Wall clock time and date at job start Tue Mar 31 2020 20:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 110.38734 * 2 1 4 4 C 1.54791 * 110.52741 * 237.82320 * 2 1 3 5 5 N 1.48144 * 104.41821 * 265.22403 * 4 2 1 6 6 C 1.34769 * 127.84010 * 140.36729 * 5 4 2 7 7 O 1.21562 * 119.99835 * 2.84017 * 6 5 4 8 8 C 1.47840 * 120.00355 * 182.83891 * 6 5 4 9 9 C 1.39563 * 120.55524 * 150.88709 * 8 6 5 10 10 N 1.31657 * 120.59689 * 179.97438 * 9 8 6 11 11 C 1.31951 * 121.89293 * 359.97438 * 10 9 8 12 12 C 1.38427 * 121.06115 * 0.02562 * 11 10 9 13 13 Cl 1.73597 * 120.35733 * 179.97438 * 12 11 10 14 14 C 1.38504 * 119.27881 * 0.02562 * 12 11 10 15 15 C 1.48154 * 104.32188 * 320.10991 * 5 4 2 16 16 C 1.54289 * 110.34275 * 122.22546 * 2 1 3 17 17 C 1.53006 * 110.34099 * 0.02562 * 16 2 1 18 18 C 1.53002 * 110.34386 * 237.74568 * 16 2 1 19 19 N 1.46495 * 109.47105 * 183.00661 * 18 16 2 20 20 C 1.36934 * 120.00157 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00012 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99985 * 180.02562 * 20 19 18 23 23 N 1.31621 * 120.00247 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99779 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47115 * 90.00148 * 24 22 20 26 26 H 1.48501 * 109.46935 * 209.99858 * 24 22 20 27 27 H 1.48493 * 109.47192 * 330.00140 * 24 22 20 28 28 H 1.08991 * 109.47345 * 297.77215 * 1 2 3 29 29 H 1.09005 * 109.46869 * 57.77327 * 1 2 3 30 30 H 1.09000 * 109.46923 * 177.76753 * 1 2 3 31 31 H 1.09004 * 110.54000 * 146.48241 * 4 2 1 32 32 H 1.08995 * 110.46062 * 23.92449 * 4 2 1 33 33 H 1.08000 * 119.70087 * 359.97438 * 9 8 6 34 34 H 1.07996 * 119.46723 * 179.72453 * 11 10 9 35 35 H 1.08007 * 120.86544 * 180.02562 * 14 12 11 36 36 H 1.08992 * 110.40573 * 158.63319 * 15 5 4 37 37 H 1.09002 * 110.40518 * 280.94168 * 15 5 4 38 38 H 1.08994 * 109.46895 * 176.98865 * 17 16 2 39 39 H 1.08993 * 109.47328 * 296.99155 * 17 16 2 40 40 H 1.09000 * 109.46789 * 56.98963 * 17 16 2 41 41 H 1.08993 * 109.46977 * 303.01220 * 18 16 2 42 42 H 1.09003 * 109.46930 * 63.00746 * 18 16 2 43 43 H 0.97008 * 119.99790 * 0.02562 * 19 18 16 44 44 H 0.96998 * 120.00041 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0218 0.0000 4 6 2.0728 -0.7720 -1.2270 5 7 2.3140 -2.1438 -0.7225 6 6 2.0775 -3.3105 -1.3543 7 8 1.6589 -3.3098 -2.4955 8 6 2.3273 -4.5914 -0.6594 9 6 1.5830 -5.7282 -0.9779 10 7 1.8050 -6.8694 -0.3600 11 6 2.7287 -6.9878 0.5747 12 6 3.5094 -5.9074 0.9483 13 17 4.7190 -6.0836 2.1809 14 6 3.3141 -4.6842 0.3288 15 6 2.8802 -1.9421 0.6316 16 6 2.0664 -0.7714 1.2238 17 6 0.9061 -1.3039 2.0672 18 6 2.9692 0.1309 2.0675 19 7 3.5244 -0.6396 3.1830 20 6 4.3675 -0.0376 4.0784 21 1 4.6229 1.0053 3.9625 22 6 4.8940 -0.7678 5.1350 23 7 4.5832 -2.0390 5.2760 24 14 6.0437 0.0537 6.3569 25 1 5.2509 0.6276 7.4737 26 1 6.9972 -0.9511 6.8920 27 1 6.7968 1.1375 5.6764 28 1 -0.3633 0.4788 0.9092 29 1 -0.3633 0.5481 -0.8694 30 1 -0.3633 -1.0269 -0.0400 31 1 3.0039 -0.3267 -1.5777 32 1 1.3322 -0.7858 -2.0266 33 1 0.8180 -5.6713 -1.7382 34 1 2.8747 -7.9417 1.0595 35 1 3.9089 -3.8244 0.6001 36 1 2.7496 -2.8398 1.2358 37 1 3.9360 -1.6789 0.5668 38 1 1.2996 -1.8908 2.8971 39 1 0.3262 -0.4672 2.4567 40 1 0.2660 -1.9329 1.4486 41 1 3.7817 0.5121 1.4492 42 1 2.3865 0.9657 2.4570 43 1 3.2953 -1.5765 3.2868 44 1 4.9508 -2.5492 6.0145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182888842.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:14 Heat of formation + Delta-G solvation = 1.457738 kcal Electronic energy + Delta-G solvation = -27777.054292 eV Core-core repulsion = 23948.228362 eV Total energy + Delta-G solvation = -3828.825930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.11050 -40.91254 -39.39248 -37.70482 -36.43669 -34.94312 -33.86215 -32.92511 -32.32959 -31.16598 -28.75958 -27.34284 -26.88878 -25.69927 -24.78578 -24.62888 -22.45302 -21.12361 -20.00052 -19.07445 -18.55485 -18.18440 -17.76339 -17.34814 -16.86976 -16.44516 -16.02408 -15.66755 -15.56305 -15.49132 -15.09747 -14.83973 -14.67830 -14.48554 -14.34523 -13.90566 -13.71487 -13.40928 -13.18887 -13.11465 -13.01125 -12.82146 -12.58889 -12.50437 -12.40585 -12.29662 -12.07476 -11.93981 -11.57422 -11.51801 -11.38158 -11.23677 -11.00843 -10.88736 -10.69387 -10.19826 -9.84112 -8.90305 -7.87933 -5.14601 -0.61808 -0.22737 0.89044 1.50296 1.50912 1.51322 1.58555 1.72150 2.47021 2.60020 3.04006 3.28510 3.37203 3.46863 3.49447 3.52386 3.61299 3.78067 3.93245 4.09804 4.15458 4.22115 4.26936 4.33940 4.50289 4.57772 4.63435 4.63611 4.72465 4.75220 4.83231 4.84734 4.96110 5.02929 5.08519 5.14916 5.18426 5.25315 5.35749 5.42148 5.56564 5.58690 6.28755 6.33621 6.52862 6.85151 7.42133 8.17350 8.40903 9.34359 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.008967 B = 0.004909 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.918157 B = 5702.205393 C = 8266.723092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 H 0.105 0.895 4 C 0.109 3.891 5 N -0.607 5.607 6 C 0.587 3.413 7 O -0.563 6.563 8 C -0.176 4.176 9 C 0.158 3.842 10 N -0.478 5.478 11 C 0.140 3.860 12 C -0.100 4.100 13 Cl -0.040 7.040 14 C -0.043 4.043 15 C 0.105 3.895 16 C -0.067 4.067 17 C -0.125 4.125 18 C 0.167 3.833 19 N -0.738 5.738 20 C -0.239 4.239 21 H 0.073 0.927 22 C -0.066 4.066 23 N -0.960 5.960 24 Si 0.960 3.040 25 H -0.292 1.292 26 H -0.300 1.300 27 H -0.272 1.272 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.185 0.815 34 H 0.197 0.803 35 H 0.156 0.844 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.036 0.964 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.027 0.973 42 H 0.026 0.974 43 H 0.376 0.624 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.479 -3.696 -12.530 14.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.123 0.877 4 C -0.013 4.013 5 N -0.338 5.338 6 C 0.376 3.624 7 O -0.443 6.443 8 C -0.182 4.182 9 C 0.000 4.000 10 N -0.186 5.186 11 C -0.017 4.017 12 C -0.129 4.129 13 Cl -0.012 7.012 14 C -0.070 4.070 15 C -0.017 4.017 16 C -0.068 4.068 17 C -0.182 4.182 18 C 0.040 3.960 19 N -0.382 5.382 20 C -0.371 4.371 21 H 0.091 0.909 22 C -0.259 4.259 23 N -0.610 5.610 24 Si 0.790 3.210 25 H -0.219 1.219 26 H -0.227 1.227 27 H -0.197 1.197 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.202 0.798 34 H 0.214 0.786 35 H 0.173 0.827 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.209 0.791 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.009 -4.375 -13.242 15.608 hybrid contribution 1.507 0.703 1.576 2.291 sum -5.502 -3.672 -11.665 13.410 Atomic orbital electron populations 1.21864 0.93371 1.01639 1.02612 1.22206 0.97151 0.99760 0.91651 0.87714 1.22700 1.01871 0.79532 0.97174 1.48886 1.61456 1.05904 1.17580 1.17590 0.77412 0.82462 0.84928 1.90776 1.48344 1.87223 1.17970 1.20858 1.00986 0.96200 1.00112 1.23248 0.95828 0.85656 0.95224 1.68025 1.17107 1.25615 1.07879 1.23472 0.87993 0.98707 0.91550 1.22131 0.97431 0.96443 0.96906 1.98451 1.53505 1.97716 1.51493 1.22231 0.95613 0.97618 0.91494 1.22868 0.97704 0.99207 0.81970 1.21586 0.95376 0.94690 0.95181 1.21795 0.96989 1.00945 0.98513 1.20863 0.93865 0.93087 0.88135 1.42506 1.55585 1.10961 1.29103 1.19539 1.18908 0.94861 1.03821 0.90890 1.25350 1.02987 0.96506 1.01043 1.69776 1.49885 1.08039 1.33320 0.85344 0.78747 0.77286 0.79593 1.21903 1.22673 1.19693 0.91692 0.91195 0.93403 0.89600 0.89301 0.79818 0.78603 0.82706 0.90279 0.90328 0.94507 0.91629 0.92141 0.95476 0.95612 0.79072 0.94277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 7.94 71.98 0.57 -1.98 16 2 C -0.09 -1.82 3.31 -9.74 -0.03 -1.85 16 3 H 0.10 1.92 7.71 -2.38 -0.02 1.90 16 4 C 0.11 2.33 6.61 86.67 0.57 2.90 16 5 N -0.61 -15.49 3.31 -810.57 -2.68 -18.17 16 6 C 0.59 16.41 7.69 86.79 0.67 17.08 16 7 O -0.56 -18.15 17.00 -3.91 -0.07 -18.22 16 8 C -0.18 -4.55 5.72 -20.00 -0.11 -4.67 16 9 C 0.16 3.76 10.77 85.04 0.92 4.67 16 10 N -0.48 -11.17 10.34 -194.67 -2.01 -13.18 16 11 C 0.14 3.02 10.97 84.72 0.93 3.95 16 12 C -0.10 -2.48 6.34 22.38 0.14 -2.34 16 13 Cl -0.04 -1.09 28.98 -2.72 -0.08 -1.17 16 14 C -0.04 -1.13 7.81 22.75 0.18 -0.95 16 15 C 0.10 2.90 3.78 86.53 0.33 3.22 16 16 C -0.07 -1.81 0.73 -51.27 -0.04 -1.85 16 17 C -0.13 -3.52 7.08 71.98 0.51 -3.01 16 18 C 0.17 5.73 4.85 86.38 0.42 6.15 16 19 N -0.74 -33.41 5.12 -343.47 -1.76 -35.16 16 20 C -0.24 -12.39 9.99 84.03 0.84 -11.55 16 21 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 22 C -0.07 -3.57 5.50 84.86 0.47 -3.11 16 23 N -0.96 -55.26 13.06 21.65 0.28 -54.98 16 24 Si 0.96 44.39 29.55 68.60 2.03 46.41 16 25 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 26 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 H 0.06 1.20 6.88 -2.39 -0.02 1.18 16 29 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.05 0.98 6.72 -2.39 -0.02 0.97 16 31 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.09 1.87 7.64 -2.39 -0.02 1.85 16 33 H 0.18 3.81 7.92 -2.91 -0.02 3.78 16 34 H 0.20 3.04 8.06 -2.91 -0.02 3.02 16 35 H 0.16 4.25 5.30 -2.91 -0.02 4.23 16 36 H 0.08 2.36 5.02 -2.39 -0.01 2.35 16 37 H 0.08 2.32 7.80 -2.39 -0.02 2.30 16 38 H 0.04 1.24 7.01 -2.39 -0.02 1.23 16 39 H 0.06 1.75 6.98 -2.39 -0.02 1.74 16 40 H 0.06 1.54 6.61 -2.39 -0.02 1.53 16 41 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.38 18.11 6.28 -92.70 -0.58 17.53 16 44 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -62.66 366.45 2.52 -60.14 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.46 Total: 27.66 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 6.36 Total: 6.67 kcal Atomic # 7 Polarization: -115.32 SS G_CDS: -6.18 Total: -121.50 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.07 Total: -18.22 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -62.66 2.52 -60.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182888842.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.599 kcal (2) G-P(sol) polarization free energy of solvation -62.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds