9238 23 7 1.4508 5.2579 -5.6832 24 14 3.7734 5.8027 -7.0936 25 1 3.5950 5.2861 -8.4744 26 1 3.4047 7.2406 -7.0516 27 1 5.1921 5.6433 -6.6849 28 6 1.9971 1.4195 -2.5599 29 1 -0.3634 0.5309 0.8799 30 1 -0.3634 0.4965 -0.8997 31 1 -0.3634 -1.0275 0.0199 32 1 2.2490 -1.6317 1.1528 33 1 3.6491 -1.1201 3.3981 34 1 1.9776 -1.5505 3.8327 35 1 3.5348 -1.1057 -3.5961 36 1 1.8110 -1.3416 -3.9922 37 1 3.4867 0.3989 -5.3745 38 1 1.7102 0.6219 -5.2586 39 1 1.4484 3.2990 -4.2720 40 1 1.1164 6.0603 -6.1138 41 1 0.9470 1.6458 -2.7446 42 1 2.3530 1.9572 -1.6811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182811986.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:00 Heat of formation + Delta-G solvation = -232.255457 kcal Electronic energy + Delta-G solvation = -29491.655621 eV Core-core repulsion = 24670.129221 eV Total energy + Delta-G solvation = -4821.526400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -51.07088 -48.59409 -48.54134 -41.70601 -40.57679 -38.83228 -36.22205 -35.90477 -33.62839 -33.15735 -31.78737 -30.63966 -29.25200 -26.30535 -25.64611 -25.02918 -23.46929 -21.88313 -21.51177 -20.64359 -19.83312 -19.54375 -19.31667 -18.76571 -18.35390 -17.58729 -17.37756 -17.13410 -16.62305 -16.33483 -15.99848 -15.54194 -15.43146 -15.31662 -15.26675 -14.95281 -14.80971 -14.71524 -14.68619 -14.65808 -14.37467 -14.15136 -13.97358 -13.51228 -13.34209 -13.28693 -13.08760 -13.03237 -12.96024 -12.72716 -12.67354 -12.28217 -12.12569 -11.77952 -11.64045 -11.32975 -11.06888 -10.93479 -10.39851 -9.79146 -9.03623 -7.94543 -5.23756 1.20031 1.35968 1.44929 1.50693 1.51166 1.59266 1.77824 2.13392 2.57179 2.72272 3.06710 3.08851 3.15277 3.37647 3.67189 3.74595 3.83632 3.89666 3.98444 4.07147 4.16335 4.26078 4.27007 4.29504 4.50295 4.56477 4.66756 4.70757 4.80019 4.97244 5.06085 5.09373 5.15029 5.24669 5.40481 5.55011 6.24128 6.26416 6.32462 6.85537 6.95525 7.34745 8.05792 8.29441 9.28370 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.015072 B = 0.002392 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.349933 B =11704.608789 C =12792.943366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.130 3.870 3 H 0.104 0.896 4 N -0.699 5.699 5 C 0.518 3.482 6 O -0.562 6.562 7 C -0.181 4.181 8 C 0.465 3.535 9 F -0.188 7.188 10 F -0.178 7.178 11 F -0.191 7.191 12 C 0.531 3.469 13 O -0.563 6.563 14 N -0.604 5.604 15 C 0.116 3.884 16 C -0.144 4.144 17 C 0.164 3.836 18 H 0.062 0.938 19 N -0.726 5.726 20 C -0.239 4.239 21 H 0.078 0.922 22 C -0.070 4.070 23 N -0.966 5.966 24 Si 0.969 3.031 25 H -0.288 1.288 26 H -0.299 1.299 27 H -0.270 1.270 28 C 0.098 3.902 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.423 0.577 33 H 0.175 0.825 34 H 0.180 0.820 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.377 0.623 40 H 0.251 0.749 41 H 0.079 0.921 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.026 -17.894 18.572 25.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.022 3.978 3 H 0.121 0.879 4 N -0.353 5.353 5 C 0.304 3.696 6 O -0.440 6.440 7 C -0.221 4.221 8 C 0.411 3.589 9 F -0.170 7.170 10 F -0.160 7.160 11 F -0.172 7.172 12 C 0.319 3.681 13 O -0.443 6.443 14 N -0.337 5.337 15 C -0.006 4.006 16 C -0.185 4.185 17 C 0.054 3.946 18 H 0.079 0.921 19 N -0.366 5.366 20 C -0.371 4.371 21 H 0.096 0.904 22 C -0.263 4.263 23 N -0.616 5.616 24 Si 0.798 3.202 25 H -0.215 1.215 26 H -0.226 1.226 27 H -0.195 1.195 28 C -0.025 4.025 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.262 0.738 33 H 0.192 0.808 34 H 0.197 0.803 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.098 0.902 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.123 -17.637 18.622 25.673 hybrid contribution 0.145 0.825 -0.709 1.097 sum 1.267 -16.812 17.912 24.599 Atomic orbital electron populations 1.22016 0.91024 1.03817 1.04006 1.20749 0.97001 0.97445 0.82614 0.87864 1.45562 1.66836 1.15233 1.07699 1.20370 0.77458 0.86824 0.84918 1.90859 1.50733 1.17187 1.85211 1.23023 1.11487 0.99083 0.88532 1.20148 0.73436 0.81111 0.84241 1.93200 1.39840 1.88856 1.95102 1.93212 1.88735 1.80416 1.53602 1.93204 1.70683 1.60549 1.92799 1.20306 0.77315 0.86610 0.83823 1.90666 1.52669 1.16244 1.84721 1.48396 1.67002 1.09312 1.08991 1.21969 1.00887 0.96131 0.81656 1.23238 1.02730 0.94792 0.97715 1.21491 0.96366 0.86194 0.90571 0.92051 1.42357 1.15138 1.26757 1.52345 1.19551 0.96163 1.04102 1.17255 0.90391 1.25495 0.97900 0.99963 1.02953 1.69795 1.17196 1.26098 1.48547 0.85215 0.78592 0.77418 0.78964 1.21497 1.22566 1.19493 1.22609 1.01034 0.79429 0.99455 0.90734 0.90474 0.90647 0.73838 0.80787 0.80255 0.90910 0.90850 0.90258 0.91516 0.79008 0.94010 0.90249 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.47 71.98 0.68 -2.10 16 2 C 0.13 2.72 2.54 44.24 0.11 2.84 16 3 H 0.10 2.45 6.07 -2.39 -0.01 2.43 16 4 N -0.70 -11.45 5.05 -446.10 -2.25 -13.71 16 5 C 0.52 9.21 7.56 87.65 0.66 9.87 16 6 O -0.56 -15.41 14.50 -3.05 -0.04 -15.45 16 7 C -0.18 -1.58 5.75 29.84 0.17 -1.41 16 8 C 0.47 7.64 2.89 71.98 0.21 7.85 16 9 F -0.19 -4.01 16.40 44.97 0.74 -3.28 16 10 F -0.18 -2.61 17.32 44.97 0.78 -1.83 16 11 F -0.19 -4.28 16.40 44.97 0.74 -3.54 16 12 C 0.53 13.04 7.04 87.66 0.62 13.65 16 13 O -0.56 -15.66 16.36 -3.03 -0.05 -15.71 16 14 N -0.60 -15.55 3.32 -811.37 -2.70 -18.25 16 15 C 0.12 2.95 6.87 86.73 0.60 3.54 16 16 C -0.14 -4.30 6.64 31.79 0.21 -4.09 16 17 C 0.16 5.66 3.70 46.46 0.17 5.83 16 18 H 0.06 2.18 8.13 -2.39 -0.02 2.16 16 19 N -0.73 -33.12 5.28 -316.00 -1.67 -34.79 16 20 C -0.24 -12.33 9.98 84.03 0.84 -11.49 16 21 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 22 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 23 N -0.97 -56.48 13.06 21.65 0.28 -56.19 16 24 Si 0.97 44.30 29.55 68.60 2.03 46.33 16 25 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 26 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 C 0.10 2.76 6.24 86.93 0.54 3.30 16 29 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.42 5.24 7.80 -92.71 -0.72 4.52 16 33 H 0.17 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.18 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.38 18.48 7.71 -92.71 -0.71 17.76 16 40 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 41 H 0.08 2.22 8.00 -2.39 -0.02 2.20 16 42 H 0.09 2.29 6.89 -2.39 -0.02 2.28 16 Total: -1.00 -69.97 366.78 2.78 -67.19 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -0.35 Total: 24.81 kcal Atomic # 6 Polarization: 19.14 SS G_CDS: 5.28 Total: 24.42 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -6.34 Total: -122.93 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.09 Total: -31.17 kcal Atomic # 9 Polarization: -10.90 SS G_CDS: 2.25 Total: -8.65 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -69.97 2.78 -67.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182811986.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.065 kcal (2) G-P(sol) polarization free energy of solvation -69.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds