Wall clock time and date at job start Tue Mar 31 2020 20:34:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08996 * 109.52483 * 2 1
4 4 C 1.53200 * 109.49604 * 120.08077 * 2 1 3
5 5 N 1.46926 * 108.77269 * 174.58787 * 4 2 1
6 6 C 1.34775 * 120.62939 * 126.41271 * 5 4 2
7 7 O 1.21533 * 120.00005 * 354.79909 * 6 5 4
8 8 C 1.48072 * 120.00338 * 174.79831 * 6 5 4
9 9 C 1.39863 * 120.93050 * 312.93694 * 8 6 5
10 10 C 1.38088 * 119.02088 * 179.77306 * 9 8 6
11 11 N 1.31849 * 120.93696 * 0.50517 * 10 9 8
12 12 C 1.31758 * 122.07370 * 359.74708 * 11 10 9
13 13 C 1.38359 * 120.87006 * 359.97438 * 12 11 10
14 14 Cl 1.73591 * 120.51954 * 180.02562 * 13 12 11
15 15 C 1.46922 * 118.73906 * 306.38666 * 5 4 2
16 16 C 1.53194 * 108.77618 * 53.61325 * 15 5 4
17 17 C 1.53040 * 109.49872 * 239.91777 * 2 1 3
18 18 H 1.09008 * 109.44790 * 298.69541 * 17 2 1
19 19 C 1.52993 * 109.46244 * 58.66270 * 17 2 1
20 20 N 1.46494 * 109.47570 * 185.06781 * 19 17 2
21 21 C 1.36935 * 120.00284 * 180.27225 * 20 19 17
22 22 H 1.07996 * 119.99863 * 359.73245 * 21 20 19
23 23 C 1.38814 * 119.99922 * 179.72463 * 21 20 19
24 24 N 1.31623 * 119.99598 * 180.02562 * 23 21 20
25 25 Si 1.86800 * 120.00315 * 0.02562 * 23 21 20
26 26 H 1.48494 * 109.47155 * 89.99472 * 25 23 21
27 27 H 1.48498 * 109.47347 * 210.00002 * 25 23 21
28 28 H 1.48506 * 109.46813 * 330.00173 * 25 23 21
29 29 H 1.09008 * 109.47189 * 180.08177 * 1 2 3
30 30 H 1.08999 * 109.47535 * 300.07882 * 1 2 3
31 31 H 1.08999 * 109.47413 * 60.08178 * 1 2 3
32 32 H 1.08996 * 109.58860 * 54.79543 * 4 2 1
33 33 H 1.09001 * 109.70337 * 294.44439 * 4 2 1
34 34 H 1.07998 * 120.49311 * 0.02562 * 9 8 6
35 35 H 1.08002 * 119.53278 * 180.27548 * 10 9 8
36 36 H 1.07992 * 119.56533 * 179.97438 * 12 11 10
37 37 H 1.08993 * 109.58717 * 293.82474 * 15 5 4
38 38 H 1.09004 * 109.70223 * 173.46632 * 15 5 4
39 39 H 1.08999 * 109.49766 * 185.41294 * 16 15 5
40 40 H 1.09003 * 109.52042 * 65.32855 * 16 15 5
41 41 H 1.09000 * 109.46892 * 65.06771 * 19 17 2
42 42 H 1.09000 * 109.47053 * 305.07111 * 19 17 2
43 43 H 0.97004 * 119.99441 * 0.02562 * 20 19 17
44 44 H 0.97005 * 119.99376 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8943 1.0273 0.0000
4 6 2.0413 -0.7238 1.2497
5 7 3.5046 -0.8291 1.1696
6 6 4.2810 -0.3864 2.1783
7 8 3.7795 0.1905 3.1231
8 6 5.7452 -0.6028 2.1356
9 6 6.2777 -1.8544 1.8097
10 6 7.6493 -2.0109 1.7769
11 7 8.4533 -1.0041 2.0569
12 6 7.9952 0.1899 2.3736
13 6 6.6349 0.4377 2.4252
14 17 6.0413 2.0146 2.8429
15 6 4.1053 -1.4267 -0.0306
16 6 3.5709 -0.6951 -1.2659
17 6 2.0408 -0.7231 -1.2483
18 1 1.6967 -1.7574 -1.2350
19 6 1.5038 -0.0234 -2.4984
20 7 1.8918 -0.7841 -3.6887
21 6 1.5253 -0.3436 -4.9324
22 1 0.9465 0.5623 -5.0355
23 6 1.8979 -1.0614 -6.0606
24 7 1.5460 -0.6377 -7.2560
25 14 2.8986 -2.6286 -5.8822
26 1 1.9816 -3.7892 -5.7511
27 1 3.7556 -2.8080 -7.0816
28 1 3.7541 -2.5346 -4.6720
29 1 -0.3634 -1.0277 0.0015
30 1 -0.3634 0.5150 0.8892
31 1 -0.3634 0.5125 -0.8907
32 1 1.6052 -1.7216 1.2982
33 1 1.7636 -0.1601 2.1403
34 1 5.6259 -2.6851 1.5831
35 1 8.0694 -2.9727 1.5220
36 1 8.6905 0.9857 2.5960
37 1 3.8375 -2.4818 -0.0866
38 1 5.1898 -1.3267 0.0125
39 1 3.9335 -1.1898 -2.1670
40 1 3.9159 0.3388 -1.2545
41 1 1.9195 0.9825 -2.5585
42 1 0.4168 0.0355 -2.4431
43 1 2.4114 -1.5979 -3.5960
44 1 1.8067 -1.1391 -8.0444
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001185206731.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:34:29
Heat of formation + Delta-G solvation = -11.017167 kcal
Electronic energy + Delta-G solvation = -27180.170840 eV
Core-core repulsion = 23350.803958 eV
Total energy + Delta-G solvation = -3829.366883 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 337.130 amu
Computer time = 1.85 seconds
Orbital eigenvalues (eV)
-42.05176 -40.71433 -39.23855 -37.74360 -36.73808 -35.26937 -33.91295 -33.31952
-32.38064 -32.20522 -28.76791 -28.04983 -26.06810 -24.93156 -24.62191 -23.72752
-22.72217 -21.52839 -20.66902 -19.63919 -18.76005 -18.03552 -17.58240 -17.27433
-16.68591 -16.36400 -16.19627 -15.91557 -15.62998 -15.31081 -15.16730 -15.08460
-14.85711 -14.59191 -14.43641 -14.10359 -13.99216 -13.28779 -13.26274 -13.15297
-13.10317 -12.95288 -12.86078 -12.69154 -12.32779 -12.16688 -12.00740 -11.84750
-11.64781 -11.61803 -11.43960 -11.26230 -10.96658 -10.87789 -10.58005 -10.10284
-9.76041 -9.26725 -8.01345 -5.35221 -0.48864 -0.21266 0.87236 1.37915
1.41765 1.44486 1.51746 1.78641 2.50723 2.50872 3.07692 3.29983
3.34332 3.51779 3.53532 3.64216 3.69764 3.78474 3.92697 4.01579
4.06725 4.23557 4.33261 4.42073 4.46623 4.53207 4.58542 4.65564
4.69875 4.73692 4.77282 4.80745 4.96291 5.05732 5.07813 5.17628
5.23177 5.31238 5.33818 5.44535 5.55537 5.76957 6.16364 6.22284
6.66076 6.86974 7.09890 7.85016 8.06519 9.20566
Molecular weight = 337.13amu
Principal moments of inertia in cm(-1)
A = 0.013044 B = 0.003277 C = 0.002906
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2146.096453 B = 8541.517556 C = 9632.147075
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.088 4.088
3 H 0.058 0.942
4 C 0.122 3.878
5 N -0.595 5.595
6 C 0.557 3.443
7 O -0.551 6.551
8 C -0.089 4.089
9 C -0.123 4.123
10 C 0.108 3.892
11 N -0.472 5.472
12 C 0.114 3.886
13 C -0.068 4.068
14 Cl -0.047 7.047
15 C 0.103 3.897
16 C -0.127 4.127
17 C -0.082 4.082
18 H 0.087 0.913
19 C 0.158 3.842
20 N -0.753 5.753
21 C -0.237 4.237
22 H 0.049 0.951
23 C -0.067 4.067
24 N -0.988 5.988
25 Si 0.959 3.041
26 H -0.276 1.276
27 H -0.299 1.299
28 H -0.241 1.241
29 H 0.068 0.932
30 H 0.066 0.934
31 H 0.052 0.948
32 H 0.095 0.905
33 H 0.085 0.915
34 H 0.179 0.821
35 H 0.206 0.794
36 H 0.187 0.813
37 H 0.105 0.895
38 H 0.097 0.903
39 H 0.075 0.925
40 H 0.051 0.949
41 H 0.009 0.991
42 H 0.031 0.969
43 H 0.368 0.632
44 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.403 -5.562 24.385 27.488
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.108 4.108
3 H 0.077 0.923
4 C 0.000 4.000
5 N -0.326 5.326
6 C 0.344 3.656
7 O -0.429 6.429
8 C -0.101 4.101
9 C -0.143 4.143
10 C -0.048 4.048
11 N -0.181 5.181
12 C -0.044 4.044
13 C -0.098 4.098
14 Cl -0.018 7.018
15 C -0.018 4.018
16 C -0.165 4.165
17 C -0.101 4.101
18 H 0.105 0.895
19 C 0.032 3.968
20 N -0.399 5.399
21 C -0.368 4.368
22 H 0.067 0.933
23 C -0.258 4.258
24 N -0.638 5.638
25 Si 0.785 3.215
26 H -0.202 1.202
27 H -0.226 1.226
28 H -0.165 1.165
29 H 0.087 0.913
30 H 0.085 0.915
31 H 0.071 0.929
32 H 0.113 0.887
33 H 0.104 0.896
34 H 0.196 0.804
35 H 0.223 0.777
36 H 0.204 0.796
37 H 0.123 0.877
38 H 0.115 0.885
39 H 0.093 0.907
40 H 0.070 0.930
41 H 0.027 0.973
42 H 0.049 0.951
43 H 0.202 0.798
44 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 11.853 -5.100 24.766 27.926
hybrid contribution -0.728 0.158 -0.728 1.042
sum 11.124 -4.942 24.039 26.945
Atomic orbital electron populations
1.21808 0.93320 1.02988 1.02175 1.21343 0.96923 0.99095 0.93455
0.92302 1.21774 0.77771 1.02116 0.98294 1.48078 1.07324 1.59574
1.17625 1.18304 0.86144 0.78375 0.82759 1.90805 1.74928 1.41937
1.35267 1.20339 0.93398 0.95297 1.01061 1.22754 0.98011 0.96076
0.97433 1.23528 0.89294 0.99038 0.92988 1.67800 1.40367 0.99952
1.10020 1.23099 0.90780 0.95770 0.94748 1.22353 0.95355 0.88404
1.03710 1.98419 1.88567 1.23369 1.91405 1.22178 0.99006 0.98469
0.82193 1.21911 0.95515 1.00997 0.98109 1.21302 0.95123 1.00492
0.93169 0.89470 1.20868 0.97234 0.93512 0.85143 1.42650 1.66225
1.29052 1.02002 1.19020 1.27100 1.06454 0.84256 0.93294 1.25599
1.02682 1.03086 0.94462 1.69914 1.53099 1.42688 0.98116 0.85361
0.78891 0.79438 0.77826 1.20187 1.22563 1.16516 0.91251 0.91466
0.92859 0.88716 0.89638 0.80384 0.77701 0.79603 0.87693 0.88479
0.90657 0.92973 0.97335 0.95098 0.79778 0.93371
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.94 8.82 71.98 0.63 -2.31 16
2 C -0.09 -1.93 2.41 -10.71 -0.03 -1.96 16
3 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16
4 C 0.12 2.33 5.73 86.37 0.49 2.82 16
5 N -0.59 -11.54 2.97 -822.05 -2.44 -13.98 16
6 C 0.56 12.78 6.89 86.85 0.60 13.38 16
7 O -0.55 -16.33 15.27 -3.82 -0.06 -16.39 16
8 C -0.09 -1.68 4.91 -19.86 -0.10 -1.78 16
9 C -0.12 -1.44 7.62 22.63 0.17 -1.27 16
10 C 0.11 1.16 11.17 84.65 0.95 2.10 16
11 N -0.47 -7.40 10.33 -195.91 -2.02 -9.42 16
12 C 0.11 1.85 10.99 84.73 0.93 2.78 16
13 C -0.07 -1.35 6.37 22.71 0.14 -1.21 16
14 Cl -0.05 -1.05 27.29 -2.72 -0.07 -1.12 16
15 C 0.10 1.67 5.24 86.36 0.45 2.12 16
16 C -0.13 -2.97 5.25 30.67 0.16 -2.81 16
17 C -0.08 -2.07 1.73 -10.77 -0.02 -2.09 16
18 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16
19 C 0.16 5.70 5.41 86.38 0.47 6.17 16
20 N -0.75 -33.46 5.12 -343.48 -1.76 -35.22 16
21 C -0.24 -13.41 10.47 84.03 0.88 -12.53 16
22 H 0.05 3.09 8.06 -2.91 -0.02 3.06 16
23 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16
24 N -0.99 -63.08 13.97 21.65 0.30 -62.78 16
25 Si 0.96 43.34 27.74 68.60 1.90 45.24 16
26 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16
27 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16
28 H -0.24 -9.32 6.52 99.48 0.65 -8.67 16
29 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16
30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
31 H 0.05 1.27 6.29 -2.39 -0.02 1.25 16
32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16
33 H 0.09 1.84 6.99 -2.39 -0.02 1.82 16
34 H 0.18 1.07 7.27 -2.91 -0.02 1.05 16
35 H 0.21 0.67 8.06 -2.91 -0.02 0.64 16
36 H 0.19 2.22 8.06 -2.91 -0.02 2.20 16
37 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16
38 H 0.10 1.36 5.06 -2.39 -0.01 1.35 16
39 H 0.07 1.94 7.15 -2.39 -0.02 1.92 16
40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16
41 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16
42 H 0.03 1.15 6.14 -2.39 -0.01 1.13 16
43 H 0.37 15.02 4.71 -92.71 -0.44 14.58 16
44 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16
Total: -1.00 -75.52 363.17 2.59 -72.94
By element:
Atomic # 1 Polarization: 20.22 SS G_CDS: 0.53 Total: 20.75 kcal
Atomic # 6 Polarization: -6.22 SS G_CDS: 6.21 Total: -0.01 kcal
Atomic # 7 Polarization: -115.48 SS G_CDS: -5.92 Total: -121.40 kcal
Atomic # 8 Polarization: -16.33 SS G_CDS: -0.06 Total: -16.39 kcal
Atomic # 14 Polarization: 43.34 SS G_CDS: 1.90 Total: 45.24 kcal
Atomic # 17 Polarization: -1.05 SS G_CDS: -0.07 Total: -1.12 kcal
Total: -75.52 2.59 -72.94 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001185206731.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.922 kcal
(2) G-P(sol) polarization free energy of solvation -75.525 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.603 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.939 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.017 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.86 seconds