Wall clock time and date at job start Tue Mar 31 2020 20:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 110.38734 * 2 1 4 4 C 1.54791 * 110.52741 * 237.82320 * 2 1 3 5 5 N 1.48144 * 104.41821 * 265.22403 * 4 2 1 6 6 C 1.34769 * 127.84010 * 140.36729 * 5 4 2 7 7 O 1.21562 * 119.99835 * 2.84017 * 6 5 4 8 8 C 1.47840 * 120.00355 * 182.83891 * 6 5 4 9 9 C 1.39563 * 120.55524 * 150.88709 * 8 6 5 10 10 N 1.31657 * 120.59689 * 179.97438 * 9 8 6 11 11 C 1.31951 * 121.89293 * 359.97438 * 10 9 8 12 12 C 1.38427 * 121.06115 * 0.02562 * 11 10 9 13 13 Cl 1.73597 * 120.35733 * 179.97438 * 12 11 10 14 14 C 1.38504 * 119.27881 * 0.02562 * 12 11 10 15 15 C 1.48154 * 104.32188 * 320.10991 * 5 4 2 16 16 C 1.54289 * 110.34275 * 122.22546 * 2 1 3 17 17 C 1.53006 * 110.34099 * 0.02562 * 16 2 1 18 18 C 1.53002 * 110.34386 * 237.74568 * 16 2 1 19 19 N 1.46495 * 109.47105 * 183.00661 * 18 16 2 20 20 C 1.36934 * 120.00157 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00012 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99985 * 180.02562 * 20 19 18 23 23 N 1.31621 * 120.00247 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99779 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47115 * 90.00148 * 24 22 20 26 26 H 1.48501 * 109.46935 * 209.99858 * 24 22 20 27 27 H 1.48493 * 109.47192 * 330.00140 * 24 22 20 28 28 H 1.08991 * 109.47345 * 297.77215 * 1 2 3 29 29 H 1.09005 * 109.46869 * 57.77327 * 1 2 3 30 30 H 1.09000 * 109.46923 * 177.76753 * 1 2 3 31 31 H 1.09004 * 110.54000 * 146.48241 * 4 2 1 32 32 H 1.08995 * 110.46062 * 23.92449 * 4 2 1 33 33 H 1.08000 * 119.70087 * 359.97438 * 9 8 6 34 34 H 1.07996 * 119.46723 * 179.72453 * 11 10 9 35 35 H 1.08007 * 120.86544 * 180.02562 * 14 12 11 36 36 H 1.08992 * 110.40573 * 158.63319 * 15 5 4 37 37 H 1.09002 * 110.40518 * 280.94168 * 15 5 4 38 38 H 1.08994 * 109.46895 * 176.98865 * 17 16 2 39 39 H 1.08993 * 109.47328 * 296.99155 * 17 16 2 40 40 H 1.09000 * 109.46789 * 56.98963 * 17 16 2 41 41 H 1.08993 * 109.46977 * 303.01220 * 18 16 2 42 42 H 1.09003 * 109.46930 * 63.00746 * 18 16 2 43 43 H 0.97008 * 119.99790 * 0.02562 * 19 18 16 44 44 H 0.96998 * 120.00041 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0218 0.0000 4 6 2.0728 -0.7720 -1.2270 5 7 2.3140 -2.1438 -0.7225 6 6 2.0775 -3.3105 -1.3543 7 8 1.6589 -3.3098 -2.4955 8 6 2.3273 -4.5914 -0.6594 9 6 1.5830 -5.7282 -0.9779 10 7 1.8050 -6.8694 -0.3600 11 6 2.7287 -6.9878 0.5747 12 6 3.5094 -5.9074 0.9483 13 17 4.7190 -6.0836 2.1809 14 6 3.3141 -4.6842 0.3288 15 6 2.8802 -1.9421 0.6316 16 6 2.0664 -0.7714 1.2238 17 6 0.9061 -1.3039 2.0672 18 6 2.9692 0.1309 2.0675 19 7 3.5244 -0.6396 3.1830 20 6 4.3675 -0.0376 4.0784 21 1 4.6229 1.0053 3.9625 22 6 4.8940 -0.7678 5.1350 23 7 4.5832 -2.0390 5.2760 24 14 6.0437 0.0537 6.3569 25 1 5.2509 0.6276 7.4737 26 1 6.9972 -0.9511 6.8920 27 1 6.7968 1.1375 5.6764 28 1 -0.3633 0.4788 0.9092 29 1 -0.3633 0.5481 -0.8694 30 1 -0.3633 -1.0269 -0.0400 31 1 3.0039 -0.3267 -1.5777 32 1 1.3322 -0.7858 -2.0266 33 1 0.8180 -5.6713 -1.7382 34 1 2.8747 -7.9417 1.0595 35 1 3.9089 -3.8244 0.6001 36 1 2.7496 -2.8398 1.2358 37 1 3.9360 -1.6789 0.5668 38 1 1.2996 -1.8908 2.8971 39 1 0.3262 -0.4672 2.4567 40 1 0.2660 -1.9329 1.4486 41 1 3.7817 0.5121 1.4492 42 1 2.3865 0.9657 2.4570 43 1 3.2953 -1.5765 3.2868 44 1 4.9508 -2.5492 6.0145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182888842.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:15 Heat of formation + Delta-G solvation = 18.697563 kcal Electronic energy + Delta-G solvation = -27776.306718 eV Core-core repulsion = 23948.228362 eV Total energy + Delta-G solvation = -3828.078355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -41.04701 -39.85827 -38.22358 -36.66419 -34.84801 -33.74157 -32.59205 -31.55739 -31.29516 -29.69146 -27.65063 -25.90364 -25.79644 -24.45312 -23.71801 -23.15329 -21.23081 -20.03415 -18.75685 -17.69823 -17.27807 -16.98744 -16.74035 -16.20624 -15.68620 -14.98902 -14.75252 -14.46807 -14.30652 -14.26165 -13.86485 -13.65828 -13.31221 -13.15848 -13.08083 -12.70634 -12.66554 -12.24469 -12.10488 -12.02674 -11.56037 -11.41374 -11.30083 -11.23090 -11.07091 -10.86875 -10.55963 -10.43105 -10.37322 -10.30179 -10.05701 -9.93457 -9.68472 -9.63874 -9.18294 -8.94031 -8.74437 -6.98926 -5.82263 -3.11129 0.37686 0.78580 1.91381 2.59941 2.79055 3.39452 3.45417 3.46466 3.47734 4.06027 4.25835 4.42347 4.47498 4.52259 4.62717 4.64372 4.85477 4.95266 5.05528 5.23058 5.28198 5.40504 5.51357 5.55296 5.58264 5.59619 5.65003 5.72076 5.78521 5.85606 5.89154 5.94571 6.03296 6.09184 6.16128 6.17425 6.34021 6.47258 6.57674 6.67097 6.75133 7.39273 7.51527 7.65303 7.96636 8.35830 9.47911 10.03209 10.38004 11.39934 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.008967 B = 0.004909 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.918157 B = 5702.205393 C = 8266.723092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.090 0.910 4 C 0.111 3.889 5 N -0.611 5.611 6 C 0.586 3.414 7 O -0.539 6.539 8 C -0.167 4.167 9 C 0.155 3.845 10 N -0.472 5.472 11 C 0.130 3.870 12 C -0.093 4.093 13 Cl -0.030 7.030 14 C -0.041 4.041 15 C 0.098 3.902 16 C -0.074 4.074 17 C -0.133 4.133 18 C 0.167 3.833 19 N -0.730 5.730 20 C -0.241 4.241 21 H 0.069 0.931 22 C -0.009 4.009 23 N -0.929 5.929 24 Si 0.904 3.096 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.172 0.828 34 H 0.170 0.830 35 H 0.163 0.837 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.022 0.978 42 H 0.024 0.976 43 H 0.383 0.617 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.903 -4.424 -11.607 13.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.108 0.892 4 C -0.011 4.011 5 N -0.343 5.343 6 C 0.374 3.626 7 O -0.417 6.417 8 C -0.173 4.173 9 C -0.003 4.003 10 N -0.180 5.180 11 C -0.027 4.027 12 C -0.122 4.122 13 Cl -0.002 7.002 14 C -0.067 4.067 15 C -0.024 4.024 16 C -0.075 4.075 17 C -0.191 4.191 18 C 0.039 3.961 19 N -0.375 5.375 20 C -0.373 4.373 21 H 0.087 0.913 22 C -0.206 4.206 23 N -0.578 5.578 24 Si 0.735 3.265 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.189 0.811 34 H 0.187 0.813 35 H 0.180 0.820 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.040 0.960 42 H 0.042 0.958 43 H 0.218 0.782 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.425 -5.151 -12.295 14.798 hybrid contribution 1.355 0.900 1.335 2.105 sum -5.070 -4.252 -10.960 12.802 Atomic orbital electron populations 1.21895 0.94420 1.01896 1.01627 1.22228 0.96377 0.99560 0.93546 0.89192 1.22537 1.01053 0.80480 0.97025 1.48894 1.62044 1.05356 1.18020 1.17477 0.77854 0.82013 0.85234 1.90792 1.46997 1.86878 1.17058 1.20919 1.00390 0.96238 0.99717 1.23017 0.95999 0.85971 0.95351 1.67930 1.16793 1.25750 1.07538 1.23048 0.89211 0.98069 0.92383 1.22084 0.97143 0.96154 0.96855 1.98454 1.52984 1.97706 1.51011 1.22274 0.95596 0.97514 0.91328 1.23044 0.98164 0.99579 0.81658 1.21709 0.96148 0.94939 0.94698 1.21881 0.96858 1.01017 0.99302 1.20731 0.93350 0.92903 0.89123 1.42355 1.55893 1.10936 1.28293 1.19179 1.19556 0.94719 1.03800 0.91263 1.24693 1.00913 0.95892 0.99055 1.69639 1.48405 1.06901 1.32823 0.86249 0.80521 0.78181 0.81572 1.21769 1.21824 1.20812 0.91849 0.93039 0.92469 0.90754 0.89811 0.81083 0.81302 0.81959 0.89367 0.89504 0.91599 0.92153 0.93320 0.96048 0.95772 0.78228 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 7.94 37.16 0.30 -1.20 16 2 C -0.10 -1.12 3.31 -89.00 -0.29 -1.42 16 3 H 0.09 0.97 7.71 -51.93 -0.40 0.57 16 4 C 0.11 1.31 6.61 -2.19 -0.01 1.29 16 5 N -0.61 -8.11 3.31 -170.17 -0.56 -8.68 16 6 C 0.59 8.42 7.69 -12.33 -0.09 8.33 16 7 O -0.54 -8.95 17.00 5.31 0.09 -8.86 16 8 C -0.17 -2.21 5.72 -104.83 -0.60 -2.81 16 9 C 0.15 1.92 10.77 -17.13 -0.18 1.73 16 10 N -0.47 -5.84 10.34 -12.88 -0.13 -5.98 16 11 C 0.13 1.49 10.97 -17.43 -0.19 1.30 16 12 C -0.09 -1.17 6.34 -39.41 -0.25 -1.42 16 13 Cl -0.03 -0.41 28.98 -51.86 -1.50 -1.91 16 14 C -0.04 -0.53 7.81 -38.84 -0.30 -0.84 16 15 C 0.10 1.37 3.78 -2.41 -0.01 1.36 16 16 C -0.07 -1.04 0.73 -153.11 -0.11 -1.15 16 17 C -0.13 -1.92 7.08 37.16 0.26 -1.66 16 18 C 0.17 2.95 4.85 -4.04 -0.02 2.93 16 19 N -0.73 -16.54 5.12 -59.91 -0.31 -16.85 16 20 C -0.24 -6.30 9.99 -15.06 -0.15 -6.45 16 21 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -26.37 13.06 55.49 0.72 -25.64 16 24 Si 0.90 21.56 29.55 -169.99 -5.02 16.53 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H 0.06 0.67 6.88 -51.93 -0.36 0.31 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.65 6.72 -51.93 -0.35 0.30 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.98 7.64 -51.93 -0.40 0.58 16 33 H 0.17 1.88 7.92 -52.49 -0.42 1.46 16 34 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.16 2.18 5.30 -52.48 -0.28 1.90 16 36 H 0.09 1.30 5.02 -51.93 -0.26 1.04 16 37 H 0.09 1.28 7.80 -51.93 -0.41 0.88 16 38 H 0.07 1.11 7.01 -51.93 -0.36 0.75 16 39 H 0.06 0.84 6.98 -51.93 -0.36 0.48 16 40 H 0.05 0.65 6.61 -51.93 -0.34 0.30 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.38 9.08 6.28 -40.82 -0.26 8.82 16 44 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -29.80 366.45 -8.80 -38.61 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.85 Total: 7.60 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -1.76 Total: -0.34 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.28 Total: -57.15 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.50 Total: -1.91 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.80 -8.80 -38.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182888842.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.304 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds