Wall clock time and date at job start Tue Mar 31 2020 20:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.49359 * 2 1 4 4 C 1.53190 * 109.49819 * 239.93788 * 2 1 3 5 5 N 1.46933 * 108.77042 * 294.68201 * 4 2 1 6 6 C 1.34782 * 120.62970 * 126.36958 * 5 4 2 7 7 O 1.21525 * 119.99615 * 3.96249 * 6 5 4 8 8 C 1.48071 * 120.00050 * 183.95500 * 6 5 4 9 9 C 1.39862 * 120.93475 * 306.88171 * 8 6 5 10 10 C 1.38089 * 119.02073 * 180.27238 * 9 8 6 11 11 N 1.31845 * 120.93780 * 359.97438 * 10 9 8 12 12 C 1.31755 * 122.07384 * 0.02562 * 11 10 9 13 13 C 1.38357 * 120.86966 * 359.97438 * 12 11 10 14 14 Cl 1.73606 * 120.51810 * 179.97438 * 13 12 11 15 15 C 1.46925 * 118.73843 * 306.64270 * 5 4 2 16 16 C 1.52757 * 109.00713 * 53.31082 * 15 5 4 17 17 C 1.53035 * 109.49600 * 120.09294 * 2 1 3 18 18 H 1.09003 * 109.45594 * 178.60181 * 17 2 1 19 19 C 1.53000 * 109.46269 * 298.56748 * 17 2 1 20 20 N 1.46504 * 109.46821 * 184.99886 * 19 17 2 21 21 C 1.36930 * 119.99616 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00286 * 359.97438 * 21 20 19 23 23 C 1.38818 * 120.00145 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99738 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00370 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46891 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.46824 * 120.00115 * 25 23 21 28 28 H 1.48500 * 109.46987 * 240.00500 * 25 23 21 29 29 H 1.09002 * 109.46848 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47077 * 300.06732 * 1 2 3 31 31 H 1.09006 * 109.46685 * 60.06540 * 1 2 3 32 32 H 1.09000 * 109.58726 * 174.89585 * 4 2 1 33 33 H 1.08998 * 109.70739 * 54.53147 * 4 2 1 34 34 H 1.08006 * 120.49072 * 0.24522 * 9 8 6 35 35 H 1.08000 * 119.52906 * 179.97438 * 10 9 8 36 36 H 1.07996 * 119.56564 * 180.02562 * 12 11 10 37 37 H 1.09001 * 109.58261 * 173.14835 * 15 5 4 38 38 H 1.08994 * 109.58715 * 293.56823 * 15 5 4 39 39 H 1.09003 * 109.56340 * 185.54855 * 16 15 5 40 40 H 1.09000 * 109.38486 * 65.51538 * 16 15 5 41 41 H 1.08998 * 109.47019 * 304.99736 * 19 17 2 42 42 H 1.08994 * 109.47021 * 65.00337 * 19 17 2 43 43 H 0.96998 * 120.00182 * 0.02562 * 20 19 17 44 44 H 0.96993 * 119.99935 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 -1.2498 5 7 1.6516 -2.1378 -1.1701 6 6 0.9740 -2.7212 -2.1786 7 8 0.7426 -2.0978 -3.1958 8 6 0.5117 -4.1218 -2.0473 9 6 1.4022 -5.1434 -1.7017 10 6 0.9296 -6.4366 -1.5957 11 7 -0.3406 -6.7141 -1.8145 12 6 -1.2137 -5.7834 -2.1421 13 6 -0.8273 -4.4611 -2.2706 14 17 -1.9853 -3.2423 -2.7033 15 6 2.0092 -2.9025 0.0324 16 6 1.5031 -2.1560 1.2654 17 6 2.0408 -0.7233 1.2482 18 1 3.1306 -0.7447 1.2350 19 6 1.5607 0.0165 2.4984 20 7 2.1468 -0.6049 3.6887 21 6 1.8586 -0.1089 4.9320 22 1 1.1997 0.7405 5.0353 23 6 2.4135 -0.6979 6.0600 24 7 3.2170 -1.7328 5.9342 25 14 2.0210 -0.0209 7.7562 26 1 1.1004 1.1371 7.6261 27 1 1.3733 -1.0782 8.5734 28 1 3.2767 0.4163 8.4174 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5148 0.8893 31 1 -0.3633 0.5129 -0.8906 32 1 3.1276 -0.6458 -1.2982 33 1 1.6028 -0.2732 -2.1403 34 1 2.4442 -4.9242 -1.5209 35 1 1.6102 -7.2319 -1.3297 36 1 -2.2448 -6.0561 -2.3118 37 1 1.5474 -3.8889 -0.0111 38 1 3.0926 -3.0063 0.0907 39 1 1.8481 -2.6634 2.1664 40 1 0.4133 -2.1357 1.2540 41 1 1.8696 1.0603 2.4440 42 1 0.4737 -0.0382 2.5579 43 1 2.7395 -1.3671 3.5959 44 1 3.6049 -2.1441 6.7223 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185206733.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:06 Heat of formation + Delta-G solvation = -10.390899 kcal Electronic energy + Delta-G solvation = -27377.061082 eV Core-core repulsion = 23547.721357 eV Total energy + Delta-G solvation = -3829.339726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.09356 -40.77742 -39.23179 -37.74136 -36.59911 -35.11704 -33.85712 -32.95521 -32.20306 -32.00011 -28.54817 -28.17853 -26.05516 -25.13131 -24.78477 -24.06448 -22.92930 -21.50501 -19.80083 -19.20825 -18.65441 -18.00532 -17.62131 -17.17842 -16.77499 -16.43837 -16.17839 -15.84046 -15.48218 -15.36580 -15.25863 -15.09878 -14.88666 -14.64957 -14.38193 -13.98992 -13.74375 -13.56681 -13.18501 -13.14270 -12.97259 -12.84708 -12.72210 -12.51227 -12.32924 -12.15675 -12.05180 -11.91448 -11.58945 -11.56728 -11.33527 -11.23776 -10.94215 -10.85465 -10.55195 -10.09192 -9.72779 -8.95254 -7.94055 -5.21012 -0.44524 -0.20551 0.86760 1.39745 1.47834 1.48486 1.57925 1.81905 2.50731 2.56843 3.08797 3.35220 3.39884 3.54872 3.66261 3.70554 3.72870 3.81362 4.01294 4.06027 4.20179 4.30041 4.36991 4.42252 4.44886 4.52878 4.64146 4.70023 4.72918 4.75460 4.80294 4.83896 4.96891 5.06597 5.15945 5.17056 5.21900 5.29100 5.33447 5.47120 5.52828 5.59300 6.19246 6.29528 6.66903 6.89000 7.36506 8.12884 8.37193 9.29387 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014759 B = 0.003007 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.654985 B = 9309.068800 C =10006.901551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.095 0.905 4 C 0.120 3.880 5 N -0.589 5.589 6 C 0.560 3.440 7 O -0.552 6.552 8 C -0.087 4.087 9 C -0.127 4.127 10 C 0.108 3.892 11 N -0.473 5.473 12 C 0.114 3.886 13 C -0.069 4.069 14 Cl -0.046 7.046 15 C 0.103 3.897 16 C -0.122 4.122 17 C -0.077 4.077 18 H 0.074 0.926 19 C 0.158 3.842 20 N -0.741 5.741 21 C -0.244 4.244 22 H 0.070 0.930 23 C -0.070 4.070 24 N -0.965 5.965 25 Si 0.967 3.033 26 H -0.270 1.270 27 H -0.293 1.293 28 H -0.293 1.293 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.176 0.824 35 H 0.205 0.795 36 H 0.188 0.812 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.015 0.985 42 H 0.016 0.984 43 H 0.377 0.623 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.071 -7.600 -19.534 21.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 H 0.113 0.887 4 C -0.001 4.001 5 N -0.320 5.320 6 C 0.347 3.653 7 O -0.430 6.430 8 C -0.099 4.099 9 C -0.148 4.148 10 C -0.048 4.048 11 N -0.182 5.182 12 C -0.043 4.043 13 C -0.099 4.099 14 Cl -0.017 7.017 15 C -0.018 4.018 16 C -0.160 4.160 17 C -0.096 4.096 18 H 0.093 0.907 19 C 0.032 3.968 20 N -0.384 5.384 21 C -0.376 4.376 22 H 0.088 0.912 23 C -0.263 4.263 24 N -0.616 5.616 25 Si 0.796 3.204 26 H -0.195 1.195 27 H -0.221 1.221 28 H -0.220 1.220 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.194 0.806 35 H 0.222 0.778 36 H 0.205 0.795 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.209 0.791 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.657 -7.861 -19.918 21.914 hybrid contribution 0.076 1.205 1.159 1.673 sum -4.581 -6.656 -18.759 20.426 Atomic orbital electron populations 1.21807 0.95290 1.01263 1.01422 1.21424 0.96189 1.00079 0.93294 0.88654 1.21764 1.00743 0.79178 0.98436 1.48039 1.54341 1.12132 1.17514 1.18225 0.77733 0.85932 0.83397 1.90793 1.57480 1.64848 1.29871 1.20351 0.93555 0.95259 1.00719 1.22725 1.01931 0.92498 0.97596 1.23500 0.92012 0.96167 0.93091 1.67795 1.04118 1.35870 1.10420 1.23112 1.01296 0.85528 0.94375 1.22307 0.90798 0.92787 1.03980 1.98414 1.57735 1.54462 1.91060 1.22068 1.02017 0.95269 0.82475 1.21767 1.00721 0.95811 0.97683 1.21183 1.00276 0.94758 0.93395 0.90728 1.20834 0.95323 0.94755 0.85876 1.42542 1.56874 1.37498 1.01495 1.19617 1.22274 1.10383 0.85305 0.91234 1.25447 1.00638 0.99051 1.01148 1.69786 1.37090 1.25683 1.29024 0.85171 0.77121 0.77552 0.80518 1.19460 1.22053 1.21995 0.93677 0.92822 0.92545 0.89202 0.89404 0.80620 0.77819 0.79493 0.88425 0.88483 0.91441 0.92524 0.96656 0.96605 0.79069 0.94002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.38 71.99 0.60 -2.91 16 2 C -0.09 -2.09 2.72 -10.72 -0.03 -2.12 16 3 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 4 C 0.12 2.53 5.82 86.36 0.50 3.03 16 5 N -0.59 -12.64 2.42 -822.89 -1.99 -14.63 16 6 C 0.56 13.65 6.75 86.85 0.59 14.23 16 7 O -0.55 -16.83 15.65 -3.79 -0.06 -16.89 16 8 C -0.09 -1.80 4.93 -19.87 -0.10 -1.90 16 9 C -0.13 -1.82 7.54 22.63 0.17 -1.65 16 10 C 0.11 1.42 11.17 84.66 0.95 2.36 16 11 N -0.47 -8.25 10.33 -195.91 -2.02 -10.28 16 12 C 0.11 2.03 10.99 84.73 0.93 2.96 16 13 C -0.07 -1.45 6.37 22.71 0.14 -1.31 16 14 Cl -0.05 -1.05 27.53 -2.72 -0.07 -1.12 16 15 C 0.10 2.03 5.51 86.22 0.48 2.50 16 16 C -0.12 -3.26 4.89 30.53 0.15 -3.11 16 17 C -0.08 -2.17 1.96 -10.77 -0.02 -2.20 16 18 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 19 C 0.16 5.99 5.19 86.38 0.45 6.44 16 20 N -0.74 -35.94 5.32 -343.45 -1.83 -37.77 16 21 C -0.24 -13.36 9.99 84.04 0.84 -12.52 16 22 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 23 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 24 N -0.96 -57.08 13.06 21.65 0.28 -56.80 16 25 Si 0.97 45.41 29.55 68.60 2.03 47.43 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 28 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 29 H 0.04 1.21 5.97 -2.39 -0.01 1.20 16 30 H 0.05 1.43 6.59 -2.39 -0.02 1.41 16 31 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 2.00 7.02 -2.39 -0.02 1.98 16 34 H 0.18 1.59 7.35 -2.91 -0.02 1.57 16 35 H 0.21 1.17 8.06 -2.91 -0.02 1.15 16 36 H 0.19 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.10 1.68 4.71 -2.39 -0.01 1.67 16 38 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 2.14 7.15 -2.39 -0.02 2.13 16 40 H 0.06 1.64 6.33 -2.39 -0.02 1.63 16 41 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.02 0.63 6.74 -2.39 -0.02 0.61 16 43 H 0.38 19.02 6.84 -92.71 -0.63 18.39 16 44 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -69.40 362.71 2.85 -66.55 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.40 Total: 23.18 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 6.11 Total: 0.33 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -5.56 Total: -119.47 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.06 Total: -16.89 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.07 Total: -1.12 kcal Total: -69.40 2.85 -66.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185206733.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.157 kcal (2) G-P(sol) polarization free energy of solvation -69.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds