Wall clock time and date at job start Tue Mar 31 2020 20:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.49997 * 2 1 4 4 C 1.52767 * 109.35824 * 120.09668 * 2 1 3 5 5 N 1.46924 * 109.01047 * 65.49681 * 4 2 1 6 6 C 1.34773 * 120.63186 * 233.58448 * 5 4 2 7 7 O 1.21554 * 119.99683 * 5.45420 * 6 5 4 8 8 C 1.47847 * 119.99831 * 185.72311 * 6 5 4 9 9 C 1.39565 * 120.55219 * 220.39528 * 8 6 5 10 10 N 1.31656 * 120.59153 * 179.68671 * 9 8 6 11 11 C 1.31950 * 121.89300 * 0.63090 * 10 9 8 12 12 C 1.38423 * 121.06275 * 359.65687 * 11 10 9 13 13 Cl 1.73605 * 120.35956 * 179.97438 * 12 11 10 14 14 C 1.38512 * 119.28036 * 0.02562 * 12 11 10 15 15 C 1.46928 * 118.73683 * 53.30949 * 5 4 2 16 16 C 1.53199 * 108.77501 * 306.64597 * 15 5 4 17 17 C 1.53037 * 109.50012 * 239.93465 * 2 1 3 18 18 H 1.08998 * 109.46235 * 181.39561 * 17 2 1 19 19 C 1.53003 * 109.46033 * 61.43386 * 17 2 1 20 20 N 1.46494 * 109.47115 * 174.93262 * 19 17 2 21 21 C 1.36938 * 120.00299 * 180.02562 * 20 19 17 22 22 H 1.08006 * 119.99430 * 0.02562 * 21 20 19 23 23 C 1.38806 * 120.00422 * 180.02562 * 21 20 19 24 24 N 1.31627 * 120.00057 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00047 * 0.02562 * 23 21 20 26 26 H 1.48491 * 109.47540 * 89.99948 * 25 23 21 27 27 H 1.48500 * 109.47288 * 210.00227 * 25 23 21 28 28 H 1.48505 * 109.47135 * 329.99393 * 25 23 21 29 29 H 1.08993 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47307 * 300.06824 * 1 2 3 31 31 H 1.09007 * 109.46791 * 60.06655 * 1 2 3 32 32 H 1.09007 * 109.50866 * 305.61584 * 4 2 1 33 33 H 1.09005 * 109.43063 * 185.33847 * 4 2 1 34 34 H 1.08002 * 119.70133 * 359.97438 * 9 8 6 35 35 H 1.07999 * 119.46576 * 179.67907 * 11 10 9 36 36 H 1.08001 * 120.86489 * 180.02562 * 14 12 11 37 37 H 1.09003 * 109.58596 * 66.43003 * 15 5 4 38 38 H 1.08997 * 109.58764 * 186.85321 * 15 5 4 39 39 H 1.08997 * 109.49199 * 174.58792 * 16 15 5 40 40 H 1.08998 * 109.49593 * 294.64654 * 16 15 5 41 41 H 1.09001 * 109.47014 * 294.93500 * 19 17 2 42 42 H 1.09004 * 109.47030 * 54.93479 * 19 17 2 43 43 H 0.96995 * 120.00222 * 0.02562 * 20 19 17 44 44 H 0.96995 * 119.99793 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0364 -0.7228 1.2470 5 7 1.6515 -2.1385 1.1690 6 6 0.9739 -2.7225 2.1771 7 8 0.5890 -2.0552 3.1174 8 6 0.7040 -4.1757 2.1422 9 6 -0.5308 -4.6780 2.5553 10 7 -0.7742 -5.9714 2.5187 11 6 0.1304 -6.8396 2.1074 12 6 1.3814 -6.4224 1.6868 13 17 2.5579 -7.5806 1.1498 14 6 1.6848 -5.0710 1.7001 15 6 2.0139 -2.9041 -0.0315 16 6 1.5030 -2.1554 -1.2666 17 6 2.0408 -0.7227 -1.2485 18 1 3.1305 -0.7441 -1.2354 19 6 1.5607 0.0177 -2.4984 20 7 2.1481 -0.6019 -3.6888 21 6 1.8603 -0.1051 -4.9320 22 1 1.2005 0.7438 -5.0348 23 6 2.4164 -0.6925 -6.0601 24 7 2.1393 -0.2153 -7.2550 25 14 3.5569 -2.1611 -5.8823 26 1 2.7612 -3.4141 -5.9267 27 1 4.5417 -2.1605 -6.9938 28 1 4.2748 -2.0763 -4.5851 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5149 0.8893 31 1 -0.3633 0.5128 -0.8906 32 1 1.5925 -0.2718 2.1346 33 1 3.1222 -0.6414 1.2974 34 1 -1.2953 -3.9993 2.9036 35 1 -0.1095 -7.8926 2.0983 36 1 2.6528 -4.7172 1.3771 37 1 3.0979 -3.0043 -0.0875 38 1 1.5554 -3.8919 0.0127 39 1 1.8481 -2.6622 -2.1678 40 1 0.4133 -2.1356 -1.2550 41 1 0.4738 -0.0379 -2.5586 42 1 1.8686 1.0619 -2.4428 43 1 2.7409 -1.3640 -3.5965 44 1 2.5276 -0.6260 -8.0433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185293657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:11 Heat of formation + Delta-G solvation = -8.563065 kcal Electronic energy + Delta-G solvation = -27203.001519 eV Core-core repulsion = 23373.741054 eV Total energy + Delta-G solvation = -3829.260465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.16150 -40.81635 -39.24575 -37.73798 -36.75236 -35.22198 -33.91958 -33.12924 -32.34647 -32.23856 -28.81834 -28.09047 -25.99591 -25.02542 -24.81944 -24.08999 -22.87081 -21.50830 -20.08390 -19.35220 -18.61468 -18.27700 -17.87406 -17.18254 -16.72800 -16.53631 -16.18940 -16.02803 -15.54656 -15.35717 -15.22822 -14.95855 -14.78562 -14.58500 -14.52434 -14.01899 -13.75332 -13.68678 -13.58000 -13.25328 -13.14461 -12.87823 -12.71347 -12.52489 -12.34325 -12.19004 -12.04857 -11.84843 -11.60837 -11.56958 -11.36103 -11.29358 -10.97393 -10.89389 -10.61824 -10.17239 -9.71816 -9.26752 -8.01559 -5.35035 -0.55804 -0.21098 0.83679 1.37613 1.42988 1.48727 1.50460 1.81066 2.45614 2.49955 3.08939 3.30024 3.31726 3.48643 3.52794 3.54892 3.70758 3.77536 3.89457 4.00812 4.08890 4.11278 4.22058 4.34445 4.41236 4.61812 4.63757 4.65939 4.68025 4.74918 4.78773 4.81278 4.95681 5.04017 5.13122 5.16175 5.16838 5.23469 5.28641 5.46253 5.58006 5.77183 6.19750 6.22453 6.56730 6.91264 7.10048 7.85836 8.06295 9.20374 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.011060 B = 0.003465 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.064113 B = 8077.822599 C = 9894.752001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.095 0.905 4 C 0.120 3.880 5 N -0.592 5.592 6 C 0.568 3.432 7 O -0.563 6.563 8 C -0.175 4.175 9 C 0.150 3.850 10 N -0.485 5.485 11 C 0.136 3.864 12 C -0.097 4.097 13 Cl -0.036 7.036 14 C -0.031 4.031 15 C 0.101 3.899 16 C -0.129 4.129 17 C -0.082 4.082 18 H 0.083 0.917 19 C 0.160 3.840 20 N -0.754 5.754 21 C -0.235 4.235 22 H 0.051 0.949 23 C -0.067 4.067 24 N -0.987 5.987 25 Si 0.956 3.044 26 H -0.276 1.276 27 H -0.298 1.298 28 H -0.244 1.244 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.174 0.826 35 H 0.194 0.806 36 H 0.170 0.830 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.021 0.979 42 H 0.020 0.980 43 H 0.367 0.633 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.233 -13.835 24.010 27.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.114 0.886 4 C -0.002 4.002 5 N -0.324 5.324 6 C 0.356 3.644 7 O -0.443 6.443 8 C -0.181 4.181 9 C -0.007 4.007 10 N -0.193 5.193 11 C -0.022 4.022 12 C -0.126 4.126 13 Cl -0.007 7.007 14 C -0.058 4.058 15 C -0.021 4.021 16 C -0.167 4.167 17 C -0.101 4.101 18 H 0.101 0.899 19 C 0.034 3.966 20 N -0.401 5.401 21 C -0.367 4.367 22 H 0.069 0.931 23 C -0.258 4.258 24 N -0.638 5.638 25 Si 0.783 3.217 26 H -0.202 1.202 27 H -0.225 1.225 28 H -0.168 1.168 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.191 0.809 35 H 0.211 0.789 36 H 0.188 0.812 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.201 0.799 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.225 -13.724 24.589 28.161 hybrid contribution 1.252 -0.175 -1.165 1.719 sum 1.477 -13.899 23.424 27.278 Atomic orbital electron populations 1.21831 0.95312 1.01416 1.01448 1.21344 0.96261 1.00169 0.93290 0.88633 1.21691 1.00794 0.79166 0.98526 1.48030 1.54701 1.12054 1.17566 1.18120 0.77375 0.86634 0.82249 1.90791 1.52766 1.65119 1.35646 1.20858 0.97305 0.94062 1.05849 1.23161 0.94678 0.91941 0.90950 1.67989 1.33265 1.02996 1.15037 1.23475 0.86814 1.01566 0.90334 1.22020 0.93863 0.91529 1.05180 1.98424 1.56415 1.57671 1.88205 1.21992 1.00303 0.90841 0.92649 1.22237 1.01985 0.95170 0.82715 1.21946 1.01374 0.95631 0.97735 1.21265 1.00777 0.94764 0.93305 0.89918 1.20837 0.95654 0.95016 0.85065 1.42682 1.57513 1.37750 1.02113 1.19030 1.22566 1.10831 0.84230 0.93124 1.25565 1.02737 1.02925 0.94536 1.69905 1.50374 1.45393 0.98118 0.85394 0.78815 0.79479 0.78057 1.20174 1.22545 1.16811 0.93374 0.92404 0.93098 0.89258 0.89026 0.80940 0.78934 0.81248 0.88327 0.88619 0.91000 0.91866 0.96103 0.96195 0.79862 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.38 71.98 0.60 -2.63 16 2 C -0.09 -1.86 2.72 -10.86 -0.03 -1.88 16 3 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.12 2.14 5.80 86.22 0.50 2.64 16 5 N -0.59 -10.79 2.42 -823.10 -1.99 -12.78 16 6 C 0.57 12.02 7.34 86.79 0.64 12.65 16 7 O -0.56 -15.53 16.37 -3.88 -0.06 -15.60 16 8 C -0.18 -3.10 5.11 -20.00 -0.10 -3.20 16 9 C 0.15 2.74 10.82 85.04 0.92 3.66 16 10 N -0.48 -8.62 10.34 -194.67 -2.01 -10.63 16 11 C 0.14 1.86 10.97 84.72 0.93 2.79 16 12 C -0.10 -1.28 6.34 22.38 0.14 -1.14 16 13 Cl -0.04 -0.44 28.99 -2.72 -0.08 -0.51 16 14 C -0.03 -0.44 7.33 22.75 0.17 -0.27 16 15 C 0.10 1.62 4.94 86.36 0.43 2.05 16 16 C -0.13 -2.91 4.90 30.67 0.15 -2.76 16 17 C -0.08 -2.01 1.96 -10.77 -0.02 -2.03 16 18 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 19 C 0.16 5.64 5.18 86.38 0.45 6.09 16 20 N -0.75 -33.38 5.12 -343.45 -1.76 -35.14 16 21 C -0.24 -13.26 10.47 84.03 0.88 -12.38 16 22 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 23 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 24 N -0.99 -63.03 13.97 21.65 0.30 -62.73 16 25 Si 0.96 43.66 27.74 68.60 1.90 45.56 16 26 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 27 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 28 H -0.24 -9.68 6.52 99.48 0.65 -9.03 16 29 H 0.05 1.15 5.97 -2.39 -0.01 1.13 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.27 6.58 -2.38 -0.02 1.26 16 32 H 0.09 1.77 7.00 -2.38 -0.02 1.75 16 33 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 35 H 0.19 1.59 8.06 -2.91 -0.02 1.57 16 36 H 0.17 1.76 6.72 -2.91 -0.02 1.74 16 37 H 0.10 1.20 8.13 -2.39 -0.02 1.18 16 38 H 0.10 1.37 4.78 -2.39 -0.01 1.36 16 39 H 0.07 1.81 7.15 -2.39 -0.02 1.79 16 40 H 0.06 1.57 6.34 -2.39 -0.02 1.55 16 41 H 0.02 0.78 6.74 -2.39 -0.02 0.77 16 42 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.37 15.06 4.71 -92.71 -0.44 14.62 16 44 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -71.79 360.75 2.96 -68.83 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.54 Total: 22.81 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 6.12 Total: 0.19 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -5.46 Total: -121.28 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.06 Total: -15.60 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.90 Total: 45.56 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.08 Total: -0.51 kcal Total: -71.79 2.96 -68.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185293657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.268 kcal (2) G-P(sol) polarization free energy of solvation -71.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds