Wall clock time and date at job start Tue Mar 31 2020 20:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.49997 * 2 1 4 4 C 1.52767 * 109.35824 * 120.09668 * 2 1 3 5 5 N 1.46924 * 109.01047 * 65.49681 * 4 2 1 6 6 C 1.34773 * 120.63186 * 233.58448 * 5 4 2 7 7 O 1.21554 * 119.99683 * 5.45420 * 6 5 4 8 8 C 1.47847 * 119.99831 * 185.72311 * 6 5 4 9 9 C 1.39565 * 120.55219 * 220.39528 * 8 6 5 10 10 N 1.31656 * 120.59153 * 179.68671 * 9 8 6 11 11 C 1.31950 * 121.89300 * 0.63090 * 10 9 8 12 12 C 1.38423 * 121.06275 * 359.65687 * 11 10 9 13 13 Cl 1.73605 * 120.35956 * 179.97438 * 12 11 10 14 14 C 1.38512 * 119.28036 * 0.02562 * 12 11 10 15 15 C 1.46928 * 118.73683 * 53.30949 * 5 4 2 16 16 C 1.53199 * 108.77501 * 306.64597 * 15 5 4 17 17 C 1.53037 * 109.50012 * 239.93465 * 2 1 3 18 18 H 1.08998 * 109.46235 * 181.39561 * 17 2 1 19 19 C 1.53003 * 109.46033 * 61.43386 * 17 2 1 20 20 N 1.46494 * 109.47115 * 174.93262 * 19 17 2 21 21 C 1.36938 * 120.00299 * 180.02562 * 20 19 17 22 22 H 1.08006 * 119.99430 * 0.02562 * 21 20 19 23 23 C 1.38806 * 120.00422 * 180.02562 * 21 20 19 24 24 N 1.31627 * 120.00057 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00047 * 0.02562 * 23 21 20 26 26 H 1.48491 * 109.47540 * 89.99948 * 25 23 21 27 27 H 1.48500 * 109.47288 * 210.00227 * 25 23 21 28 28 H 1.48505 * 109.47135 * 329.99393 * 25 23 21 29 29 H 1.08993 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47307 * 300.06824 * 1 2 3 31 31 H 1.09007 * 109.46791 * 60.06655 * 1 2 3 32 32 H 1.09007 * 109.50866 * 305.61584 * 4 2 1 33 33 H 1.09005 * 109.43063 * 185.33847 * 4 2 1 34 34 H 1.08002 * 119.70133 * 359.97438 * 9 8 6 35 35 H 1.07999 * 119.46576 * 179.67907 * 11 10 9 36 36 H 1.08001 * 120.86489 * 180.02562 * 14 12 11 37 37 H 1.09003 * 109.58596 * 66.43003 * 15 5 4 38 38 H 1.08997 * 109.58764 * 186.85321 * 15 5 4 39 39 H 1.08997 * 109.49199 * 174.58792 * 16 15 5 40 40 H 1.08998 * 109.49593 * 294.64654 * 16 15 5 41 41 H 1.09001 * 109.47014 * 294.93500 * 19 17 2 42 42 H 1.09004 * 109.47030 * 54.93479 * 19 17 2 43 43 H 0.96995 * 120.00222 * 0.02562 * 20 19 17 44 44 H 0.96995 * 119.99793 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0364 -0.7228 1.2470 5 7 1.6515 -2.1385 1.1690 6 6 0.9739 -2.7225 2.1771 7 8 0.5890 -2.0552 3.1174 8 6 0.7040 -4.1757 2.1422 9 6 -0.5308 -4.6780 2.5553 10 7 -0.7742 -5.9714 2.5187 11 6 0.1304 -6.8396 2.1074 12 6 1.3814 -6.4224 1.6868 13 17 2.5579 -7.5806 1.1498 14 6 1.6848 -5.0710 1.7001 15 6 2.0139 -2.9041 -0.0315 16 6 1.5030 -2.1554 -1.2666 17 6 2.0408 -0.7227 -1.2485 18 1 3.1305 -0.7441 -1.2354 19 6 1.5607 0.0177 -2.4984 20 7 2.1481 -0.6019 -3.6888 21 6 1.8603 -0.1051 -4.9320 22 1 1.2005 0.7438 -5.0348 23 6 2.4164 -0.6925 -6.0601 24 7 2.1393 -0.2153 -7.2550 25 14 3.5569 -2.1611 -5.8823 26 1 2.7612 -3.4141 -5.9267 27 1 4.5417 -2.1605 -6.9938 28 1 4.2748 -2.0763 -4.5851 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5149 0.8893 31 1 -0.3633 0.5128 -0.8906 32 1 1.5925 -0.2718 2.1346 33 1 3.1222 -0.6414 1.2974 34 1 -1.2953 -3.9993 2.9036 35 1 -0.1095 -7.8926 2.0983 36 1 2.6528 -4.7172 1.3771 37 1 3.0979 -3.0043 -0.0875 38 1 1.5554 -3.8919 0.0127 39 1 1.8481 -2.6622 -2.1678 40 1 0.4133 -2.1356 -1.2550 41 1 0.4738 -0.0379 -2.5586 42 1 1.8686 1.0619 -2.4428 43 1 2.7409 -1.3640 -3.5965 44 1 2.5276 -0.6260 -8.0433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185293657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:15 Heat of formation + Delta-G solvation = 11.621420 kcal Electronic energy + Delta-G solvation = -27202.126254 eV Core-core repulsion = 23373.741054 eV Total energy + Delta-G solvation = -3828.385200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.38900 -40.01409 -38.24048 -37.14041 -35.31989 -34.04755 -32.79081 -31.94905 -31.58352 -30.77889 -27.43530 -27.20615 -25.03093 -24.25517 -23.49092 -23.06728 -21.46215 -20.57156 -18.81914 -18.06364 -17.62768 -17.40744 -17.14873 -16.31113 -15.71678 -15.49171 -15.14908 -14.65834 -14.46046 -14.26623 -14.16993 -13.92947 -13.80848 -13.56736 -13.04744 -12.99591 -12.81741 -12.55876 -12.50374 -12.40650 -11.76886 -11.73196 -11.59840 -11.45202 -11.13159 -10.89333 -10.68364 -10.60566 -10.43394 -10.24703 -10.24143 -10.12536 -9.83843 -9.62022 -9.52500 -8.92662 -8.85256 -7.26056 -5.80235 -3.15725 0.11032 0.43212 1.44317 2.30920 2.60310 3.14212 3.31667 3.33362 3.40814 3.78368 3.98597 4.07423 4.18339 4.52720 4.54638 4.59404 4.71001 4.76247 4.82744 4.89543 5.04239 5.20217 5.22387 5.30847 5.34389 5.49604 5.54576 5.58719 5.62467 5.66191 5.75219 5.82327 5.85869 6.01733 6.09273 6.21624 6.23700 6.26905 6.43501 6.64176 6.76837 7.02800 7.22366 7.75558 7.96315 8.38887 9.17915 9.90079 10.09753 11.38398 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.011060 B = 0.003465 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.064113 B = 8077.822599 C = 9894.752001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.086 0.914 4 C 0.117 3.883 5 N -0.595 5.595 6 C 0.566 3.434 7 O -0.530 6.530 8 C -0.166 4.166 9 C 0.157 3.843 10 N -0.468 5.468 11 C 0.134 3.866 12 C -0.097 4.097 13 Cl -0.044 7.044 14 C -0.036 4.036 15 C 0.095 3.905 16 C -0.130 4.130 17 C -0.093 4.093 18 H 0.072 0.928 19 C 0.163 3.837 20 N -0.755 5.755 21 C -0.244 4.244 22 H 0.089 0.911 23 C 0.004 3.996 24 N -0.934 5.934 25 Si 0.883 3.117 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.278 1.278 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.173 0.827 35 H 0.171 0.829 36 H 0.154 0.846 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.030 0.970 42 H 0.027 0.973 43 H 0.359 0.641 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.565 -11.664 22.200 25.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.105 0.895 4 C -0.005 4.005 5 N -0.328 5.328 6 C 0.353 3.647 7 O -0.407 6.407 8 C -0.171 4.171 9 C 0.000 4.000 10 N -0.176 5.176 11 C -0.024 4.024 12 C -0.126 4.126 13 Cl -0.015 7.015 14 C -0.063 4.063 15 C -0.028 4.028 16 C -0.168 4.168 17 C -0.112 4.112 18 H 0.090 0.910 19 C 0.036 3.964 20 N -0.401 5.401 21 C -0.373 4.373 22 H 0.107 0.893 23 C -0.192 4.192 24 N -0.582 5.582 25 Si 0.714 3.286 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.204 1.204 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.190 0.810 35 H 0.188 0.812 36 H 0.172 0.828 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.048 0.952 42 H 0.044 0.956 43 H 0.192 0.808 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.574 -11.553 22.730 25.546 hybrid contribution 1.914 -0.913 -0.594 2.202 sum 0.340 -12.466 22.137 25.408 Atomic orbital electron populations 1.21878 0.94640 1.01979 1.01850 1.21394 0.96936 0.99665 0.93775 0.89539 1.21691 0.99659 0.79431 0.99702 1.47998 1.55197 1.11939 1.17641 1.17930 0.78041 0.86113 0.82635 1.90808 1.51401 1.64196 1.34304 1.21007 0.96753 0.94831 1.04501 1.23088 0.94409 0.91672 0.90879 1.67955 1.32490 1.02908 1.14232 1.23065 0.87066 1.00725 0.91540 1.22005 0.93726 0.91490 1.05391 1.98416 1.56760 1.58011 1.88332 1.21849 1.00141 0.90902 0.93414 1.22203 1.00591 0.95383 0.84583 1.22000 1.01970 0.96109 0.96685 1.21374 1.00279 0.94541 0.95025 0.90969 1.20692 0.96342 0.94892 0.84514 1.42728 1.57273 1.37490 1.02637 1.19062 1.24105 1.12292 0.81886 0.89274 1.24672 1.00247 0.99127 0.95121 1.69701 1.48333 1.43153 0.97055 0.86568 0.81282 0.83861 0.76934 1.21065 1.21707 1.20394 0.92724 0.93025 0.91713 0.88713 0.91138 0.80956 0.81197 0.82807 0.90727 0.89735 0.89927 0.90757 0.95185 0.95551 0.80773 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.38 37.16 0.31 -1.40 16 2 C -0.10 -1.10 2.72 -90.72 -0.25 -1.34 16 3 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 4 C 0.12 1.20 5.80 -3.93 -0.02 1.18 16 5 N -0.60 -6.18 2.42 -174.13 -0.42 -6.60 16 6 C 0.57 6.46 7.34 -12.33 -0.09 6.36 16 7 O -0.53 -7.53 16.37 5.32 0.09 -7.45 16 8 C -0.17 -1.61 5.11 -104.82 -0.54 -2.14 16 9 C 0.16 1.51 10.82 -17.13 -0.19 1.33 16 10 N -0.47 -4.50 10.34 -12.88 -0.13 -4.63 16 11 C 0.13 1.06 10.97 -17.43 -0.19 0.87 16 12 C -0.10 -0.77 6.34 -39.41 -0.25 -1.02 16 13 Cl -0.04 -0.33 28.99 -51.86 -1.50 -1.83 16 14 C -0.04 -0.30 7.33 -38.83 -0.28 -0.59 16 15 C 0.09 0.92 4.94 -3.71 -0.02 0.90 16 16 C -0.13 -1.61 4.90 -26.61 -0.13 -1.74 16 17 C -0.09 -1.24 1.96 -90.58 -0.18 -1.42 16 18 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 19 C 0.16 2.91 5.18 -4.04 -0.02 2.89 16 20 N -0.76 -17.08 5.12 -59.91 -0.31 -17.38 16 21 C -0.24 -6.75 10.47 -15.06 -0.16 -6.91 16 22 H 0.09 2.67 8.06 -52.48 -0.42 2.24 16 23 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 24 N -0.93 -29.07 13.97 55.49 0.78 -28.29 16 25 Si 0.88 21.48 27.74 -169.99 -4.71 16.77 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 29 H 0.05 0.67 5.97 -51.93 -0.31 0.36 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.81 6.58 -51.93 -0.34 0.47 16 32 H 0.09 1.03 7.00 -51.92 -0.36 0.67 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.15 1.09 6.72 -52.49 -0.35 0.73 16 37 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 38 H 0.08 0.75 4.78 -51.93 -0.25 0.50 16 39 H 0.08 1.15 7.15 -51.93 -0.37 0.78 16 40 H 0.07 0.97 6.34 -51.93 -0.33 0.64 16 41 H 0.03 0.56 6.74 -51.93 -0.35 0.21 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.36 7.83 4.71 -40.82 -0.19 7.64 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -32.57 360.75 -8.71 -41.28 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.83 Total: 5.71 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -2.10 Total: -3.01 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.09 Total: -56.91 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: 0.09 Total: -7.45 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.77 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.50 Total: -1.83 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.57 -8.71 -41.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185293657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.903 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds