Wall clock time and date at job start Tue Mar 31 2020 20:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.49076 * 2 1 4 4 C 1.52762 * 109.58903 * 240.04646 * 2 1 3 5 5 N 1.46922 * 109.00560 * 185.53299 * 4 2 1 6 6 C 1.34772 * 120.63186 * 233.58262 * 5 4 2 7 7 O 1.21551 * 120.00282 * 4.78923 * 6 5 4 8 8 C 1.47844 * 120.00363 * 184.78437 * 6 5 4 9 9 C 1.39570 * 120.55228 * 39.95291 * 8 6 5 10 10 N 1.31657 * 120.59694 * 180.02562 * 9 8 6 11 11 C 1.31947 * 121.89418 * 359.97438 * 10 9 8 12 12 C 1.38436 * 121.06225 * 359.97438 * 11 10 9 13 13 Cl 1.73602 * 120.35945 * 179.97438 * 12 11 10 14 14 C 1.38511 * 119.27714 * 0.02562 * 12 11 10 15 15 C 1.46929 * 118.73673 * 53.30982 * 5 4 2 16 16 C 1.53188 * 108.77992 * 306.64120 * 15 5 4 17 17 C 1.53038 * 109.49809 * 120.06406 * 2 1 3 18 18 H 1.08994 * 109.46048 * 61.32840 * 17 2 1 19 19 C 1.53001 * 109.45928 * 301.36936 * 17 2 1 20 20 N 1.46506 * 109.46910 * 174.93326 * 19 17 2 21 21 C 1.36934 * 119.99553 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00708 * 359.97438 * 21 20 19 23 23 C 1.38815 * 119.99909 * 179.97438 * 21 20 19 24 24 N 1.31614 * 120.00449 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99622 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47059 * 89.99993 * 25 23 21 27 27 H 1.48501 * 109.47013 * 209.99929 * 25 23 21 28 28 H 1.48500 * 109.47321 * 329.99583 * 25 23 21 29 29 H 1.08999 * 109.47168 * 299.93082 * 1 2 3 30 30 H 1.08994 * 109.47626 * 59.93840 * 1 2 3 31 31 H 1.09006 * 109.46821 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.50935 * 65.65161 * 4 2 1 33 33 H 1.09000 * 109.43430 * 305.37145 * 4 2 1 34 34 H 1.07999 * 119.69839 * 0.04588 * 9 8 6 35 35 H 1.08003 * 119.47061 * 179.97438 * 11 10 9 36 36 H 1.07999 * 120.85726 * 179.97438 * 14 12 11 37 37 H 1.09001 * 109.58677 * 66.43102 * 15 5 4 38 38 H 1.09011 * 109.58555 * 186.85323 * 15 5 4 39 39 H 1.08991 * 109.50385 * 174.58879 * 16 15 5 40 40 H 1.09000 * 109.49664 * 294.65625 * 16 15 5 41 41 H 1.08999 * 109.47205 * 294.93414 * 19 17 2 42 42 H 1.09003 * 109.47245 * 54.93637 * 19 17 2 43 43 H 0.96998 * 120.00070 * 0.02562 * 20 19 17 44 44 H 0.97000 * 120.00200 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0422 -0.7186 -1.2470 5 7 3.5053 -0.8283 -1.1690 6 6 4.2818 -0.3845 -2.1772 7 8 3.7799 0.1904 -3.1233 8 6 5.7443 -0.5967 -2.1324 9 6 6.2724 -1.8003 -1.6630 10 7 7.5746 -1.9901 -1.6222 11 6 8.4268 -1.0639 -2.0184 12 6 7.9833 0.1566 -2.4981 13 17 9.1207 1.3624 -3.0139 14 6 6.6222 0.4056 -2.5610 15 6 4.1059 -1.4254 0.0316 16 6 3.5709 -0.6939 1.2666 17 6 2.0408 -0.7227 1.2485 18 1 1.6973 -1.7570 1.2355 19 6 1.5031 -0.0229 2.4984 20 7 1.8912 -0.7834 3.6889 21 6 1.5189 -0.3462 4.9320 22 1 0.9396 0.5595 5.0349 23 6 1.8862 -1.0670 6.0601 24 7 1.5280 -0.6470 7.2549 25 14 2.8888 -2.6330 5.8822 26 1 4.3358 -2.3022 5.9271 27 1 2.5585 -3.5611 6.9935 28 1 2.5691 -3.2809 4.5848 29 1 -0.3633 0.5128 0.8906 30 1 -0.3634 0.5147 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7652 -0.1497 -2.1345 33 1 1.6032 -1.7150 -1.2974 34 1 5.6069 -2.5832 -1.3304 35 1 9.4875 -1.2611 -1.9676 36 1 6.2481 1.3489 -2.9305 37 1 3.8387 -2.4807 0.0876 38 1 5.1903 -1.3228 -0.0127 39 1 3.9334 -1.1882 2.1678 40 1 3.9159 0.3400 1.2549 41 1 1.9182 0.9831 2.5585 42 1 0.4160 0.0353 2.4429 43 1 2.4118 -1.5966 3.5966 44 1 1.7849 -1.1505 8.0432 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185293655.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:38 Heat of formation + Delta-G solvation = 9.802633 kcal Electronic energy + Delta-G solvation = -26872.791624 eV Core-core repulsion = 23044.327556 eV Total energy + Delta-G solvation = -3828.464068 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.37615 -39.91181 -38.20881 -37.16385 -35.32824 -33.95217 -33.03371 -32.20331 -31.64400 -30.76951 -27.39755 -27.14507 -24.96383 -24.24605 -23.46781 -22.60124 -21.34345 -20.49404 -19.64783 -18.06841 -17.69585 -17.51348 -17.14444 -16.38305 -15.57722 -15.36406 -14.98138 -14.81238 -14.47919 -14.25149 -14.23675 -13.79746 -13.51622 -13.50557 -13.30135 -12.98813 -12.86694 -12.58851 -12.42757 -12.09349 -12.00003 -11.80780 -11.73882 -11.38573 -11.06935 -10.93387 -10.77608 -10.57648 -10.46696 -10.37392 -10.20196 -10.10363 -9.91729 -9.61271 -9.45302 -8.93874 -8.85394 -7.25207 -5.79603 -3.15066 0.07912 0.46271 1.43249 2.30180 2.59304 3.11919 3.32831 3.34584 3.41912 3.73799 3.97649 4.10465 4.20170 4.54807 4.55464 4.56700 4.66431 4.72661 4.83771 4.86803 5.09395 5.20059 5.23221 5.30856 5.35418 5.49769 5.53075 5.60301 5.62850 5.69343 5.70971 5.76966 5.83065 6.03834 6.09680 6.13447 6.25013 6.31376 6.35141 6.68420 6.75821 7.02577 7.17269 7.74136 7.96840 8.39433 9.18529 9.90700 10.10448 11.39003 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.012351 B = 0.002955 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.410039 B = 9472.922648 C =10804.277235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 H 0.075 0.925 4 C 0.118 3.882 5 N -0.598 5.598 6 C 0.565 3.435 7 O -0.532 6.532 8 C -0.166 4.166 9 C 0.135 3.865 10 N -0.467 5.467 11 C 0.133 3.867 12 C -0.096 4.096 13 Cl -0.045 7.045 14 C -0.014 4.014 15 C 0.093 3.907 16 C -0.128 4.128 17 C -0.094 4.094 18 H 0.073 0.927 19 C 0.161 3.839 20 N -0.755 5.755 21 C -0.243 4.243 22 H 0.089 0.911 23 C 0.004 3.996 24 N -0.935 5.935 25 Si 0.883 3.117 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.173 0.827 35 H 0.172 0.828 36 H 0.155 0.845 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.025 0.975 42 H 0.033 0.967 43 H 0.360 0.640 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.075 -0.920 -23.184 25.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.004 4.004 5 N -0.330 5.330 6 C 0.352 3.648 7 O -0.409 6.409 8 C -0.172 4.172 9 C -0.023 4.023 10 N -0.175 5.175 11 C -0.024 4.024 12 C -0.125 4.125 13 Cl -0.016 7.016 14 C -0.041 4.041 15 C -0.030 4.030 16 C -0.166 4.166 17 C -0.113 4.113 18 H 0.092 0.908 19 C 0.034 3.966 20 N -0.401 5.401 21 C -0.373 4.373 22 H 0.107 0.893 23 C -0.192 4.192 24 N -0.583 5.583 25 Si 0.714 3.286 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.203 1.203 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.190 0.810 35 H 0.189 0.811 36 H 0.172 0.828 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.043 0.957 42 H 0.051 0.949 43 H 0.192 0.808 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.113 -1.169 -23.234 25.781 hybrid contribution 0.554 -0.226 -0.141 0.614 sum 11.666 -1.396 -23.375 26.162 Atomic orbital electron populations 1.21838 0.93992 1.02318 1.02388 1.21374 0.96424 1.00097 0.93780 0.90620 1.21711 0.77727 1.01325 0.99631 1.48031 1.07359 1.59978 1.17627 1.17936 0.85430 0.78718 0.82691 1.90803 1.74575 1.41607 1.33940 1.20972 0.94956 0.96805 1.04433 1.23342 0.91915 0.95290 0.91741 1.67921 1.03280 1.31150 1.15181 1.23057 1.00869 0.86993 0.91498 1.21996 0.91576 0.93602 1.05285 1.98407 1.59406 1.54700 1.89077 1.21586 0.90429 0.99540 0.92531 1.22266 0.98411 0.97807 0.84485 1.21957 0.96300 1.01513 0.96800 1.21411 0.94463 1.00380 0.95015 0.90837 1.20734 0.97284 0.94103 0.84505 1.42725 1.66311 1.28448 1.02622 1.19055 1.28572 1.07816 0.81885 0.89294 1.24679 1.00739 0.98675 0.95120 1.69697 1.50860 1.40637 0.97071 0.86566 0.80621 0.84484 0.76963 1.21056 1.21713 1.20339 0.91063 0.92787 0.92430 0.88815 0.91002 0.81017 0.81143 0.82752 0.90420 0.89566 0.89720 0.91219 0.95682 0.94897 0.80760 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.82 37.16 0.33 -1.24 16 2 C -0.10 -1.10 2.40 -90.72 -0.22 -1.32 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 4 C 0.12 1.23 5.70 -3.93 -0.02 1.21 16 5 N -0.60 -6.34 2.98 -174.14 -0.52 -6.86 16 6 C 0.57 6.63 7.35 -12.33 -0.09 6.53 16 7 O -0.53 -7.80 16.36 5.32 0.09 -7.72 16 8 C -0.17 -1.65 5.16 -104.82 -0.54 -2.19 16 9 C 0.14 1.21 8.55 -17.13 -0.15 1.06 16 10 N -0.47 -4.38 10.34 -12.88 -0.13 -4.51 16 11 C 0.13 1.07 10.97 -17.43 -0.19 0.87 16 12 C -0.10 -0.79 6.34 -39.41 -0.25 -1.04 16 13 Cl -0.04 -0.34 28.99 -51.86 -1.50 -1.84 16 14 C -0.01 -0.13 9.60 -38.83 -0.37 -0.50 16 15 C 0.09 0.90 4.90 -3.71 -0.02 0.88 16 16 C -0.13 -1.60 5.25 -26.61 -0.14 -1.74 16 17 C -0.09 -1.26 1.73 -90.58 -0.16 -1.42 16 18 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 19 C 0.16 2.88 5.41 -4.04 -0.02 2.86 16 20 N -0.76 -17.06 5.12 -59.90 -0.31 -17.37 16 21 C -0.24 -6.74 10.47 -15.06 -0.16 -6.90 16 22 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 23 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 24 N -0.93 -29.10 13.97 55.49 0.78 -28.32 16 25 Si 0.88 21.49 27.74 -169.99 -4.71 16.77 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 29 H 0.07 0.84 6.29 -51.93 -0.33 0.52 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.05 7.00 -51.93 -0.36 0.68 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.17 1.24 6.52 -52.49 -0.34 0.90 16 35 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 36 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 37 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 38 H 0.09 0.77 4.66 -51.92 -0.24 0.52 16 39 H 0.08 1.18 7.15 -51.93 -0.37 0.81 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.03 0.60 6.14 -51.93 -0.32 0.29 16 43 H 0.36 7.83 4.71 -40.82 -0.19 7.63 16 44 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 364.46 15.07 5.49 5.49 Total: -1.00 -32.78 364.46 -8.89 -41.67 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.97 Total: 5.60 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -2.09 Total: -2.93 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.18 Total: -57.06 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.09 Total: -7.72 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.77 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.50 Total: -1.84 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.78 -8.89 -41.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185293655.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.477 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds