Wall clock time and date at job start Tue Mar 31 2020 21:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46955 * 2 1 4 4 C 1.50692 * 109.47320 * 239.99907 * 2 1 3 5 5 O 1.21287 * 120.00182 * 271.48128 * 4 2 1 6 6 N 1.34779 * 120.00072 * 91.48826 * 4 2 1 7 7 C 1.47021 * 125.64812 * 174.95095 * 6 4 2 8 8 C 1.54322 * 107.27094 * 181.09515 * 7 6 4 9 9 C 1.55159 * 102.94349 * 22.18855 * 8 7 6 10 10 H 1.08994 * 111.00205 * 82.57841 * 9 8 7 11 11 N 1.46901 * 111.03897 * 206.41376 * 9 8 7 12 12 C 1.46904 * 110.99861 * 270.39600 * 11 9 8 13 13 C 1.50699 * 109.46988 * 179.97438 * 12 11 9 14 14 O 1.21291 * 120.00028 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99725 * 179.97438 * 13 12 11 16 16 C 1.37104 * 119.99849 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99798 * 359.97438 * 16 15 13 18 18 C 1.38946 * 119.99891 * 180.02562 * 16 15 13 19 19 N 1.31410 * 119.99921 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00194 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46944 * 90.00150 * 20 18 16 22 22 H 1.48494 * 109.47262 * 210.00131 * 20 18 16 23 23 H 1.48496 * 109.47079 * 330.00488 * 20 18 16 24 24 C 1.47427 * 125.64710 * 354.98874 * 6 4 2 25 25 C 1.53005 * 109.46946 * 119.99675 * 2 1 3 26 26 F 1.39899 * 109.46831 * 180.02562 * 25 2 1 27 27 F 1.39903 * 109.47316 * 300.00077 * 25 2 1 28 28 F 1.39898 * 109.47033 * 60.00066 * 25 2 1 29 29 H 1.09005 * 109.46689 * 55.88317 * 1 2 3 30 30 H 1.08997 * 109.46639 * 175.88331 * 1 2 3 31 31 H 1.08999 * 109.46920 * 295.88137 * 1 2 3 32 32 H 1.09004 * 109.88375 * 300.50745 * 7 6 4 33 33 H 1.08998 * 109.88688 * 61.51697 * 7 6 4 34 34 H 1.09007 * 110.71770 * 263.82647 * 8 7 6 35 35 H 1.09000 * 110.72394 * 140.55760 * 8 7 6 36 36 H 1.00899 * 111.00307 * 146.44044 * 11 9 8 37 37 H 1.08997 * 109.46948 * 300.00262 * 12 11 9 38 38 H 1.09002 * 109.46882 * 59.99717 * 12 11 9 39 39 H 0.96995 * 120.00112 * 0.02562 * 15 13 12 40 40 H 0.96997 * 120.00238 * 180.02562 * 19 18 16 41 41 H 1.09000 * 110.36493 * 36.99936 * 24 6 4 42 42 H 1.09000 * 110.45834 * 274.72283 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.2090 -1.9101 -1.2084 6 7 2.2856 -0.0125 -2.3553 7 6 2.8747 -0.5573 -3.5872 8 6 3.0013 0.6094 -4.5894 9 6 3.0008 1.8591 -3.6697 10 1 3.9950 2.0460 -3.2640 11 7 2.4963 3.0394 -4.3842 12 6 3.5896 3.7564 -5.0540 13 6 3.0348 4.9578 -5.7750 14 8 1.8458 5.1938 -5.7344 15 7 3.8601 5.7707 -6.4640 16 6 3.3555 6.8640 -7.1196 17 1 2.2967 7.0736 -7.0841 18 6 4.2062 7.7016 -7.8303 19 7 3.7226 8.7498 -8.4582 20 14 6.0375 7.3386 -7.8922 21 1 6.3298 6.4644 -9.0565 22 1 6.7902 8.6114 -8.0276 23 1 6.4484 6.6512 -6.6417 24 6 2.0185 1.4237 -2.5539 25 6 2.0400 -0.7212 1.2493 26 9 3.4390 -0.7207 1.2496 27 9 1.5736 -0.0617 2.3916 28 9 1.5737 -2.0402 1.2494 29 1 -0.3633 0.5764 -0.8509 30 1 -0.3632 -1.0250 -0.0738 31 1 -0.3633 0.4486 0.9246 32 1 3.8601 -0.9722 -3.3750 33 1 2.2268 -1.3323 -3.9968 34 1 2.1483 0.6294 -5.2677 35 1 3.9361 0.5403 -5.1457 36 1 1.9913 3.6511 -3.7606 37 1 4.3187 4.0821 -4.3121 38 1 4.0728 3.0935 -5.7717 39 1 4.8110 5.5821 -6.4961 40 1 4.3164 9.3344 -8.9548 41 1 2.2175 1.9770 -1.6361 42 1 0.9881 1.5789 -2.8737 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184900116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:40 Heat of formation + Delta-G solvation = -238.468044 kcal Electronic energy + Delta-G solvation = -29341.820443 eV Core-core repulsion = 24520.024646 eV Total energy + Delta-G solvation = -4821.795798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.19368 -48.71471 -48.62351 -41.41595 -40.27470 -38.94984 -36.21119 -35.58082 -35.13262 -33.71359 -31.75636 -30.11267 -27.79582 -27.54313 -25.66117 -25.24774 -23.32771 -21.58728 -21.28074 -20.74858 -20.22680 -19.77247 -19.48656 -18.47531 -18.19330 -17.86408 -17.30944 -16.95826 -16.47275 -16.39699 -15.87454 -15.61906 -15.44726 -15.41045 -15.08562 -14.96273 -14.83640 -14.77629 -14.72615 -14.53362 -14.38996 -14.23293 -14.06693 -13.84726 -13.83091 -13.36697 -13.18088 -13.06422 -12.85511 -12.55599 -12.45019 -12.38377 -12.08623 -11.95872 -11.74800 -11.48127 -11.17528 -10.40093 -10.21846 -9.84965 -9.36764 -8.38713 -5.99452 1.12760 1.32286 1.38219 1.45415 1.46865 1.82535 1.99989 2.25380 2.58104 2.64482 2.92028 2.92531 3.18251 3.32498 3.44870 3.51315 3.71538 3.77814 3.86511 4.13452 4.17920 4.25427 4.35369 4.48178 4.56879 4.57074 4.60718 4.64952 4.78920 4.84404 4.95075 5.05416 5.14068 5.25136 5.55504 5.92524 6.04875 6.20785 6.40128 6.62351 6.79124 6.91543 7.43547 8.00090 8.78844 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.023868 B = 0.002033 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.830053 B =13772.540717 C =13922.779577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.153 4.153 3 H 0.165 0.835 4 C 0.533 3.467 5 O -0.563 6.563 6 N -0.605 5.605 7 C 0.108 3.892 8 C -0.117 4.117 9 C 0.076 3.924 10 H 0.081 0.919 11 N -0.670 5.670 12 C 0.063 3.937 13 C 0.449 3.551 14 O -0.613 6.613 15 N -0.593 5.593 16 C -0.326 4.326 17 H 0.056 0.944 18 C -0.017 4.017 19 N -0.936 5.936 20 Si 0.964 3.036 21 H -0.259 1.259 22 H -0.279 1.279 23 H -0.228 1.228 24 C 0.093 3.907 25 C 0.465 3.535 26 F -0.190 7.190 27 F -0.174 7.174 28 F -0.181 7.181 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.353 0.647 37 H 0.082 0.918 38 H 0.114 0.886 39 H 0.390 0.610 40 H 0.278 0.722 41 H 0.106 0.894 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.049 -19.185 18.432 26.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 H 0.182 0.818 4 C 0.321 3.679 5 O -0.442 6.442 6 N -0.337 5.337 7 C -0.014 4.014 8 C -0.155 4.155 9 C -0.035 4.035 10 H 0.099 0.901 11 N -0.304 5.304 12 C -0.069 4.069 13 C 0.237 3.763 14 O -0.497 6.497 15 N -0.234 5.234 16 C -0.456 4.456 17 H 0.074 0.926 18 C -0.215 4.215 19 N -0.577 5.577 20 Si 0.784 3.216 21 H -0.183 1.183 22 H -0.204 1.204 23 H -0.151 1.151 24 C -0.030 4.030 25 C 0.410 3.590 26 F -0.171 7.171 27 F -0.155 7.155 28 F -0.162 7.162 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.173 0.827 37 H 0.100 0.900 38 H 0.132 0.868 39 H 0.225 0.775 40 H 0.088 0.912 41 H 0.124 0.876 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.187 -19.899 17.879 26.778 hybrid contribution 1.231 0.632 0.368 1.431 sum 2.417 -19.267 18.247 26.647 Atomic orbital electron populations 1.21858 0.87216 1.04612 1.06646 1.22693 1.02939 1.03365 0.88513 0.81777 1.19787 0.77676 0.86554 0.83892 1.90804 1.53870 1.15437 1.84083 1.48304 1.61227 1.11235 1.12982 1.22058 0.98612 0.97230 0.83499 1.22714 1.04394 0.91580 0.96862 1.22699 0.97583 0.90502 0.92671 0.90130 1.60009 1.24999 1.10055 1.35320 1.21673 0.93355 0.92774 0.99106 1.21005 0.86623 0.85930 0.82703 1.90555 1.17938 1.75469 1.65780 1.42050 1.09502 1.24498 1.47399 1.18997 0.95092 1.02972 1.28495 0.92593 1.26119 1.05152 0.94852 0.95412 1.69805 1.38476 1.15913 1.33475 0.85372 0.76338 0.79072 0.80780 1.18343 1.20387 1.15111 1.22701 1.00843 0.79526 0.99918 1.20159 0.75229 0.77851 0.85713 1.93187 1.30647 1.96447 1.96836 1.93204 1.88336 1.80553 1.53407 1.93212 1.88264 1.38000 1.96728 0.87974 0.91732 0.88050 0.90973 0.91511 0.90184 0.88553 0.82712 0.90023 0.86768 0.77469 0.91244 0.87578 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.93 71.98 0.64 -0.71 16 2 C -0.15 -1.94 2.29 -11.54 -0.03 -1.97 16 3 H 0.16 1.00 6.51 -2.39 -0.02 0.98 16 4 C 0.53 10.11 6.62 87.65 0.58 10.69 16 5 O -0.56 -15.54 15.64 -3.05 -0.05 -15.58 16 6 N -0.60 -9.33 3.33 -811.80 -2.70 -12.03 16 7 C 0.11 1.67 6.87 86.73 0.60 2.27 16 8 C -0.12 -1.65 6.65 31.78 0.21 -1.44 16 9 C 0.08 1.06 3.34 46.31 0.15 1.21 16 10 H 0.08 0.93 7.87 -2.39 -0.02 0.91 16 11 N -0.67 -14.54 6.02 -488.40 -2.94 -17.48 16 12 C 0.06 1.55 6.05 85.56 0.52 2.06 16 13 C 0.45 18.24 7.82 87.66 0.69 18.92 16 14 O -0.61 -31.27 15.78 -3.06 -0.05 -31.32 16 15 N -0.59 -25.96 5.09 -306.98 -1.56 -27.52 16 16 C -0.33 -18.32 10.16 84.04 0.85 -17.47 16 17 H 0.06 3.77 7.39 -2.91 -0.02 3.75 16 18 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 19 N -0.94 -55.18 13.96 21.66 0.30 -54.87 16 20 Si 0.96 37.10 27.74 68.60 1.90 39.01 16 21 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 22 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 23 H -0.23 -7.16 6.52 99.48 0.65 -6.51 16 24 C 0.09 1.04 6.16 86.85 0.54 1.58 16 25 C 0.47 8.18 2.54 71.98 0.18 8.36 16 26 F -0.19 -3.89 17.02 44.97 0.77 -3.12 16 27 F -0.17 -2.70 16.73 44.97 0.75 -1.95 16 28 F -0.18 -4.08 15.47 44.97 0.70 -3.39 16 29 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.06 0.81 7.92 -2.39 -0.02 0.79 16 31 H 0.10 0.63 7.69 -2.39 -0.02 0.62 16 32 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.35 7.96 8.18 -89.69 -0.73 7.22 16 37 H 0.08 1.53 8.09 -2.39 -0.02 1.51 16 38 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.39 13.91 5.76 -92.71 -0.53 13.38 16 40 H 0.28 15.01 8.31 -92.71 -0.77 14.24 16 41 H 0.11 0.65 6.66 -2.39 -0.02 0.63 16 42 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -80.18 361.80 2.28 -77.90 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: -0.24 Total: 27.29 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 5.40 Total: 23.07 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -6.90 Total: -111.91 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -0.10 Total: -46.90 kcal Atomic # 9 Polarization: -10.67 SS G_CDS: 2.21 Total: -8.46 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 1.90 Total: 39.01 kcal Total: -80.18 2.28 -77.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184900116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.567 kcal (2) G-P(sol) polarization free energy of solvation -80.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds