Wall clock time and date at job start Tue Mar 31 2020 21:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46955 * 2 1 4 4 C 1.50692 * 109.47320 * 239.99907 * 2 1 3 5 5 O 1.21287 * 120.00182 * 271.48128 * 4 2 1 6 6 N 1.34779 * 120.00072 * 91.48826 * 4 2 1 7 7 C 1.47021 * 125.64812 * 174.95095 * 6 4 2 8 8 C 1.54322 * 107.27094 * 181.09515 * 7 6 4 9 9 C 1.55159 * 102.94349 * 22.18855 * 8 7 6 10 10 H 1.08994 * 111.00205 * 82.57841 * 9 8 7 11 11 N 1.46901 * 111.03897 * 206.41376 * 9 8 7 12 12 C 1.46904 * 110.99861 * 270.39600 * 11 9 8 13 13 C 1.50699 * 109.46988 * 179.97438 * 12 11 9 14 14 O 1.21291 * 120.00028 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99725 * 179.97438 * 13 12 11 16 16 C 1.37104 * 119.99849 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99798 * 359.97438 * 16 15 13 18 18 C 1.38946 * 119.99891 * 180.02562 * 16 15 13 19 19 N 1.31410 * 119.99921 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00194 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46944 * 90.00150 * 20 18 16 22 22 H 1.48494 * 109.47262 * 210.00131 * 20 18 16 23 23 H 1.48496 * 109.47079 * 330.00488 * 20 18 16 24 24 C 1.47427 * 125.64710 * 354.98874 * 6 4 2 25 25 C 1.53005 * 109.46946 * 119.99675 * 2 1 3 26 26 F 1.39899 * 109.46831 * 180.02562 * 25 2 1 27 27 F 1.39903 * 109.47316 * 300.00077 * 25 2 1 28 28 F 1.39898 * 109.47033 * 60.00066 * 25 2 1 29 29 H 1.09005 * 109.46689 * 55.88317 * 1 2 3 30 30 H 1.08997 * 109.46639 * 175.88331 * 1 2 3 31 31 H 1.08999 * 109.46920 * 295.88137 * 1 2 3 32 32 H 1.09004 * 109.88375 * 300.50745 * 7 6 4 33 33 H 1.08998 * 109.88688 * 61.51697 * 7 6 4 34 34 H 1.09007 * 110.71770 * 263.82647 * 8 7 6 35 35 H 1.09000 * 110.72394 * 140.55760 * 8 7 6 36 36 H 1.00899 * 111.00307 * 146.44044 * 11 9 8 37 37 H 1.08997 * 109.46948 * 300.00262 * 12 11 9 38 38 H 1.09002 * 109.46882 * 59.99717 * 12 11 9 39 39 H 0.96995 * 120.00112 * 0.02562 * 15 13 12 40 40 H 0.96997 * 120.00238 * 180.02562 * 19 18 16 41 41 H 1.09000 * 110.36493 * 36.99936 * 24 6 4 42 42 H 1.09000 * 110.45834 * 274.72283 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.2090 -1.9101 -1.2084 6 7 2.2856 -0.0125 -2.3553 7 6 2.8747 -0.5573 -3.5872 8 6 3.0013 0.6094 -4.5894 9 6 3.0008 1.8591 -3.6697 10 1 3.9950 2.0460 -3.2640 11 7 2.4963 3.0394 -4.3842 12 6 3.5896 3.7564 -5.0540 13 6 3.0348 4.9578 -5.7750 14 8 1.8458 5.1938 -5.7344 15 7 3.8601 5.7707 -6.4640 16 6 3.3555 6.8640 -7.1196 17 1 2.2967 7.0736 -7.0841 18 6 4.2062 7.7016 -7.8303 19 7 3.7226 8.7498 -8.4582 20 14 6.0375 7.3386 -7.8922 21 1 6.3298 6.4644 -9.0565 22 1 6.7902 8.6114 -8.0276 23 1 6.4484 6.6512 -6.6417 24 6 2.0185 1.4237 -2.5539 25 6 2.0400 -0.7212 1.2493 26 9 3.4390 -0.7207 1.2496 27 9 1.5736 -0.0617 2.3916 28 9 1.5737 -2.0402 1.2494 29 1 -0.3633 0.5764 -0.8509 30 1 -0.3632 -1.0250 -0.0738 31 1 -0.3633 0.4486 0.9246 32 1 3.8601 -0.9722 -3.3750 33 1 2.2268 -1.3323 -3.9968 34 1 2.1483 0.6294 -5.2677 35 1 3.9361 0.5403 -5.1457 36 1 1.9913 3.6511 -3.7606 37 1 4.3187 4.0821 -4.3121 38 1 4.0728 3.0935 -5.7717 39 1 4.8110 5.5821 -6.4961 40 1 4.3164 9.3344 -8.9548 41 1 2.2175 1.9770 -1.6361 42 1 0.9881 1.5789 -2.8737 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184900116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:41 Heat of formation + Delta-G solvation = -212.045253 kcal Electronic energy + Delta-G solvation = -29340.674665 eV Core-core repulsion = 24520.024646 eV Total energy + Delta-G solvation = -4820.650020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.45126 -47.98365 -47.84039 -40.67447 -38.76943 -37.96726 -34.96241 -34.53017 -33.91459 -31.74701 -30.97052 -29.26198 -26.97646 -26.39170 -24.81761 -23.81102 -22.66156 -20.87640 -20.04759 -19.47130 -19.06375 -18.75661 -18.45212 -17.74009 -17.46611 -16.84960 -16.15983 -15.62784 -15.46512 -15.11210 -14.86863 -14.73629 -14.66172 -14.33203 -14.19042 -14.07062 -14.01016 -13.91066 -13.74024 -13.52533 -13.49079 -13.20839 -13.09064 -12.76234 -12.62195 -12.50815 -12.19916 -11.94211 -11.90657 -11.70199 -11.43120 -11.24383 -11.04357 -10.65594 -10.38695 -10.04065 -9.64500 -9.13380 -8.72533 -8.38813 -8.25102 -6.37502 -3.89484 1.84925 2.15131 2.51734 2.96672 3.01761 3.10517 3.26448 3.44212 3.57854 3.64596 3.87914 4.03632 4.04711 4.16521 4.32058 4.33084 4.47582 4.67850 4.79175 4.89290 4.95557 4.99281 5.05460 5.13121 5.22655 5.38246 5.44295 5.46156 5.53983 5.62130 5.67119 5.79384 5.81380 5.97031 6.86232 6.91742 7.33106 7.50544 7.53015 8.06956 8.51921 8.87794 9.35003 9.73759 10.75415 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.023868 B = 0.002033 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.830053 B =13772.540717 C =13922.779577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.161 4.161 3 H 0.134 0.866 4 C 0.538 3.462 5 O -0.518 6.518 6 N -0.608 5.608 7 C 0.109 3.891 8 C -0.123 4.123 9 C 0.073 3.927 10 H 0.063 0.937 11 N -0.655 5.655 12 C 0.048 3.952 13 C 0.448 3.552 14 O -0.565 6.565 15 N -0.589 5.589 16 C -0.307 4.307 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.879 5.879 20 Si 0.880 3.120 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.270 1.270 24 C 0.092 3.908 25 C 0.470 3.530 26 F -0.180 7.180 27 F -0.179 7.179 28 F -0.165 7.165 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.354 0.646 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.371 0.629 40 H 0.274 0.726 41 H 0.078 0.922 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 -18.311 17.185 25.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.184 4.184 3 H 0.151 0.849 4 C 0.324 3.676 5 O -0.394 6.394 6 N -0.342 5.342 7 C -0.013 4.013 8 C -0.161 4.161 9 C -0.038 4.038 10 H 0.081 0.919 11 N -0.288 5.288 12 C -0.084 4.084 13 C 0.234 3.766 14 O -0.447 6.447 15 N -0.228 5.228 16 C -0.435 4.435 17 H 0.138 0.862 18 C -0.161 4.161 19 N -0.519 5.519 20 Si 0.707 3.293 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.031 4.031 25 C 0.416 3.584 26 F -0.161 7.161 27 F -0.160 7.160 28 F -0.146 7.146 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.175 0.825 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.203 0.797 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.246 -19.012 16.616 25.280 hybrid contribution 2.154 0.386 0.735 2.308 sum 0.908 -18.626 17.351 25.472 Atomic orbital electron populations 1.21804 0.88546 1.05035 1.05115 1.22618 1.01994 1.02686 0.91053 0.84865 1.19345 0.78303 0.86939 0.83038 1.90824 1.51830 1.13443 1.83270 1.48252 1.62038 1.10598 1.13322 1.22055 0.98696 0.97148 0.83406 1.22764 1.04283 0.91922 0.97181 1.22674 0.96549 0.92121 0.92504 0.91885 1.60068 1.25047 1.09400 1.34304 1.21764 0.92728 0.95608 0.98332 1.19634 0.87349 0.85202 0.84420 1.90572 1.15395 1.74098 1.64644 1.42206 1.08343 1.25272 1.46967 1.19425 0.97370 1.00370 1.26357 0.86240 1.25050 0.98556 0.95787 0.96742 1.69617 1.35823 1.14284 1.32181 0.86666 0.85138 0.78862 0.78668 1.19558 1.20155 1.19540 1.22601 1.01028 0.80424 0.99038 1.19823 0.75664 0.78232 0.84711 1.93212 1.29721 1.96434 1.96733 1.93197 1.88481 1.80836 1.53501 1.93244 1.88136 1.36630 1.96604 0.89470 0.90272 0.89660 0.91107 0.90765 0.88855 0.89835 0.82507 0.93467 0.89271 0.79665 0.91535 0.90345 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.93 37.16 0.33 -0.51 16 2 C -0.16 -1.21 2.29 -91.77 -0.21 -1.42 16 3 H 0.13 0.67 6.51 -51.93 -0.34 0.33 16 4 C 0.54 5.52 6.62 -10.99 -0.07 5.45 16 5 O -0.52 -7.22 15.64 5.55 0.09 -7.14 16 6 N -0.61 -5.42 3.33 -170.52 -0.57 -5.98 16 7 C 0.11 0.95 6.87 -3.07 -0.02 0.92 16 8 C -0.12 -1.04 6.65 -24.90 -0.17 -1.21 16 9 C 0.07 0.65 3.34 -65.56 -0.22 0.43 16 10 H 0.06 0.53 7.87 -51.93 -0.41 0.12 16 11 N -0.65 -8.13 6.02 -105.72 -0.64 -8.76 16 12 C 0.05 0.69 6.05 -4.97 -0.03 0.66 16 13 C 0.45 9.37 7.82 -10.98 -0.09 9.29 16 14 O -0.57 -14.17 15.78 5.55 0.09 -14.09 16 15 N -0.59 -13.24 5.09 -10.96 -0.06 -13.29 16 16 C -0.31 -8.35 10.16 -14.93 -0.15 -8.50 16 17 H 0.12 3.74 7.39 -52.49 -0.39 3.35 16 18 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 19 N -0.88 -25.04 13.96 55.50 0.77 -24.26 16 20 Si 0.88 18.65 27.74 -169.99 -4.71 13.94 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.27 -5.15 6.52 56.52 0.37 -4.79 16 24 C 0.09 0.68 6.16 -2.53 -0.02 0.67 16 25 C 0.47 4.45 2.54 37.16 0.09 4.54 16 26 F -0.18 -1.95 17.02 2.25 0.04 -1.91 16 27 F -0.18 -1.55 16.73 2.25 0.04 -1.51 16 28 F -0.16 -1.88 15.47 2.25 0.03 -1.84 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.53 7.92 -51.93 -0.41 0.12 16 31 H 0.08 0.38 7.69 -51.93 -0.40 -0.02 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.35 4.46 8.18 -39.29 -0.32 4.14 16 37 H 0.05 0.58 8.09 -51.93 -0.42 0.16 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.37 7.26 5.76 -40.82 -0.24 7.03 16 40 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.08 0.43 6.66 -51.93 -0.35 0.08 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -33.85 361.80 -5.50 -39.35 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.39 Total: 8.70 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: -0.64 Total: 11.34 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.48 Total: -52.30 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: 0.17 Total: -21.22 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.11 Total: -5.26 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.71 Total: 13.94 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.85 -5.50 -39.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184900116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.693 kcal (2) G-P(sol) polarization free energy of solvation -33.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds