Wall clock time and date at job start Tue Mar 31 2020 20:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.52483 * 2 1 4 4 C 1.53200 * 109.49604 * 120.08077 * 2 1 3 5 5 N 1.46926 * 108.77269 * 174.58787 * 4 2 1 6 6 C 1.34775 * 120.62939 * 126.41271 * 5 4 2 7 7 O 1.21533 * 120.00005 * 354.79909 * 6 5 4 8 8 C 1.48072 * 120.00338 * 174.79831 * 6 5 4 9 9 C 1.39863 * 120.93050 * 312.93694 * 8 6 5 10 10 C 1.38088 * 119.02088 * 179.77306 * 9 8 6 11 11 N 1.31849 * 120.93696 * 0.50517 * 10 9 8 12 12 C 1.31758 * 122.07370 * 359.74708 * 11 10 9 13 13 C 1.38359 * 120.87006 * 359.97438 * 12 11 10 14 14 Cl 1.73591 * 120.51954 * 180.02562 * 13 12 11 15 15 C 1.46922 * 118.73906 * 306.38666 * 5 4 2 16 16 C 1.53194 * 108.77618 * 53.61325 * 15 5 4 17 17 C 1.53040 * 109.49872 * 239.91777 * 2 1 3 18 18 H 1.09008 * 109.44790 * 298.69541 * 17 2 1 19 19 C 1.52993 * 109.46244 * 58.66270 * 17 2 1 20 20 N 1.46494 * 109.47570 * 185.06781 * 19 17 2 21 21 C 1.36935 * 120.00284 * 180.27225 * 20 19 17 22 22 H 1.07996 * 119.99863 * 359.73245 * 21 20 19 23 23 C 1.38814 * 119.99922 * 179.72463 * 21 20 19 24 24 N 1.31623 * 119.99598 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00315 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47155 * 89.99472 * 25 23 21 27 27 H 1.48498 * 109.47347 * 210.00002 * 25 23 21 28 28 H 1.48506 * 109.46813 * 330.00173 * 25 23 21 29 29 H 1.09008 * 109.47189 * 180.08177 * 1 2 3 30 30 H 1.08999 * 109.47535 * 300.07882 * 1 2 3 31 31 H 1.08999 * 109.47413 * 60.08178 * 1 2 3 32 32 H 1.08996 * 109.58860 * 54.79543 * 4 2 1 33 33 H 1.09001 * 109.70337 * 294.44439 * 4 2 1 34 34 H 1.07998 * 120.49311 * 0.02562 * 9 8 6 35 35 H 1.08002 * 119.53278 * 180.27548 * 10 9 8 36 36 H 1.07992 * 119.56533 * 179.97438 * 12 11 10 37 37 H 1.08993 * 109.58717 * 293.82474 * 15 5 4 38 38 H 1.09004 * 109.70223 * 173.46632 * 15 5 4 39 39 H 1.08999 * 109.49766 * 185.41294 * 16 15 5 40 40 H 1.09003 * 109.52042 * 65.32855 * 16 15 5 41 41 H 1.09000 * 109.46892 * 65.06771 * 19 17 2 42 42 H 1.09000 * 109.47053 * 305.07111 * 19 17 2 43 43 H 0.97004 * 119.99441 * 0.02562 * 20 19 17 44 44 H 0.97005 * 119.99376 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2497 5 7 3.5046 -0.8291 1.1696 6 6 4.2810 -0.3864 2.1783 7 8 3.7795 0.1905 3.1231 8 6 5.7452 -0.6028 2.1356 9 6 6.2777 -1.8544 1.8097 10 6 7.6493 -2.0109 1.7769 11 7 8.4533 -1.0041 2.0569 12 6 7.9952 0.1899 2.3736 13 6 6.6349 0.4377 2.4252 14 17 6.0413 2.0146 2.8429 15 6 4.1053 -1.4267 -0.0306 16 6 3.5709 -0.6951 -1.2659 17 6 2.0408 -0.7231 -1.2483 18 1 1.6967 -1.7574 -1.2350 19 6 1.5038 -0.0234 -2.4984 20 7 1.8918 -0.7841 -3.6887 21 6 1.5253 -0.3436 -4.9324 22 1 0.9465 0.5623 -5.0355 23 6 1.8979 -1.0614 -6.0606 24 7 1.5460 -0.6377 -7.2560 25 14 2.8986 -2.6286 -5.8822 26 1 1.9816 -3.7892 -5.7511 27 1 3.7556 -2.8080 -7.0816 28 1 3.7541 -2.5346 -4.6720 29 1 -0.3634 -1.0277 0.0015 30 1 -0.3634 0.5150 0.8892 31 1 -0.3634 0.5125 -0.8907 32 1 1.6052 -1.7216 1.2982 33 1 1.7636 -0.1601 2.1403 34 1 5.6259 -2.6851 1.5831 35 1 8.0694 -2.9727 1.5220 36 1 8.6905 0.9857 2.5960 37 1 3.8375 -2.4818 -0.0866 38 1 5.1898 -1.3267 0.0125 39 1 3.9335 -1.1898 -2.1670 40 1 3.9159 0.3388 -1.2545 41 1 1.9195 0.9825 -2.5585 42 1 0.4168 0.0355 -2.4431 43 1 2.4114 -1.5979 -3.5960 44 1 1.8067 -1.1391 -8.0444 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185206731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:32 Heat of formation + Delta-G solvation = 10.589009 kcal Electronic energy + Delta-G solvation = -27179.233926 eV Core-core repulsion = 23350.803958 eV Total energy + Delta-G solvation = -3828.429969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.27708 -39.90478 -38.18934 -36.96774 -35.30711 -34.04992 -32.83977 -32.09028 -31.57863 -30.76708 -27.41586 -27.17402 -25.06976 -23.99896 -23.50124 -22.59909 -21.35636 -20.53561 -19.68365 -18.05544 -17.58057 -17.28695 -16.85577 -16.44187 -15.62881 -15.30678 -14.95360 -14.71810 -14.53756 -14.40650 -14.24651 -14.09755 -13.53817 -13.41063 -13.10421 -13.01543 -12.62784 -12.47082 -12.37653 -12.08737 -12.01168 -11.80741 -11.53933 -11.38278 -11.06720 -10.94238 -10.65823 -10.58176 -10.52860 -10.24253 -10.18206 -10.11525 -9.81538 -9.61680 -9.44282 -8.93987 -8.83198 -7.25513 -5.80056 -3.15448 0.21752 0.39638 1.60835 2.28857 2.60070 3.14941 3.30413 3.33833 3.40712 3.85198 3.88377 4.15720 4.28243 4.54648 4.57910 4.62881 4.70792 4.78655 4.87991 5.00625 5.07796 5.11998 5.22300 5.28573 5.34080 5.49263 5.53858 5.60540 5.64579 5.69673 5.71772 5.83498 5.87666 6.04269 6.10973 6.13994 6.26008 6.32216 6.36249 6.68689 6.76102 7.03357 7.26946 7.75115 7.96564 8.39043 9.18063 9.90201 10.10049 11.38586 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.013044 B = 0.003277 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.096453 B = 8541.517556 C = 9632.147075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 H 0.076 0.924 4 C 0.118 3.882 5 N -0.597 5.597 6 C 0.558 3.442 7 O -0.515 6.515 8 C -0.071 4.071 9 C -0.132 4.132 10 C 0.101 3.899 11 N -0.457 5.457 12 C 0.114 3.886 13 C -0.051 4.051 14 Cl -0.028 7.028 15 C 0.098 3.902 16 C -0.128 4.128 17 C -0.093 4.093 18 H 0.073 0.927 19 C 0.161 3.839 20 N -0.755 5.755 21 C -0.243 4.243 22 H 0.089 0.911 23 C 0.004 3.996 24 N -0.934 5.934 25 Si 0.885 3.115 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.278 1.278 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.151 0.849 35 H 0.171 0.829 36 H 0.172 0.828 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.025 0.975 42 H 0.034 0.966 43 H 0.359 0.641 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.818 -2.339 22.680 24.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.094 0.906 4 C -0.003 4.003 5 N -0.330 5.330 6 C 0.344 3.656 7 O -0.391 6.391 8 C -0.083 4.083 9 C -0.153 4.153 10 C -0.055 4.055 11 N -0.166 5.166 12 C -0.044 4.044 13 C -0.081 4.081 14 Cl 0.002 6.998 15 C -0.025 4.025 16 C -0.166 4.166 17 C -0.112 4.112 18 H 0.091 0.909 19 C 0.034 3.966 20 N -0.401 5.401 21 C -0.373 4.373 22 H 0.107 0.893 23 C -0.192 4.192 24 N -0.583 5.583 25 Si 0.715 3.285 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.205 1.205 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.169 0.831 35 H 0.188 0.812 36 H 0.189 0.811 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.052 0.948 43 H 0.192 0.808 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.263 -1.884 23.013 25.268 hybrid contribution -0.180 -0.934 -0.175 0.967 sum 10.083 -2.818 22.838 25.123 Atomic orbital electron populations 1.21838 0.94025 1.02278 1.02389 1.21448 0.96377 1.00090 0.93713 0.90575 1.21794 0.77670 1.01211 0.99650 1.48021 1.07290 1.60021 1.17620 1.18015 0.85342 0.79112 0.83096 1.90826 1.74113 1.40352 1.33807 1.20302 0.94491 0.93972 0.99550 1.22456 0.97391 0.96671 0.98743 1.22907 0.89510 0.98293 0.94818 1.67716 1.39736 0.99593 1.09535 1.22865 0.91136 0.95172 0.95244 1.22211 0.94643 0.88961 1.02332 1.98432 1.88312 1.22010 1.91093 1.22105 0.98369 0.97608 0.84401 1.21966 0.96308 1.01530 0.96827 1.21405 0.94474 1.00307 0.95021 0.90899 1.20733 0.97296 0.94105 0.84501 1.42721 1.66292 1.28473 1.02607 1.19064 1.28406 1.07973 0.81886 0.89282 1.24678 1.00712 0.98709 0.95107 1.69706 1.50942 1.40582 0.97022 0.86548 0.80391 0.84733 0.76794 1.21097 1.21738 1.20455 0.92453 0.92796 0.91066 0.91069 0.88816 0.83085 0.81195 0.81092 0.90710 0.89803 0.89699 0.91273 0.95715 0.94847 0.80785 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.82 37.16 0.33 -1.27 16 2 C -0.10 -1.13 2.41 -90.50 -0.22 -1.35 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.28 5.73 -3.71 -0.02 1.25 16 5 N -0.60 -6.58 2.97 -173.79 -0.52 -7.10 16 6 C 0.56 6.87 6.89 -12.23 -0.08 6.78 16 7 O -0.52 -7.77 15.27 5.34 0.08 -7.69 16 8 C -0.07 -0.75 4.91 -104.62 -0.51 -1.26 16 9 C -0.13 -1.03 7.62 -39.03 -0.30 -1.33 16 10 C 0.10 0.74 11.17 -17.60 -0.20 0.55 16 11 N -0.46 -4.20 10.33 -13.27 -0.14 -4.34 16 12 C 0.11 1.02 10.99 -17.54 -0.19 0.83 16 13 C -0.05 -0.54 6.37 -38.90 -0.25 -0.78 16 14 Cl -0.03 -0.31 27.29 -51.86 -1.42 -1.72 16 15 C 0.10 0.97 5.24 -3.71 -0.02 0.95 16 16 C -0.13 -1.65 5.25 -26.61 -0.14 -1.79 16 17 C -0.09 -1.27 1.73 -90.58 -0.16 -1.43 16 18 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 19 C 0.16 2.91 5.41 -4.05 -0.02 2.89 16 20 N -0.76 -17.11 5.12 -59.92 -0.31 -17.41 16 21 C -0.24 -6.75 10.47 -15.06 -0.16 -6.91 16 22 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 23 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 24 N -0.93 -29.06 13.97 55.49 0.78 -28.29 16 25 Si 0.88 21.43 27.74 -169.99 -4.71 16.71 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 29 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.86 6.29 -51.93 -0.33 0.53 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.08 6.99 -51.93 -0.36 0.72 16 34 H 0.15 0.86 7.27 -52.49 -0.38 0.48 16 35 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16 36 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.76 5.06 -51.93 -0.26 0.49 16 39 H 0.08 1.22 7.15 -51.93 -0.37 0.85 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.03 0.62 6.14 -51.93 -0.32 0.30 16 43 H 0.36 7.82 4.71 -40.82 -0.19 7.63 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 363.17 15.07 5.47 5.47 Total: -1.00 -33.42 363.17 -8.83 -42.26 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.04 Total: 4.97 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -2.04 Total: -2.86 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.19 Total: -57.13 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.08 Total: -7.69 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.71 Total: 16.71 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.42 Total: -1.72 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.42 -8.83 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185206731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.845 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds