Wall clock time and date at job start Tue Mar 31 2020 20:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.49076 * 2 1 4 4 C 1.52762 * 109.58903 * 240.04646 * 2 1 3 5 5 N 1.46922 * 109.00560 * 185.53299 * 4 2 1 6 6 C 1.34772 * 120.63186 * 233.58262 * 5 4 2 7 7 O 1.21551 * 120.00282 * 4.78923 * 6 5 4 8 8 C 1.47844 * 120.00363 * 184.78437 * 6 5 4 9 9 C 1.39570 * 120.55228 * 39.95291 * 8 6 5 10 10 N 1.31657 * 120.59694 * 180.02562 * 9 8 6 11 11 C 1.31947 * 121.89418 * 359.97438 * 10 9 8 12 12 C 1.38436 * 121.06225 * 359.97438 * 11 10 9 13 13 Cl 1.73602 * 120.35945 * 179.97438 * 12 11 10 14 14 C 1.38511 * 119.27714 * 0.02562 * 12 11 10 15 15 C 1.46929 * 118.73673 * 53.30982 * 5 4 2 16 16 C 1.53188 * 108.77992 * 306.64120 * 15 5 4 17 17 C 1.53038 * 109.49809 * 120.06406 * 2 1 3 18 18 H 1.08994 * 109.46048 * 61.32840 * 17 2 1 19 19 C 1.53001 * 109.45928 * 301.36936 * 17 2 1 20 20 N 1.46506 * 109.46910 * 174.93326 * 19 17 2 21 21 C 1.36934 * 119.99553 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00708 * 359.97438 * 21 20 19 23 23 C 1.38815 * 119.99909 * 179.97438 * 21 20 19 24 24 N 1.31614 * 120.00449 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99622 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47059 * 89.99993 * 25 23 21 27 27 H 1.48501 * 109.47013 * 209.99929 * 25 23 21 28 28 H 1.48500 * 109.47321 * 329.99583 * 25 23 21 29 29 H 1.08999 * 109.47168 * 299.93082 * 1 2 3 30 30 H 1.08994 * 109.47626 * 59.93840 * 1 2 3 31 31 H 1.09006 * 109.46821 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.50935 * 65.65161 * 4 2 1 33 33 H 1.09000 * 109.43430 * 305.37145 * 4 2 1 34 34 H 1.07999 * 119.69839 * 0.04588 * 9 8 6 35 35 H 1.08003 * 119.47061 * 179.97438 * 11 10 9 36 36 H 1.07999 * 120.85726 * 179.97438 * 14 12 11 37 37 H 1.09001 * 109.58677 * 66.43102 * 15 5 4 38 38 H 1.09011 * 109.58555 * 186.85323 * 15 5 4 39 39 H 1.08991 * 109.50385 * 174.58879 * 16 15 5 40 40 H 1.09000 * 109.49664 * 294.65625 * 16 15 5 41 41 H 1.08999 * 109.47205 * 294.93414 * 19 17 2 42 42 H 1.09003 * 109.47245 * 54.93637 * 19 17 2 43 43 H 0.96998 * 120.00070 * 0.02562 * 20 19 17 44 44 H 0.97000 * 120.00200 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0422 -0.7186 -1.2470 5 7 3.5053 -0.8283 -1.1690 6 6 4.2818 -0.3845 -2.1772 7 8 3.7799 0.1904 -3.1233 8 6 5.7443 -0.5967 -2.1324 9 6 6.2724 -1.8003 -1.6630 10 7 7.5746 -1.9901 -1.6222 11 6 8.4268 -1.0639 -2.0184 12 6 7.9833 0.1566 -2.4981 13 17 9.1207 1.3624 -3.0139 14 6 6.6222 0.4056 -2.5610 15 6 4.1059 -1.4254 0.0316 16 6 3.5709 -0.6939 1.2666 17 6 2.0408 -0.7227 1.2485 18 1 1.6973 -1.7570 1.2355 19 6 1.5031 -0.0229 2.4984 20 7 1.8912 -0.7834 3.6889 21 6 1.5189 -0.3462 4.9320 22 1 0.9396 0.5595 5.0349 23 6 1.8862 -1.0670 6.0601 24 7 1.5280 -0.6470 7.2549 25 14 2.8888 -2.6330 5.8822 26 1 4.3358 -2.3022 5.9271 27 1 2.5585 -3.5611 6.9935 28 1 2.5691 -3.2809 4.5848 29 1 -0.3633 0.5128 0.8906 30 1 -0.3634 0.5147 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7652 -0.1497 -2.1345 33 1 1.6032 -1.7150 -1.2974 34 1 5.6069 -2.5832 -1.3304 35 1 9.4875 -1.2611 -1.9676 36 1 6.2481 1.3489 -2.9305 37 1 3.8387 -2.4807 0.0876 38 1 5.1903 -1.3228 -0.0127 39 1 3.9334 -1.1882 2.1678 40 1 3.9159 0.3400 1.2549 41 1 1.9182 0.9831 2.5585 42 1 0.4160 0.0353 2.4429 43 1 2.4118 -1.5966 3.5966 44 1 1.7849 -1.1505 8.0432 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185293655.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:37 Heat of formation + Delta-G solvation = -11.007552 kcal Electronic energy + Delta-G solvation = -26873.694022 eV Core-core repulsion = 23044.327556 eV Total energy + Delta-G solvation = -3829.366466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.14806 -40.72578 -39.24578 -37.77991 -36.75433 -35.21160 -33.87037 -33.55057 -32.38298 -32.35441 -28.75685 -27.97705 -25.99238 -24.94590 -24.83351 -23.69097 -22.70453 -21.49566 -20.61928 -19.63273 -18.75771 -18.31941 -17.85635 -17.26018 -16.65544 -16.33217 -16.23984 -15.97590 -15.64266 -15.33708 -15.23228 -14.90108 -14.61251 -14.52277 -14.44939 -14.11903 -14.03715 -13.61228 -13.26435 -13.23155 -13.10433 -12.91695 -12.81136 -12.68978 -12.35985 -12.16135 -12.00051 -11.84432 -11.69873 -11.65027 -11.33789 -11.24810 -11.08266 -10.93033 -10.67623 -10.11655 -9.76302 -9.26085 -8.01182 -5.34695 -0.59198 -0.21121 0.80359 1.38753 1.44010 1.46649 1.51504 1.78513 2.43135 2.50636 3.05343 3.30314 3.30475 3.47791 3.52940 3.53832 3.68520 3.78425 3.89414 3.93246 4.02770 4.10443 4.26299 4.35696 4.47672 4.59249 4.62553 4.65702 4.67134 4.71957 4.78076 4.82084 4.97156 5.07046 5.09180 5.13323 5.19892 5.24671 5.33492 5.45481 5.56755 5.77469 6.17321 6.22648 6.52386 6.87734 7.10303 7.85916 8.06707 9.20726 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.012351 B = 0.002955 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.410039 B = 9472.922648 C =10804.277235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 H 0.062 0.938 4 C 0.121 3.879 5 N -0.595 5.595 6 C 0.567 3.433 7 O -0.568 6.568 8 C -0.178 4.178 9 C 0.140 3.860 10 N -0.480 5.480 11 C 0.138 3.862 12 C -0.097 4.097 13 Cl -0.039 7.039 14 C -0.021 4.021 15 C 0.099 3.901 16 C -0.127 4.127 17 C -0.083 4.083 18 H 0.084 0.916 19 C 0.158 3.842 20 N -0.754 5.754 21 C -0.235 4.235 22 H 0.050 0.950 23 C -0.068 4.068 24 N -0.988 5.988 25 Si 0.957 3.043 26 H -0.276 1.276 27 H -0.299 1.299 28 H -0.243 1.243 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.191 0.809 35 H 0.196 0.804 36 H 0.152 0.848 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.012 0.988 42 H 0.031 0.969 43 H 0.368 0.632 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.615 -3.210 -25.097 28.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.081 0.919 4 C -0.001 4.001 5 N -0.326 5.326 6 C 0.355 3.645 7 O -0.448 6.448 8 C -0.184 4.184 9 C -0.018 4.018 10 N -0.189 5.189 11 C -0.019 4.019 12 C -0.126 4.126 13 Cl -0.010 7.010 14 C -0.048 4.048 15 C -0.023 4.023 16 C -0.165 4.165 17 C -0.102 4.102 18 H 0.103 0.897 19 C 0.032 3.968 20 N -0.400 5.400 21 C -0.366 4.366 22 H 0.068 0.932 23 C -0.259 4.259 24 N -0.638 5.638 25 Si 0.783 3.217 26 H -0.202 1.202 27 H -0.225 1.225 28 H -0.167 1.167 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.208 0.792 35 H 0.213 0.787 36 H 0.170 0.830 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.030 0.970 42 H 0.048 0.952 43 H 0.202 0.798 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.654 -3.459 -25.196 28.406 hybrid contribution 0.043 0.644 0.447 0.785 sum 12.698 -2.814 -24.748 27.958 Atomic orbital electron populations 1.21810 0.93349 1.02924 1.02239 1.21272 0.96911 0.99276 0.93363 0.91939 1.21698 0.77779 1.02172 0.98415 1.48073 1.07408 1.59496 1.17596 1.18160 0.86103 0.77947 0.82291 1.90784 1.75333 1.43295 1.35369 1.20864 0.93924 0.97668 1.05923 1.23588 0.92135 0.95107 0.90958 1.68000 1.03485 1.31567 1.15801 1.23475 1.01919 0.86401 0.90112 1.22007 0.91261 0.93999 1.05329 1.98412 1.59034 1.54526 1.89013 1.21671 0.91025 0.99560 0.92519 1.22318 0.98939 0.98557 0.82477 1.21911 0.95452 1.01206 0.97957 1.21307 0.95160 1.00429 0.93284 0.89734 1.20880 0.97229 0.93603 0.85060 1.42673 1.66215 1.29035 1.02083 1.19017 1.27064 1.06299 0.84213 0.93164 1.25580 1.02755 1.02993 0.94535 1.69900 1.53107 1.42684 0.98137 0.85388 0.78742 0.79452 0.78124 1.20203 1.22546 1.16685 0.92834 0.91339 0.91430 0.89431 0.88889 0.79207 0.78739 0.82995 0.87772 0.88424 0.90681 0.92484 0.97026 0.95155 0.79830 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.82 71.98 0.64 -2.23 16 2 C -0.09 -1.87 2.40 -10.86 -0.03 -1.89 16 3 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 4 C 0.12 2.24 5.70 86.22 0.49 2.73 16 5 N -0.60 -11.19 2.98 -823.14 -2.45 -13.64 16 6 C 0.57 12.42 7.35 86.79 0.64 13.06 16 7 O -0.57 -16.27 16.36 -3.88 -0.06 -16.33 16 8 C -0.18 -3.24 5.16 -19.99 -0.10 -3.34 16 9 C 0.14 2.12 8.55 85.04 0.73 2.85 16 10 N -0.48 -7.69 10.34 -194.66 -2.01 -9.70 16 11 C 0.14 1.87 10.97 84.72 0.93 2.80 16 12 C -0.10 -1.44 6.34 22.38 0.14 -1.30 16 13 Cl -0.04 -0.53 28.99 -2.72 -0.08 -0.60 16 14 C -0.02 -0.37 9.60 22.75 0.22 -0.15 16 15 C 0.10 1.60 4.90 86.36 0.42 2.03 16 16 C -0.13 -2.91 5.25 30.67 0.16 -2.75 16 17 C -0.08 -2.07 1.73 -10.77 -0.02 -2.08 16 18 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 19 C 0.16 5.62 5.41 86.38 0.47 6.09 16 20 N -0.75 -33.45 5.12 -343.44 -1.76 -35.21 16 21 C -0.23 -13.24 10.47 84.03 0.88 -12.36 16 22 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 23 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 24 N -0.99 -63.16 13.97 21.65 0.30 -62.86 16 25 Si 0.96 43.71 27.74 68.60 1.90 45.62 16 26 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 27 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 28 H -0.24 -9.61 6.52 99.48 0.65 -8.96 16 29 H 0.05 1.24 6.29 -2.39 -0.02 1.23 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.09 1.80 7.00 -2.39 -0.02 1.78 16 33 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.19 2.04 6.52 -2.91 -0.02 2.02 16 35 H 0.20 1.55 8.06 -2.91 -0.02 1.52 16 36 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 37 H 0.10 1.23 8.12 -2.39 -0.02 1.21 16 38 H 0.10 1.42 4.66 -2.38 -0.01 1.41 16 39 H 0.07 1.90 7.15 -2.39 -0.02 1.88 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.03 1.11 6.14 -2.39 -0.01 1.10 16 43 H 0.37 15.09 4.71 -92.71 -0.44 14.65 16 44 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -72.51 364.46 2.41 -70.10 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.54 Total: 22.65 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 6.03 Total: -0.02 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -5.92 Total: -121.41 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.06 Total: -16.33 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.90 Total: 45.62 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.60 kcal Total: -72.51 2.41 -70.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185293655.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.097 kcal (2) G-P(sol) polarization free energy of solvation -72.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds