Wall clock time and date at job start Tue Mar 31 2020 20:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.52074 * 2 1 4 4 C 1.53191 * 109.49736 * 120.08319 * 2 1 3 5 5 N 1.46924 * 108.89110 * 174.51373 * 4 2 1 6 6 C 1.34783 * 120.63138 * 126.46560 * 5 4 2 7 7 O 1.21555 * 119.99304 * 354.18749 * 6 5 4 8 8 C 1.47836 * 120.00454 * 174.18402 * 6 5 4 9 9 C 1.39558 * 120.55211 * 140.05214 * 8 6 5 10 10 N 1.31667 * 120.59612 * 180.02562 * 9 8 6 11 11 C 1.31954 * 121.89112 * 0.02562 * 10 9 8 12 12 C 1.38425 * 121.06194 * 359.97438 * 11 10 9 13 13 Cl 1.73597 * 120.36143 * 180.02562 * 12 11 10 14 14 C 1.38511 * 119.27801 * 359.72605 * 12 11 10 15 15 C 1.46954 * 118.71923 * 306.64332 * 5 4 2 16 16 C 1.53189 * 108.88733 * 53.35506 * 15 5 4 17 17 C 1.53040 * 109.31544 * 305.44183 * 16 15 5 18 18 H 1.08997 * 109.45884 * 301.34868 * 17 16 15 19 19 C 1.52998 * 109.46401 * 181.38636 * 17 16 15 20 20 N 1.46493 * 109.47031 * 64.93238 * 19 17 16 21 21 C 1.36942 * 119.99974 * 180.02562 * 20 19 17 22 22 H 1.07993 * 119.99874 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99905 * 180.02562 * 21 20 19 24 24 N 1.31621 * 120.00238 * 359.97438 * 23 21 20 25 25 Si 1.86811 * 119.99933 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46945 * 89.99857 * 25 23 21 27 27 H 1.48498 * 109.47138 * 209.99953 * 25 23 21 28 28 H 1.48499 * 109.46651 * 329.99987 * 25 23 21 29 29 H 1.08996 * 109.47419 * 299.91229 * 1 2 3 30 30 H 1.08996 * 109.47650 * 59.91766 * 1 2 3 31 31 H 1.09007 * 109.46792 * 179.91664 * 1 2 3 32 32 H 1.08997 * 109.58943 * 294.37553 * 4 2 1 33 33 H 1.09000 * 109.58745 * 54.66236 * 4 2 1 34 34 H 1.08002 * 119.70612 * 0.03480 * 9 8 6 35 35 H 1.07997 * 119.46773 * 179.97438 * 11 10 9 36 36 H 1.08004 * 120.86228 * 180.27282 * 14 12 11 37 37 H 1.09002 * 109.46585 * 293.56990 * 15 5 4 38 38 H 1.09007 * 109.60041 * 173.21432 * 15 5 4 39 39 H 1.09010 * 109.49901 * 185.49480 * 16 15 5 40 40 H 1.09001 * 109.53113 * 65.41365 * 16 15 5 41 41 H 1.08996 * 109.47028 * 184.93331 * 19 17 16 42 42 H 1.09004 * 109.46838 * 304.93510 * 19 17 16 43 43 H 0.96999 * 120.00651 * 0.02562 * 20 19 17 44 44 H 0.97002 * 120.00087 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7238 1.2495 5 7 3.5045 -0.8321 1.1713 6 6 4.2807 -0.3913 2.1812 7 8 3.7803 0.1962 3.1203 8 6 5.7405 -0.6224 2.1467 9 6 6.6259 0.3691 2.5717 10 7 7.9262 0.1644 2.5409 11 6 8.4431 -0.9715 2.1123 12 6 7.6328 -2.0045 1.6737 13 17 8.3323 -3.4914 1.1141 14 6 6.2574 -1.8411 1.6921 15 6 4.1053 -1.4266 -0.0308 16 6 3.5708 -0.6949 -1.2660 17 6 2.0408 -0.7230 -1.2484 18 1 1.6968 -1.7572 -1.2354 19 6 1.5037 -0.0231 -2.4984 20 7 1.8931 -0.7829 -3.6888 21 6 1.5225 -0.3449 -4.9322 22 1 0.9428 0.5605 -5.0352 23 6 1.8910 -1.0651 -6.0602 24 7 2.5971 -2.1688 -5.9347 25 14 1.3861 -0.4672 -7.7565 26 1 2.4344 0.4361 -8.2952 27 1 1.2222 -1.6316 -8.6633 28 1 0.1003 0.2693 -7.6591 29 1 -0.3634 0.5124 0.8907 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 1.7638 -0.1581 2.1389 33 1 1.6034 -1.7208 1.2992 34 1 6.2411 1.3128 2.9293 35 1 9.5157 -1.0972 2.1034 36 1 5.6011 -2.6318 1.3599 37 1 3.8376 -2.4818 -0.0868 38 1 5.1897 -1.3245 0.0136 39 1 3.9334 -1.1896 -2.1672 40 1 3.9158 0.3390 -1.2547 41 1 0.4166 0.0345 -2.4437 42 1 1.9184 0.9832 -2.5579 43 1 2.4134 -1.5963 -3.5964 44 1 2.8550 -2.6719 -6.7230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185293656.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:05 Heat of formation + Delta-G solvation = -14.314650 kcal Electronic energy + Delta-G solvation = -26865.685939 eV Core-core repulsion = 23036.176067 eV Total energy + Delta-G solvation = -3829.509872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.11803 -40.71455 -39.19022 -37.73297 -36.64173 -35.31235 -33.86348 -33.24760 -32.33765 -32.03685 -28.48226 -27.97101 -26.07489 -25.16217 -24.75553 -23.71947 -22.75620 -21.42826 -20.58865 -19.16621 -18.59370 -18.28595 -17.88980 -17.25364 -16.74911 -16.35654 -16.16139 -15.76686 -15.60980 -15.35248 -15.25565 -15.12863 -14.58628 -14.48738 -14.29698 -13.97964 -13.85566 -13.62579 -13.15149 -13.12672 -12.94831 -12.93349 -12.81021 -12.70173 -12.33898 -12.18100 -11.99867 -11.89161 -11.64803 -11.60474 -11.44914 -11.19566 -10.96226 -10.87004 -10.63552 -10.17321 -9.75290 -8.95099 -7.93973 -5.21153 -0.56614 -0.21487 0.84174 1.45767 1.48141 1.48716 1.57120 1.78479 2.45447 2.56821 3.07310 3.31307 3.39751 3.48497 3.52675 3.67080 3.72319 3.80515 3.91144 3.97867 4.10137 4.20908 4.29305 4.35481 4.50938 4.59779 4.62513 4.65817 4.67911 4.72461 4.78405 4.83985 4.97745 5.09802 5.11851 5.15054 5.21509 5.26862 5.35249 5.46316 5.51590 5.58894 6.16947 6.29241 6.56031 6.87488 7.36222 8.12726 8.36756 9.29232 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.011176 B = 0.003036 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.878884 B = 9219.040449 C =10993.493269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.065 0.935 4 C 0.120 3.880 5 N -0.596 5.596 6 C 0.568 3.432 7 O -0.564 6.564 8 C -0.177 4.177 9 C 0.152 3.848 10 N -0.484 5.484 11 C 0.137 3.863 12 C -0.097 4.097 13 Cl -0.036 7.036 14 C -0.032 4.032 15 C 0.104 3.896 16 C -0.120 4.120 17 C -0.079 4.079 18 H 0.073 0.927 19 C 0.156 3.844 20 N -0.741 5.741 21 C -0.245 4.245 22 H 0.070 0.930 23 C -0.070 4.070 24 N -0.965 5.965 25 Si 0.967 3.033 26 H -0.289 1.289 27 H -0.294 1.294 28 H -0.272 1.272 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.176 0.824 35 H 0.196 0.804 36 H 0.168 0.832 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.027 0.973 42 H 0.008 0.992 43 H 0.376 0.624 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.469 -0.935 19.578 21.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.083 0.917 4 C -0.001 4.001 5 N -0.327 5.327 6 C 0.356 3.644 7 O -0.444 6.444 8 C -0.182 4.182 9 C -0.006 4.006 10 N -0.192 5.192 11 C -0.020 4.020 12 C -0.126 4.126 13 Cl -0.007 7.007 14 C -0.059 4.059 15 C -0.018 4.018 16 C -0.159 4.159 17 C -0.097 4.097 18 H 0.092 0.908 19 C 0.030 3.970 20 N -0.384 5.384 21 C -0.377 4.377 22 H 0.088 0.912 23 C -0.263 4.263 24 N -0.616 5.616 25 Si 0.797 3.203 26 H -0.216 1.216 27 H -0.221 1.221 28 H -0.197 1.197 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.193 0.807 35 H 0.212 0.788 36 H 0.185 0.815 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.045 0.955 42 H 0.026 0.974 43 H 0.209 0.791 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.716 0.017 20.185 21.987 hybrid contribution -0.566 -0.764 -1.693 1.942 sum 8.150 -0.747 18.492 20.222 Atomic orbital electron populations 1.21799 0.93272 1.02740 1.02358 1.21356 0.96976 0.99220 0.93193 0.91687 1.21786 0.77792 1.01955 0.98612 1.48103 1.07468 1.59656 1.17475 1.18160 0.86009 0.78074 0.82149 1.90782 1.75170 1.42723 1.35716 1.20838 0.94411 0.96989 1.05960 1.23174 0.87743 0.98760 0.90896 1.68003 1.13830 1.22130 1.15213 1.23492 1.02207 0.86200 0.90131 1.22023 0.93938 0.91667 1.04995 1.98424 1.83726 1.31066 1.87472 1.21994 0.94351 0.96893 0.92614 1.22203 0.98794 0.98117 0.82670 1.21821 0.95682 1.00766 0.97595 1.21233 0.94965 0.99931 0.93619 0.90826 1.20885 0.96821 0.93517 0.85789 1.42538 1.65268 1.29108 1.01506 1.19589 1.26853 1.05963 0.85292 0.91165 1.25457 1.01672 0.97974 1.01193 1.69785 1.44286 1.18459 1.29088 0.85231 0.78012 0.76797 0.80280 1.21583 1.22105 1.19692 0.91115 0.92640 0.91822 0.89108 0.89379 0.80745 0.78766 0.81493 0.88795 0.88603 0.91338 0.92649 0.95504 0.97395 0.79132 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.81 71.98 0.63 -2.41 16 2 C -0.09 -2.04 2.42 -10.71 -0.03 -2.07 16 3 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 4 C 0.12 2.51 5.72 86.36 0.49 3.00 16 5 N -0.60 -12.82 2.98 -822.25 -2.45 -15.27 16 6 C 0.57 13.44 7.34 86.78 0.64 14.08 16 7 O -0.56 -16.70 16.36 -3.89 -0.06 -16.77 16 8 C -0.18 -3.51 5.13 -20.00 -0.10 -3.61 16 9 C 0.15 3.00 10.81 85.04 0.92 3.92 16 10 N -0.48 -9.23 10.35 -194.67 -2.01 -11.25 16 11 C 0.14 2.08 10.97 84.72 0.93 3.01 16 12 C -0.10 -1.49 6.34 22.38 0.14 -1.35 16 13 Cl -0.04 -0.51 28.98 -2.72 -0.08 -0.59 16 14 C -0.03 -0.52 7.32 22.75 0.17 -0.36 16 15 C 0.10 2.11 4.92 86.36 0.43 2.53 16 16 C -0.12 -3.28 5.25 30.67 0.16 -3.12 16 17 C -0.08 -2.24 1.73 -10.77 -0.02 -2.26 16 18 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 19 C 0.16 5.92 5.41 86.38 0.47 6.39 16 20 N -0.74 -36.10 5.32 -343.47 -1.83 -37.93 16 21 C -0.25 -13.45 9.99 84.03 0.84 -12.61 16 22 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 23 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 24 N -0.97 -57.37 13.06 21.65 0.28 -57.08 16 25 Si 0.97 45.46 29.55 68.60 2.03 47.49 16 26 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 27 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 28 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.05 1.33 6.30 -2.39 -0.02 1.32 16 31 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.09 2.00 7.00 -2.39 -0.02 1.99 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.18 3.21 8.06 -2.91 -0.02 3.19 16 35 H 0.20 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.17 2.26 6.68 -2.91 -0.02 2.24 16 37 H 0.09 1.62 8.13 -2.39 -0.02 1.60 16 38 H 0.10 1.75 4.76 -2.38 -0.01 1.74 16 39 H 0.07 2.21 7.15 -2.38 -0.02 2.20 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.03 1.03 6.14 -2.39 -0.01 1.01 16 42 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.38 19.13 6.84 -92.71 -0.63 18.50 16 44 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -66.76 367.83 2.41 -64.35 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.40 Total: 25.39 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 6.14 Total: 1.66 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -6.01 Total: -121.53 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.06 Total: -16.77 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.08 Total: -0.59 kcal Total: -66.76 2.41 -64.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185293656.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.032 kcal (2) G-P(sol) polarization free energy of solvation -66.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds