Wall clock time and date at job start Tue Mar 31 2020 20:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.49359 * 2 1 4 4 C 1.53190 * 109.49819 * 239.93788 * 2 1 3 5 5 N 1.46933 * 108.77042 * 294.68201 * 4 2 1 6 6 C 1.34782 * 120.62970 * 126.36958 * 5 4 2 7 7 O 1.21525 * 119.99615 * 3.96249 * 6 5 4 8 8 C 1.48071 * 120.00050 * 183.95500 * 6 5 4 9 9 C 1.39862 * 120.93475 * 306.88171 * 8 6 5 10 10 C 1.38089 * 119.02073 * 180.27238 * 9 8 6 11 11 N 1.31845 * 120.93780 * 359.97438 * 10 9 8 12 12 C 1.31755 * 122.07384 * 0.02562 * 11 10 9 13 13 C 1.38357 * 120.86966 * 359.97438 * 12 11 10 14 14 Cl 1.73606 * 120.51810 * 179.97438 * 13 12 11 15 15 C 1.46925 * 118.73843 * 306.64270 * 5 4 2 16 16 C 1.52757 * 109.00713 * 53.31082 * 15 5 4 17 17 C 1.53035 * 109.49600 * 120.09294 * 2 1 3 18 18 H 1.09003 * 109.45594 * 178.60181 * 17 2 1 19 19 C 1.53000 * 109.46269 * 298.56748 * 17 2 1 20 20 N 1.46504 * 109.46821 * 184.99886 * 19 17 2 21 21 C 1.36930 * 119.99616 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00286 * 359.97438 * 21 20 19 23 23 C 1.38818 * 120.00145 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99738 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00370 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46891 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.46824 * 120.00115 * 25 23 21 28 28 H 1.48500 * 109.46987 * 240.00500 * 25 23 21 29 29 H 1.09002 * 109.46848 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47077 * 300.06732 * 1 2 3 31 31 H 1.09006 * 109.46685 * 60.06540 * 1 2 3 32 32 H 1.09000 * 109.58726 * 174.89585 * 4 2 1 33 33 H 1.08998 * 109.70739 * 54.53147 * 4 2 1 34 34 H 1.08006 * 120.49072 * 0.24522 * 9 8 6 35 35 H 1.08000 * 119.52906 * 179.97438 * 10 9 8 36 36 H 1.07996 * 119.56564 * 180.02562 * 12 11 10 37 37 H 1.09001 * 109.58261 * 173.14835 * 15 5 4 38 38 H 1.08994 * 109.58715 * 293.56823 * 15 5 4 39 39 H 1.09003 * 109.56340 * 185.54855 * 16 15 5 40 40 H 1.09000 * 109.38486 * 65.51538 * 16 15 5 41 41 H 1.08998 * 109.47019 * 304.99736 * 19 17 2 42 42 H 1.08994 * 109.47021 * 65.00337 * 19 17 2 43 43 H 0.96998 * 120.00182 * 0.02562 * 20 19 17 44 44 H 0.96993 * 119.99935 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 -1.2498 5 7 1.6516 -2.1378 -1.1701 6 6 0.9740 -2.7212 -2.1786 7 8 0.7426 -2.0978 -3.1958 8 6 0.5117 -4.1218 -2.0473 9 6 1.4022 -5.1434 -1.7017 10 6 0.9296 -6.4366 -1.5957 11 7 -0.3406 -6.7141 -1.8145 12 6 -1.2137 -5.7834 -2.1421 13 6 -0.8273 -4.4611 -2.2706 14 17 -1.9853 -3.2423 -2.7033 15 6 2.0092 -2.9025 0.0324 16 6 1.5031 -2.1560 1.2654 17 6 2.0408 -0.7233 1.2482 18 1 3.1306 -0.7447 1.2350 19 6 1.5607 0.0165 2.4984 20 7 2.1468 -0.6049 3.6887 21 6 1.8586 -0.1089 4.9320 22 1 1.1997 0.7405 5.0353 23 6 2.4135 -0.6979 6.0600 24 7 3.2170 -1.7328 5.9342 25 14 2.0210 -0.0209 7.7562 26 1 1.1004 1.1371 7.6261 27 1 1.3733 -1.0782 8.5734 28 1 3.2767 0.4163 8.4174 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5148 0.8893 31 1 -0.3633 0.5129 -0.8906 32 1 3.1276 -0.6458 -1.2982 33 1 1.6028 -0.2732 -2.1403 34 1 2.4442 -4.9242 -1.5209 35 1 1.6102 -7.2319 -1.3297 36 1 -2.2448 -6.0561 -2.3118 37 1 1.5474 -3.8889 -0.0111 38 1 3.0926 -3.0063 0.0907 39 1 1.8481 -2.6634 2.1664 40 1 0.4133 -2.1357 1.2540 41 1 1.8696 1.0603 2.4440 42 1 0.4737 -0.0382 2.5579 43 1 2.7395 -1.3671 3.5959 44 1 3.6049 -2.1441 6.7223 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185206733.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:07 Heat of formation + Delta-G solvation = 8.980303 kcal Electronic energy + Delta-G solvation = -27376.221084 eV Core-core repulsion = 23547.721357 eV Total energy + Delta-G solvation = -3828.499727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.23697 -39.90287 -38.13158 -36.92193 -35.09266 -33.85586 -32.73320 -31.74997 -31.49410 -30.39956 -27.20389 -27.07702 -24.93434 -24.04943 -23.56949 -23.00273 -21.58139 -20.50567 -18.67089 -17.99828 -17.20870 -17.09190 -16.79932 -16.26036 -15.50271 -15.38040 -15.07045 -14.56611 -14.51708 -14.30608 -14.06440 -13.83706 -13.72132 -13.51398 -12.98014 -12.68359 -12.59678 -12.43641 -12.31389 -12.22746 -11.64961 -11.50073 -11.46843 -11.09886 -10.97567 -10.82837 -10.58390 -10.41200 -10.35702 -10.22334 -10.09413 -9.99332 -9.70623 -9.67734 -9.37150 -8.89493 -8.73908 -6.93885 -5.80126 -3.07922 0.32306 0.47130 1.65694 2.33663 2.71008 3.21308 3.40953 3.47168 3.48928 3.93618 3.96188 4.24096 4.36310 4.55852 4.69053 4.72469 4.85613 4.94250 5.03224 5.09631 5.16403 5.18821 5.37168 5.39473 5.48664 5.56672 5.65366 5.72668 5.77453 5.79451 5.95318 5.99764 6.03650 6.13325 6.24282 6.32707 6.38601 6.41582 6.60115 6.76596 6.89748 7.14147 7.34506 7.68215 7.84132 8.39392 9.50779 10.08605 10.43174 11.42958 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014759 B = 0.003007 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.654985 B = 9309.068800 C =10006.901551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.084 0.916 4 C 0.118 3.882 5 N -0.592 5.592 6 C 0.559 3.441 7 O -0.519 6.519 8 C -0.068 4.068 9 C -0.133 4.133 10 C 0.103 3.897 11 N -0.458 5.458 12 C 0.115 3.885 13 C -0.053 4.053 14 Cl -0.031 7.031 15 C 0.096 3.904 16 C -0.128 4.128 17 C -0.088 4.088 18 H 0.072 0.928 19 C 0.158 3.842 20 N -0.732 5.732 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.152 0.848 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.018 0.982 42 H 0.022 0.978 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.680 -6.994 -19.107 20.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.102 0.898 4 C -0.004 4.004 5 N -0.325 5.325 6 C 0.345 3.655 7 O -0.395 6.395 8 C -0.080 4.080 9 C -0.154 4.154 10 C -0.054 4.054 11 N -0.167 5.167 12 C -0.044 4.044 13 C -0.083 4.083 14 Cl -0.002 7.002 15 C -0.026 4.026 16 C -0.166 4.166 17 C -0.107 4.107 18 H 0.091 0.909 19 C 0.031 3.969 20 N -0.376 5.376 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.583 5.583 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.170 0.830 35 H 0.188 0.812 36 H 0.188 0.812 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.036 0.964 42 H 0.039 0.961 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.245 -7.276 -19.477 21.443 hybrid contribution 0.281 1.021 1.042 1.486 sum -4.964 -6.255 -18.435 20.090 Atomic orbital electron populations 1.21867 0.94833 1.01976 1.01586 1.21485 0.96725 0.99575 0.94036 0.89765 1.21762 0.99704 0.79389 0.99496 1.48013 1.54773 1.12023 1.17643 1.17986 0.78357 0.85351 0.83804 1.90814 1.56284 1.63820 1.28578 1.20305 0.92930 0.95580 0.99205 1.22441 1.01234 0.93002 0.98711 1.22907 0.92187 0.95468 0.94801 1.67711 1.03242 1.35773 1.09968 1.22844 1.00381 0.86138 0.94990 1.22170 0.90867 0.92522 1.02772 1.98426 1.57186 1.53769 1.90804 1.22070 1.00817 0.95366 0.84391 1.21897 1.01500 0.96155 0.97028 1.21307 1.00287 0.94541 0.94579 0.90924 1.20708 0.95940 0.94654 0.85605 1.42379 1.56846 1.37539 1.00862 1.19273 1.23026 1.10732 0.83823 0.91241 1.24714 1.00096 0.98365 0.97791 1.69655 1.35815 1.24395 1.28448 0.86140 0.77430 0.78030 0.84754 1.20586 1.21882 1.21879 0.92686 0.91829 0.93277 0.91090 0.88953 0.83014 0.81167 0.81162 0.89807 0.90556 0.89193 0.91362 0.96442 0.96072 0.78337 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.38 37.16 0.31 -1.55 16 2 C -0.10 -1.21 2.72 -90.50 -0.25 -1.46 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.35 5.82 -3.71 -0.02 1.33 16 5 N -0.59 -6.87 2.42 -174.06 -0.42 -7.29 16 6 C 0.56 7.14 6.75 -12.22 -0.08 7.06 16 7 O -0.52 -8.06 15.65 5.34 0.08 -7.97 16 8 C -0.07 -0.76 4.93 -104.62 -0.52 -1.27 16 9 C -0.13 -1.13 7.54 -39.03 -0.29 -1.43 16 10 C 0.10 0.82 11.17 -17.60 -0.20 0.62 16 11 N -0.46 -4.47 10.33 -13.27 -0.14 -4.61 16 12 C 0.11 1.08 10.99 -17.54 -0.19 0.89 16 13 C -0.05 -0.58 6.37 -38.91 -0.25 -0.83 16 14 Cl -0.03 -0.35 27.53 -51.86 -1.43 -1.78 16 15 C 0.10 1.04 5.51 -3.94 -0.02 1.02 16 16 C -0.13 -1.76 4.89 -26.84 -0.13 -1.89 16 17 C -0.09 -1.28 1.96 -90.58 -0.18 -1.46 16 18 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 19 C 0.16 3.01 5.19 -4.04 -0.02 2.99 16 20 N -0.73 -17.69 5.32 -59.91 -0.32 -18.00 16 21 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -27.48 13.06 55.49 0.72 -26.75 16 25 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H 0.05 0.75 5.97 -51.93 -0.31 0.44 16 30 H 0.06 0.85 6.59 -51.93 -0.34 0.51 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.12 7.02 -51.93 -0.36 0.75 16 34 H 0.15 0.97 7.35 -52.48 -0.39 0.58 16 35 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.08 0.82 4.71 -51.93 -0.24 0.58 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 1.43 7.15 -51.93 -0.37 1.06 16 40 H 0.07 1.00 6.33 -51.93 -0.33 0.67 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 43 H 0.38 9.58 6.84 -40.82 -0.28 9.30 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 362.71 15.07 5.47 5.47 Total: -1.00 -32.27 362.71 -9.04 -41.31 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.90 Total: 5.67 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.08 Total: -3.11 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.15 Total: -56.66 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.08 Total: -7.97 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.43 Total: -1.78 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.27 -9.04 -41.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185206733.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.292 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds