Wall clock time and date at job start Tue Mar 31 2020 20:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.52483 * 2 1 4 4 C 1.53200 * 109.49604 * 120.08077 * 2 1 3 5 5 N 1.46926 * 108.77269 * 174.58787 * 4 2 1 6 6 C 1.34775 * 120.62939 * 126.41271 * 5 4 2 7 7 O 1.21533 * 120.00005 * 354.79909 * 6 5 4 8 8 C 1.48072 * 120.00338 * 174.79831 * 6 5 4 9 9 C 1.39863 * 120.93050 * 312.93694 * 8 6 5 10 10 C 1.38088 * 119.02088 * 179.77306 * 9 8 6 11 11 N 1.31849 * 120.93696 * 0.50517 * 10 9 8 12 12 C 1.31758 * 122.07370 * 359.74708 * 11 10 9 13 13 C 1.38359 * 120.87006 * 359.97438 * 12 11 10 14 14 Cl 1.73591 * 120.51954 * 180.02562 * 13 12 11 15 15 C 1.46922 * 118.73906 * 306.38666 * 5 4 2 16 16 C 1.53194 * 108.77618 * 53.61325 * 15 5 4 17 17 C 1.53040 * 109.49872 * 239.91777 * 2 1 3 18 18 H 1.09008 * 109.44790 * 298.69541 * 17 2 1 19 19 C 1.52993 * 109.46244 * 58.66270 * 17 2 1 20 20 N 1.46494 * 109.47570 * 185.06781 * 19 17 2 21 21 C 1.36935 * 120.00284 * 180.27225 * 20 19 17 22 22 H 1.07996 * 119.99863 * 359.73245 * 21 20 19 23 23 C 1.38814 * 119.99922 * 179.72463 * 21 20 19 24 24 N 1.31623 * 119.99598 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00315 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47155 * 89.99472 * 25 23 21 27 27 H 1.48498 * 109.47347 * 210.00002 * 25 23 21 28 28 H 1.48506 * 109.46813 * 330.00173 * 25 23 21 29 29 H 1.09008 * 109.47189 * 180.08177 * 1 2 3 30 30 H 1.08999 * 109.47535 * 300.07882 * 1 2 3 31 31 H 1.08999 * 109.47413 * 60.08178 * 1 2 3 32 32 H 1.08996 * 109.58860 * 54.79543 * 4 2 1 33 33 H 1.09001 * 109.70337 * 294.44439 * 4 2 1 34 34 H 1.07998 * 120.49311 * 0.02562 * 9 8 6 35 35 H 1.08002 * 119.53278 * 180.27548 * 10 9 8 36 36 H 1.07992 * 119.56533 * 179.97438 * 12 11 10 37 37 H 1.08993 * 109.58717 * 293.82474 * 15 5 4 38 38 H 1.09004 * 109.70223 * 173.46632 * 15 5 4 39 39 H 1.08999 * 109.49766 * 185.41294 * 16 15 5 40 40 H 1.09003 * 109.52042 * 65.32855 * 16 15 5 41 41 H 1.09000 * 109.46892 * 65.06771 * 19 17 2 42 42 H 1.09000 * 109.47053 * 305.07111 * 19 17 2 43 43 H 0.97004 * 119.99441 * 0.02562 * 20 19 17 44 44 H 0.97005 * 119.99376 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2497 5 7 3.5046 -0.8291 1.1696 6 6 4.2810 -0.3864 2.1783 7 8 3.7795 0.1905 3.1231 8 6 5.7452 -0.6028 2.1356 9 6 6.2777 -1.8544 1.8097 10 6 7.6493 -2.0109 1.7769 11 7 8.4533 -1.0041 2.0569 12 6 7.9952 0.1899 2.3736 13 6 6.6349 0.4377 2.4252 14 17 6.0413 2.0146 2.8429 15 6 4.1053 -1.4267 -0.0306 16 6 3.5709 -0.6951 -1.2659 17 6 2.0408 -0.7231 -1.2483 18 1 1.6967 -1.7574 -1.2350 19 6 1.5038 -0.0234 -2.4984 20 7 1.8918 -0.7841 -3.6887 21 6 1.5253 -0.3436 -4.9324 22 1 0.9465 0.5623 -5.0355 23 6 1.8979 -1.0614 -6.0606 24 7 1.5460 -0.6377 -7.2560 25 14 2.8986 -2.6286 -5.8822 26 1 1.9816 -3.7892 -5.7511 27 1 3.7556 -2.8080 -7.0816 28 1 3.7541 -2.5346 -4.6720 29 1 -0.3634 -1.0277 0.0015 30 1 -0.3634 0.5150 0.8892 31 1 -0.3634 0.5125 -0.8907 32 1 1.6052 -1.7216 1.2982 33 1 1.7636 -0.1601 2.1403 34 1 5.6259 -2.6851 1.5831 35 1 8.0694 -2.9727 1.5220 36 1 8.6905 0.9857 2.5960 37 1 3.8375 -2.4818 -0.0866 38 1 5.1898 -1.3267 0.0125 39 1 3.9335 -1.1898 -2.1670 40 1 3.9159 0.3388 -1.2545 41 1 1.9195 0.9825 -2.5585 42 1 0.4168 0.0355 -2.4431 43 1 2.4114 -1.5979 -3.5960 44 1 1.8067 -1.1391 -8.0444 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185206731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:29 Heat of formation + Delta-G solvation = -11.017167 kcal Electronic energy + Delta-G solvation = -27180.170840 eV Core-core repulsion = 23350.803958 eV Total energy + Delta-G solvation = -3829.366883 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -42.05176 -40.71433 -39.23855 -37.74360 -36.73808 -35.26937 -33.91295 -33.31952 -32.38064 -32.20522 -28.76791 -28.04983 -26.06810 -24.93156 -24.62191 -23.72752 -22.72217 -21.52839 -20.66902 -19.63919 -18.76005 -18.03552 -17.58240 -17.27433 -16.68591 -16.36400 -16.19627 -15.91557 -15.62998 -15.31081 -15.16730 -15.08460 -14.85711 -14.59191 -14.43641 -14.10359 -13.99216 -13.28779 -13.26274 -13.15297 -13.10317 -12.95288 -12.86078 -12.69154 -12.32779 -12.16688 -12.00740 -11.84750 -11.64781 -11.61803 -11.43960 -11.26230 -10.96658 -10.87789 -10.58005 -10.10284 -9.76041 -9.26725 -8.01345 -5.35221 -0.48864 -0.21266 0.87236 1.37915 1.41765 1.44486 1.51746 1.78641 2.50723 2.50872 3.07692 3.29983 3.34332 3.51779 3.53532 3.64216 3.69764 3.78474 3.92697 4.01579 4.06725 4.23557 4.33261 4.42073 4.46623 4.53207 4.58542 4.65564 4.69875 4.73692 4.77282 4.80745 4.96291 5.05732 5.07813 5.17628 5.23177 5.31238 5.33818 5.44535 5.55537 5.76957 6.16364 6.22284 6.66076 6.86974 7.09890 7.85016 8.06519 9.20566 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.013044 B = 0.003277 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.096453 B = 8541.517556 C = 9632.147075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.058 0.942 4 C 0.122 3.878 5 N -0.595 5.595 6 C 0.557 3.443 7 O -0.551 6.551 8 C -0.089 4.089 9 C -0.123 4.123 10 C 0.108 3.892 11 N -0.472 5.472 12 C 0.114 3.886 13 C -0.068 4.068 14 Cl -0.047 7.047 15 C 0.103 3.897 16 C -0.127 4.127 17 C -0.082 4.082 18 H 0.087 0.913 19 C 0.158 3.842 20 N -0.753 5.753 21 C -0.237 4.237 22 H 0.049 0.951 23 C -0.067 4.067 24 N -0.988 5.988 25 Si 0.959 3.041 26 H -0.276 1.276 27 H -0.299 1.299 28 H -0.241 1.241 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.179 0.821 35 H 0.206 0.794 36 H 0.187 0.813 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.009 0.991 42 H 0.031 0.969 43 H 0.368 0.632 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.403 -5.562 24.385 27.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.077 0.923 4 C 0.000 4.000 5 N -0.326 5.326 6 C 0.344 3.656 7 O -0.429 6.429 8 C -0.101 4.101 9 C -0.143 4.143 10 C -0.048 4.048 11 N -0.181 5.181 12 C -0.044 4.044 13 C -0.098 4.098 14 Cl -0.018 7.018 15 C -0.018 4.018 16 C -0.165 4.165 17 C -0.101 4.101 18 H 0.105 0.895 19 C 0.032 3.968 20 N -0.399 5.399 21 C -0.368 4.368 22 H 0.067 0.933 23 C -0.258 4.258 24 N -0.638 5.638 25 Si 0.785 3.215 26 H -0.202 1.202 27 H -0.226 1.226 28 H -0.165 1.165 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.196 0.804 35 H 0.223 0.777 36 H 0.204 0.796 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.027 0.973 42 H 0.049 0.951 43 H 0.202 0.798 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.853 -5.100 24.766 27.926 hybrid contribution -0.728 0.158 -0.728 1.042 sum 11.124 -4.942 24.039 26.945 Atomic orbital electron populations 1.21808 0.93320 1.02988 1.02175 1.21343 0.96923 0.99095 0.93455 0.92302 1.21774 0.77771 1.02116 0.98294 1.48078 1.07324 1.59574 1.17625 1.18304 0.86144 0.78375 0.82759 1.90805 1.74928 1.41937 1.35267 1.20339 0.93398 0.95297 1.01061 1.22754 0.98011 0.96076 0.97433 1.23528 0.89294 0.99038 0.92988 1.67800 1.40367 0.99952 1.10020 1.23099 0.90780 0.95770 0.94748 1.22353 0.95355 0.88404 1.03710 1.98419 1.88567 1.23369 1.91405 1.22178 0.99006 0.98469 0.82193 1.21911 0.95515 1.00997 0.98109 1.21302 0.95123 1.00492 0.93169 0.89470 1.20868 0.97234 0.93512 0.85143 1.42650 1.66225 1.29052 1.02002 1.19020 1.27100 1.06454 0.84256 0.93294 1.25599 1.02682 1.03086 0.94462 1.69914 1.53099 1.42688 0.98116 0.85361 0.78891 0.79438 0.77826 1.20187 1.22563 1.16516 0.91251 0.91466 0.92859 0.88716 0.89638 0.80384 0.77701 0.79603 0.87693 0.88479 0.90657 0.92973 0.97335 0.95098 0.79778 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.82 71.98 0.63 -2.31 16 2 C -0.09 -1.93 2.41 -10.71 -0.03 -1.96 16 3 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 4 C 0.12 2.33 5.73 86.37 0.49 2.82 16 5 N -0.59 -11.54 2.97 -822.05 -2.44 -13.98 16 6 C 0.56 12.78 6.89 86.85 0.60 13.38 16 7 O -0.55 -16.33 15.27 -3.82 -0.06 -16.39 16 8 C -0.09 -1.68 4.91 -19.86 -0.10 -1.78 16 9 C -0.12 -1.44 7.62 22.63 0.17 -1.27 16 10 C 0.11 1.16 11.17 84.65 0.95 2.10 16 11 N -0.47 -7.40 10.33 -195.91 -2.02 -9.42 16 12 C 0.11 1.85 10.99 84.73 0.93 2.78 16 13 C -0.07 -1.35 6.37 22.71 0.14 -1.21 16 14 Cl -0.05 -1.05 27.29 -2.72 -0.07 -1.12 16 15 C 0.10 1.67 5.24 86.36 0.45 2.12 16 16 C -0.13 -2.97 5.25 30.67 0.16 -2.81 16 17 C -0.08 -2.07 1.73 -10.77 -0.02 -2.09 16 18 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 19 C 0.16 5.70 5.41 86.38 0.47 6.17 16 20 N -0.75 -33.46 5.12 -343.48 -1.76 -35.22 16 21 C -0.24 -13.41 10.47 84.03 0.88 -12.53 16 22 H 0.05 3.09 8.06 -2.91 -0.02 3.06 16 23 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 24 N -0.99 -63.08 13.97 21.65 0.30 -62.78 16 25 Si 0.96 43.34 27.74 68.60 1.90 45.24 16 26 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 27 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.24 -9.32 6.52 99.48 0.65 -8.67 16 29 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.27 6.29 -2.39 -0.02 1.25 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 1.84 6.99 -2.39 -0.02 1.82 16 34 H 0.18 1.07 7.27 -2.91 -0.02 1.05 16 35 H 0.21 0.67 8.06 -2.91 -0.02 0.64 16 36 H 0.19 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.10 1.36 5.06 -2.39 -0.01 1.35 16 39 H 0.07 1.94 7.15 -2.39 -0.02 1.92 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.03 1.15 6.14 -2.39 -0.01 1.13 16 43 H 0.37 15.02 4.71 -92.71 -0.44 14.58 16 44 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 Total: -1.00 -75.52 363.17 2.59 -72.94 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.53 Total: 20.75 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 6.21 Total: -0.01 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -5.92 Total: -121.40 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.06 Total: -16.39 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.90 Total: 45.24 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.07 Total: -1.12 kcal Total: -75.52 2.59 -72.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185206731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.922 kcal (2) G-P(sol) polarization free energy of solvation -75.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds