Wall clock time and date at job start Tue Mar 31 2020 20:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.52603 * 2 1 4 4 C 1.53197 * 109.50016 * 239.91570 * 2 1 3 5 5 N 1.46928 * 108.77621 * 185.41119 * 4 2 1 6 6 C 1.34776 * 120.62868 * 233.58881 * 5 4 2 7 7 O 1.21529 * 119.99737 * 172.20112 * 6 5 4 8 8 C 1.48110 * 120.00280 * 352.19681 * 6 5 4 9 9 C 1.39344 * 119.70699 * 170.52567 * 8 6 5 10 10 C 1.38523 * 119.07855 * 179.97438 * 9 8 6 11 11 C 1.38776 * 118.47546 * 359.97438 * 10 9 8 12 12 Cl 1.73599 * 120.33621 * 180.02562 * 11 10 9 13 13 C 1.38722 * 119.32105 * 359.97438 * 11 10 9 14 14 N 1.31482 * 120.88330 * 359.73978 * 13 11 10 15 15 C 1.46924 * 118.73785 * 53.61331 * 5 4 2 16 16 C 1.53200 * 108.77230 * 306.38929 * 15 5 4 17 17 C 1.53033 * 109.31311 * 54.63455 * 16 15 5 18 18 H 1.09008 * 109.45804 * 58.64529 * 17 16 15 19 19 C 1.52999 * 109.45925 * 178.61173 * 17 16 15 20 20 N 1.46499 * 109.47329 * 295.00245 * 19 17 16 21 21 C 1.36934 * 120.00136 * 179.97438 * 20 19 17 22 22 H 1.07998 * 119.99957 * 359.97438 * 21 20 19 23 23 C 1.38817 * 120.00182 * 180.02562 * 21 20 19 24 24 N 1.31614 * 119.99700 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00048 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47662 * 269.99902 * 25 23 21 27 27 H 1.48500 * 109.47389 * 30.00333 * 25 23 21 28 28 H 1.48505 * 109.47038 * 150.00274 * 25 23 21 29 29 H 1.08995 * 109.47271 * 299.92301 * 1 2 3 30 30 H 1.08999 * 109.47190 * 59.92275 * 1 2 3 31 31 H 1.09007 * 109.46770 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.58139 * 65.62796 * 4 2 1 33 33 H 1.08995 * 109.58883 * 305.20401 * 4 2 1 34 34 H 1.08007 * 120.46227 * 359.97438 * 9 8 6 35 35 H 1.07993 * 120.76371 * 179.97438 * 10 9 8 36 36 H 1.08004 * 119.55282 * 180.02562 * 13 11 10 37 37 H 1.08998 * 109.58627 * 186.60732 * 15 5 4 38 38 H 1.08993 * 109.70657 * 66.24305 * 15 5 4 39 39 H 1.08999 * 109.49691 * 294.67791 * 16 15 5 40 40 H 1.08998 * 109.51995 * 174.60716 * 16 15 5 41 41 H 1.09002 * 109.47479 * 175.00116 * 19 17 16 42 42 H 1.08999 * 109.46944 * 55.00319 * 19 17 16 43 43 H 0.97001 * 120.00312 * 359.97438 * 20 19 17 44 44 H 0.97002 * 120.00555 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5047 -0.8291 -1.1695 6 6 4.2811 -0.3864 -2.1783 7 8 5.4883 -0.3475 -2.0438 8 6 3.6632 0.0526 -3.4507 9 6 4.4430 0.6915 -4.4127 10 6 3.8518 1.0962 -5.5983 11 6 2.4990 0.8472 -5.7818 12 17 1.7092 1.3330 -7.2494 13 6 1.7845 0.2051 -4.7810 14 7 2.3733 -0.1729 -3.6678 15 6 4.1053 -1.4267 0.0308 16 6 3.5708 -0.6949 1.2660 17 6 2.0408 -0.7230 1.2483 18 1 1.6967 -1.7573 1.2351 19 6 1.5037 -0.0231 2.4983 20 7 1.8917 -0.7838 3.6887 21 6 1.5208 -0.3460 4.9320 22 1 0.9426 0.5603 5.0351 23 6 1.8889 -1.0665 6.0600 24 7 2.5948 -2.1702 5.9345 25 14 1.3836 -0.4688 7.7561 26 1 2.4318 0.4341 8.2955 27 1 0.0979 0.2679 7.6587 28 1 1.2193 -1.6335 8.6627 29 1 -0.3633 0.5126 0.8906 30 1 -0.3633 0.5150 -0.8893 31 1 -0.3633 -1.0278 -0.0005 32 1 1.7638 -0.1580 -2.1388 33 1 1.6053 -1.7216 -1.2980 34 1 5.4937 0.8688 -4.2364 35 1 4.4304 1.5940 -6.3623 36 1 0.7316 0.0091 -4.9200 37 1 5.1896 -1.3245 -0.0137 38 1 3.8398 -2.4822 0.0881 39 1 3.9159 0.3389 1.2541 40 1 3.9334 -1.1890 2.1674 41 1 0.4166 0.0357 2.4431 42 1 1.9193 0.9827 2.5585 43 1 2.4113 -1.5977 3.5962 44 1 2.8575 -2.4804 5.0537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185525622.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:31 Heat of formation + Delta-G solvation = 17.617309 kcal Electronic energy + Delta-G solvation = -26781.161756 eV Core-core repulsion = 22953.036558 eV Total energy + Delta-G solvation = -3828.125199 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.35994 -39.71371 -38.09348 -37.23648 -35.22856 -33.66449 -33.21703 -32.31496 -31.55162 -30.16009 -26.94239 -26.57989 -25.02876 -24.33822 -23.38830 -22.42955 -21.52122 -20.44814 -19.53679 -17.86937 -17.66825 -17.21198 -16.91039 -16.02504 -15.70634 -15.33592 -15.05372 -14.58795 -14.43726 -14.26813 -14.22652 -13.75475 -13.55549 -13.35912 -13.16675 -12.91814 -12.70906 -12.54849 -12.42065 -12.11165 -11.81896 -11.74183 -11.59781 -10.89092 -10.71528 -10.68926 -10.59968 -10.55828 -10.42019 -10.27137 -10.07826 -9.99076 -9.58525 -9.33328 -9.09361 -8.83087 -8.61106 -6.94646 -6.07113 -3.05837 -0.05892 0.49512 1.35889 2.30176 2.74584 3.25204 3.53330 3.58422 3.60155 3.72272 4.04377 4.11799 4.26272 4.45526 4.68976 4.86075 4.97006 4.99703 5.08866 5.14721 5.21240 5.27769 5.40105 5.49411 5.59397 5.64724 5.67175 5.73814 5.87619 5.90881 5.93299 6.01892 6.13074 6.21383 6.24627 6.32484 6.43781 6.47705 6.64799 6.79596 6.89883 6.98262 7.29336 7.84813 7.90764 8.79374 9.27674 10.13900 10.29436 11.41696 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.025349 B = 0.002261 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.333559 B =12378.935031 C =13151.204665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.069 0.931 4 C 0.080 3.920 5 N -0.583 5.583 6 C 0.566 3.434 7 O -0.535 6.535 8 C 0.089 3.911 9 C -0.098 4.098 10 C -0.069 4.069 11 C -0.073 4.073 12 Cl -0.047 7.047 13 C 0.108 3.892 14 N -0.431 5.431 15 C 0.108 3.892 16 C -0.123 4.123 17 C -0.091 4.091 18 H 0.070 0.930 19 C 0.162 3.838 20 N -0.743 5.743 21 C -0.329 4.329 22 H 0.063 0.937 23 C -0.047 4.047 24 N -0.946 5.946 25 Si 1.082 2.918 26 H -0.296 1.296 27 H -0.295 1.295 28 H -0.288 1.288 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.141 0.859 33 H 0.066 0.934 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.175 0.825 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.025 0.975 42 H 0.016 0.984 43 H 0.366 0.634 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.161 5.960 -28.830 29.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 H 0.087 0.913 4 C -0.042 4.042 5 N -0.313 5.313 6 C 0.352 3.648 7 O -0.412 6.412 8 C -0.048 4.048 9 C -0.119 4.119 10 C -0.096 4.096 11 C -0.102 4.102 12 Cl -0.018 7.018 13 C -0.051 4.051 14 N -0.143 5.143 15 C -0.014 4.014 16 C -0.161 4.161 17 C -0.110 4.110 18 H 0.088 0.912 19 C 0.035 3.965 20 N -0.389 5.389 21 C -0.460 4.460 22 H 0.081 0.919 23 C -0.245 4.245 24 N -0.592 5.592 25 Si 0.914 3.086 26 H -0.224 1.224 27 H -0.222 1.222 28 H -0.214 1.214 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.158 0.842 33 H 0.085 0.915 34 H 0.177 0.823 35 H 0.172 0.828 36 H 0.192 0.808 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.042 0.958 42 H 0.034 0.966 43 H 0.199 0.801 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.099 5.455 -26.543 27.120 hybrid contribution 0.335 0.598 -2.369 2.466 sum -0.764 6.052 -28.912 29.548 Atomic orbital electron populations 1.21798 0.94358 1.02149 1.01880 1.21501 0.96128 0.99752 0.94496 0.91280 1.23063 0.77694 1.02349 1.01089 1.48001 1.07978 1.58123 1.17181 1.17782 0.86137 0.78211 0.82656 1.90796 1.13592 1.55374 1.81487 1.21434 0.89946 0.97644 0.95814 1.22151 1.02440 0.95473 0.91840 1.21612 0.92807 0.97384 0.97756 1.22368 0.94591 1.02166 0.91039 1.98412 1.79916 1.89962 1.33481 1.23064 1.01140 0.93569 0.87329 1.67888 1.09951 1.17435 1.18989 1.21811 0.99404 0.96755 0.83416 1.21901 0.95880 1.01228 0.97086 1.21385 0.94766 1.00108 0.94783 0.91156 1.20690 0.96634 0.93921 0.85245 1.42396 1.66086 1.28613 1.01802 1.20057 1.31953 1.08703 0.85259 0.91879 1.25757 0.99672 0.96671 1.02375 1.70848 1.40090 1.23120 1.25093 0.83195 0.75207 0.75059 0.75173 1.22372 1.22219 1.21411 0.91518 0.93002 0.92517 0.84235 0.91541 0.82306 0.82833 0.80845 0.89064 0.91099 0.91762 0.89760 0.95757 0.96619 0.80068 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.82 37.15 0.33 -1.37 16 2 C -0.10 -1.29 2.41 -90.50 -0.22 -1.51 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.08 0.95 5.16 -3.71 -0.02 0.93 16 5 N -0.58 -7.75 2.97 -173.78 -0.52 -8.27 16 6 C 0.57 7.67 7.65 -12.21 -0.09 7.58 16 7 O -0.54 -8.57 15.79 5.34 0.08 -8.49 16 8 C 0.09 0.95 6.57 -83.01 -0.55 0.40 16 9 C -0.10 -0.82 9.63 -39.07 -0.38 -1.20 16 10 C -0.07 -0.43 9.97 -39.28 -0.39 -0.83 16 11 C -0.07 -0.47 6.35 -39.20 -0.25 -0.72 16 12 Cl -0.05 -0.27 28.99 -51.86 -1.50 -1.77 16 13 C 0.11 0.76 10.98 -17.52 -0.19 0.57 16 14 N -0.43 -4.04 6.14 -9.77 -0.06 -4.10 16 15 C 0.11 1.52 6.44 -3.71 -0.02 1.49 16 16 C -0.12 -1.96 5.25 -26.61 -0.14 -2.10 16 17 C -0.09 -1.47 1.73 -90.58 -0.16 -1.62 16 18 H 0.07 1.17 8.14 -51.92 -0.42 0.74 16 19 C 0.16 3.30 5.41 -4.04 -0.02 3.28 16 20 N -0.74 -18.87 5.32 -59.91 -0.32 -19.19 16 21 C -0.33 -9.43 9.99 -15.06 -0.15 -9.58 16 22 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 23 C -0.05 -1.40 5.50 -17.43 -0.10 -1.50 16 24 N -0.95 -29.54 13.70 55.49 0.76 -28.78 16 25 Si 1.08 26.38 29.92 -169.99 -5.09 21.29 16 26 H -0.30 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H 0.07 0.88 6.29 -51.93 -0.33 0.55 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.14 1.50 4.04 -83.39 -0.34 1.17 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.16 1.23 7.67 -52.48 -0.40 0.83 16 35 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 36 H 0.17 0.79 8.06 -52.48 -0.42 0.37 16 37 H 0.09 1.34 7.00 -51.93 -0.36 0.97 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.08 1.51 7.15 -51.93 -0.37 1.14 16 41 H 0.02 0.50 6.14 -51.93 -0.32 0.18 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.37 9.43 5.68 -40.82 -0.23 9.19 16 44 H 0.25 7.80 6.77 -40.82 -0.28 7.52 16 LS Contribution 365.84 15.07 5.51 5.51 Total: -1.00 -33.62 365.84 -9.54 -43.16 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.06 Total: 6.81 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -2.35 Total: -6.18 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.13 Total: -60.33 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.08 Total: -8.49 kcal Atomic # 14 Polarization: 26.38 SS G_CDS: -5.09 Total: 21.29 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.50 Total: -1.77 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.62 -9.54 -43.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185525622.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.772 kcal (2) G-P(sol) polarization free energy of solvation -33.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds