Wall clock time and date at job start Tue Mar 31 2020 20:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.52074 * 2 1 4 4 C 1.53191 * 109.49736 * 120.08319 * 2 1 3 5 5 N 1.46924 * 108.89110 * 174.51373 * 4 2 1 6 6 C 1.34783 * 120.63138 * 126.46560 * 5 4 2 7 7 O 1.21555 * 119.99304 * 354.18749 * 6 5 4 8 8 C 1.47836 * 120.00454 * 174.18402 * 6 5 4 9 9 C 1.39558 * 120.55211 * 140.05214 * 8 6 5 10 10 N 1.31667 * 120.59612 * 180.02562 * 9 8 6 11 11 C 1.31954 * 121.89112 * 0.02562 * 10 9 8 12 12 C 1.38425 * 121.06194 * 359.97438 * 11 10 9 13 13 Cl 1.73597 * 120.36143 * 180.02562 * 12 11 10 14 14 C 1.38511 * 119.27801 * 359.72605 * 12 11 10 15 15 C 1.46954 * 118.71923 * 306.64332 * 5 4 2 16 16 C 1.53189 * 108.88733 * 53.35506 * 15 5 4 17 17 C 1.53040 * 109.31544 * 305.44183 * 16 15 5 18 18 H 1.08997 * 109.45884 * 301.34868 * 17 16 15 19 19 C 1.52998 * 109.46401 * 181.38636 * 17 16 15 20 20 N 1.46493 * 109.47031 * 64.93238 * 19 17 16 21 21 C 1.36942 * 119.99974 * 180.02562 * 20 19 17 22 22 H 1.07993 * 119.99874 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99905 * 180.02562 * 21 20 19 24 24 N 1.31621 * 120.00238 * 359.97438 * 23 21 20 25 25 Si 1.86811 * 119.99933 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46945 * 89.99857 * 25 23 21 27 27 H 1.48498 * 109.47138 * 209.99953 * 25 23 21 28 28 H 1.48499 * 109.46651 * 329.99987 * 25 23 21 29 29 H 1.08996 * 109.47419 * 299.91229 * 1 2 3 30 30 H 1.08996 * 109.47650 * 59.91766 * 1 2 3 31 31 H 1.09007 * 109.46792 * 179.91664 * 1 2 3 32 32 H 1.08997 * 109.58943 * 294.37553 * 4 2 1 33 33 H 1.09000 * 109.58745 * 54.66236 * 4 2 1 34 34 H 1.08002 * 119.70612 * 0.03480 * 9 8 6 35 35 H 1.07997 * 119.46773 * 179.97438 * 11 10 9 36 36 H 1.08004 * 120.86228 * 180.27282 * 14 12 11 37 37 H 1.09002 * 109.46585 * 293.56990 * 15 5 4 38 38 H 1.09007 * 109.60041 * 173.21432 * 15 5 4 39 39 H 1.09010 * 109.49901 * 185.49480 * 16 15 5 40 40 H 1.09001 * 109.53113 * 65.41365 * 16 15 5 41 41 H 1.08996 * 109.47028 * 184.93331 * 19 17 16 42 42 H 1.09004 * 109.46838 * 304.93510 * 19 17 16 43 43 H 0.96999 * 120.00651 * 0.02562 * 20 19 17 44 44 H 0.97002 * 120.00087 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7238 1.2495 5 7 3.5045 -0.8321 1.1713 6 6 4.2807 -0.3913 2.1812 7 8 3.7803 0.1962 3.1203 8 6 5.7405 -0.6224 2.1467 9 6 6.6259 0.3691 2.5717 10 7 7.9262 0.1644 2.5409 11 6 8.4431 -0.9715 2.1123 12 6 7.6328 -2.0045 1.6737 13 17 8.3323 -3.4914 1.1141 14 6 6.2574 -1.8411 1.6921 15 6 4.1053 -1.4266 -0.0308 16 6 3.5708 -0.6949 -1.2660 17 6 2.0408 -0.7230 -1.2484 18 1 1.6968 -1.7572 -1.2354 19 6 1.5037 -0.0231 -2.4984 20 7 1.8931 -0.7829 -3.6888 21 6 1.5225 -0.3449 -4.9322 22 1 0.9428 0.5605 -5.0352 23 6 1.8910 -1.0651 -6.0602 24 7 2.5971 -2.1688 -5.9347 25 14 1.3861 -0.4672 -7.7565 26 1 2.4344 0.4361 -8.2952 27 1 1.2222 -1.6316 -8.6633 28 1 0.1003 0.2693 -7.6591 29 1 -0.3634 0.5124 0.8907 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 1.7638 -0.1581 2.1389 33 1 1.6034 -1.7208 1.2992 34 1 6.2411 1.3128 2.9293 35 1 9.5157 -1.0972 2.1034 36 1 5.6011 -2.6318 1.3599 37 1 3.8376 -2.4818 -0.0868 38 1 5.1897 -1.3245 0.0136 39 1 3.9334 -1.1896 -2.1672 40 1 3.9158 0.3390 -1.2547 41 1 0.4166 0.0345 -2.4437 42 1 1.9184 0.9832 -2.5579 43 1 2.4134 -1.5963 -3.5964 44 1 2.8550 -2.6719 -6.7230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185293656.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:08 Heat of formation + Delta-G solvation = 4.345139 kcal Electronic energy + Delta-G solvation = -26864.876790 eV Core-core repulsion = 23036.176067 eV Total energy + Delta-G solvation = -3828.700723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.26814 -39.81927 -38.08044 -37.05980 -35.21173 -33.99876 -32.79337 -32.03382 -31.58784 -30.37821 -27.09172 -27.01472 -24.96314 -24.04254 -23.58648 -22.56389 -21.45409 -20.38364 -19.52759 -17.79103 -17.57840 -17.12436 -17.04649 -16.30696 -15.57605 -15.25142 -14.94558 -14.65263 -14.45745 -14.22443 -14.02561 -13.75687 -13.61182 -13.34134 -13.11289 -12.83366 -12.64041 -12.52960 -12.44420 -12.01218 -11.88607 -11.69624 -11.67141 -11.03910 -10.95976 -10.85023 -10.60756 -10.47862 -10.44711 -10.25947 -10.13028 -10.01398 -9.76978 -9.67011 -9.45278 -8.89719 -8.75832 -6.93721 -5.79894 -3.07860 0.17849 0.50662 1.52332 2.37473 2.68256 3.21668 3.41362 3.46937 3.48193 3.85512 4.06064 4.15253 4.25989 4.55592 4.61552 4.72004 4.78929 4.86389 4.92312 5.01079 5.19984 5.29608 5.32940 5.37882 5.42538 5.54348 5.62153 5.70595 5.77542 5.83256 5.86741 5.91923 6.01275 6.15011 6.22597 6.26388 6.35726 6.43927 6.55559 6.78524 6.88127 7.11146 7.28978 7.67700 7.82247 8.39531 9.50820 10.08648 10.43095 11.43051 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.011176 B = 0.003036 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.878884 B = 9219.040449 C =10993.493269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.074 0.926 4 C 0.118 3.882 5 N -0.598 5.598 6 C 0.565 3.435 7 O -0.533 6.533 8 C -0.165 4.165 9 C 0.157 3.843 10 N -0.469 5.469 11 C 0.133 3.867 12 C -0.097 4.097 13 Cl -0.043 7.043 14 C -0.035 4.035 15 C 0.095 3.905 16 C -0.125 4.125 17 C -0.089 4.089 18 H 0.073 0.927 19 C 0.156 3.844 20 N -0.732 5.732 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.173 0.827 35 H 0.171 0.829 36 H 0.155 0.845 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.025 0.975 42 H 0.016 0.984 43 H 0.383 0.617 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.242 -0.582 18.910 20.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.092 0.908 4 C -0.004 4.004 5 N -0.330 5.330 6 C 0.352 3.648 7 O -0.410 6.410 8 C -0.171 4.171 9 C -0.001 4.001 10 N -0.177 5.177 11 C -0.024 4.024 12 C -0.126 4.126 13 Cl -0.014 7.014 14 C -0.062 4.062 15 C -0.027 4.027 16 C -0.163 4.163 17 C -0.108 4.108 18 H 0.091 0.909 19 C 0.029 3.971 20 N -0.376 5.376 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.190 0.810 35 H 0.188 0.812 36 H 0.173 0.827 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.034 0.966 43 H 0.217 0.783 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.505 0.349 19.503 21.279 hybrid contribution -0.523 -0.900 -1.512 1.836 sum 7.983 -0.551 17.990 19.689 Atomic orbital electron populations 1.21829 0.94203 1.02255 1.02166 1.21461 0.96260 0.99996 0.93981 0.90762 1.21783 0.77831 1.01214 0.99583 1.48076 1.07337 1.59994 1.17590 1.17952 0.85359 0.78849 0.82611 1.90800 1.74453 1.41263 1.34525 1.20993 0.95503 0.96126 1.04455 1.23077 0.87513 0.98515 0.90989 1.67956 1.13991 1.21263 1.14470 1.23059 1.00986 0.86892 0.91504 1.22002 0.94084 0.91349 1.05145 1.98416 1.83881 1.31546 1.87589 1.21871 0.93848 0.97217 0.93261 1.22238 0.98251 0.97778 0.84426 1.21938 0.96214 1.01196 0.96988 1.21351 0.94536 1.00272 0.94651 0.90867 1.20749 0.96714 0.94056 0.85574 1.42369 1.65439 1.28963 1.00844 1.19224 1.27699 1.06212 0.83832 0.91287 1.24713 1.00926 0.97491 0.97785 1.69647 1.42813 1.17282 1.28558 0.86211 0.78081 0.77483 0.84558 1.21746 1.21776 1.20788 0.92919 0.91224 0.92459 0.88933 0.91092 0.80988 0.81215 0.82714 0.90623 0.89782 0.89036 0.91660 0.95734 0.96572 0.78343 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.81 37.16 0.33 -1.34 16 2 C -0.10 -1.19 2.42 -90.50 -0.22 -1.41 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.33 5.72 -3.71 -0.02 1.31 16 5 N -0.60 -6.88 2.98 -173.86 -0.52 -7.40 16 6 C 0.57 6.99 7.34 -12.33 -0.09 6.90 16 7 O -0.53 -8.05 16.36 5.32 0.09 -7.96 16 8 C -0.17 -1.74 5.13 -104.83 -0.54 -2.28 16 9 C 0.16 1.61 10.81 -17.13 -0.19 1.43 16 10 N -0.47 -4.77 10.35 -12.88 -0.13 -4.90 16 11 C 0.13 1.14 10.97 -17.43 -0.19 0.95 16 12 C -0.10 -0.84 6.34 -39.41 -0.25 -1.08 16 13 Cl -0.04 -0.35 28.98 -51.86 -1.50 -1.85 16 14 C -0.04 -0.32 7.32 -38.83 -0.28 -0.61 16 15 C 0.10 1.04 4.92 -3.70 -0.02 1.02 16 16 C -0.13 -1.73 5.25 -26.61 -0.14 -1.87 16 17 C -0.09 -1.30 1.73 -90.58 -0.16 -1.46 16 18 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 19 C 0.16 2.96 5.41 -4.05 -0.02 2.94 16 20 N -0.73 -17.67 5.32 -59.92 -0.32 -17.99 16 21 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 25 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.87 6.30 -51.93 -0.33 0.54 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 1.10 7.00 -51.93 -0.36 0.73 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.16 1.23 6.68 -52.48 -0.35 0.88 16 37 H 0.08 0.75 8.13 -51.93 -0.42 0.32 16 38 H 0.08 0.84 4.76 -51.92 -0.25 0.59 16 39 H 0.09 1.46 7.15 -51.92 -0.37 1.09 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.02 0.47 6.14 -51.93 -0.32 0.16 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.38 9.59 6.84 -40.82 -0.28 9.31 16 44 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -31.41 367.83 -9.21 -40.62 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.03 Total: 6.29 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -2.03 Total: -2.65 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.25 Total: -57.07 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.09 Total: -7.96 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.50 Total: -1.85 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.41 -9.21 -40.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185293656.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.964 kcal (2) G-P(sol) polarization free energy of solvation -31.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds