Wall clock time and date at job start Tue Mar 31 2020 20:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.52603 * 2 1 4 4 C 1.53197 * 109.50016 * 239.91570 * 2 1 3 5 5 N 1.46928 * 108.77621 * 185.41119 * 4 2 1 6 6 C 1.34776 * 120.62868 * 233.58881 * 5 4 2 7 7 O 1.21529 * 119.99737 * 172.20112 * 6 5 4 8 8 C 1.48110 * 120.00280 * 352.19681 * 6 5 4 9 9 C 1.39344 * 119.70699 * 170.52567 * 8 6 5 10 10 C 1.38523 * 119.07855 * 179.97438 * 9 8 6 11 11 C 1.38776 * 118.47546 * 359.97438 * 10 9 8 12 12 Cl 1.73599 * 120.33621 * 180.02562 * 11 10 9 13 13 C 1.38722 * 119.32105 * 359.97438 * 11 10 9 14 14 N 1.31482 * 120.88330 * 359.73978 * 13 11 10 15 15 C 1.46924 * 118.73785 * 53.61331 * 5 4 2 16 16 C 1.53200 * 108.77230 * 306.38929 * 15 5 4 17 17 C 1.53033 * 109.31311 * 54.63455 * 16 15 5 18 18 H 1.09008 * 109.45804 * 58.64529 * 17 16 15 19 19 C 1.52999 * 109.45925 * 178.61173 * 17 16 15 20 20 N 1.46499 * 109.47329 * 295.00245 * 19 17 16 21 21 C 1.36934 * 120.00136 * 179.97438 * 20 19 17 22 22 H 1.07998 * 119.99957 * 359.97438 * 21 20 19 23 23 C 1.38817 * 120.00182 * 180.02562 * 21 20 19 24 24 N 1.31614 * 119.99700 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00048 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47662 * 269.99902 * 25 23 21 27 27 H 1.48500 * 109.47389 * 30.00333 * 25 23 21 28 28 H 1.48505 * 109.47038 * 150.00274 * 25 23 21 29 29 H 1.08995 * 109.47271 * 299.92301 * 1 2 3 30 30 H 1.08999 * 109.47190 * 59.92275 * 1 2 3 31 31 H 1.09007 * 109.46770 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.58139 * 65.62796 * 4 2 1 33 33 H 1.08995 * 109.58883 * 305.20401 * 4 2 1 34 34 H 1.08007 * 120.46227 * 359.97438 * 9 8 6 35 35 H 1.07993 * 120.76371 * 179.97438 * 10 9 8 36 36 H 1.08004 * 119.55282 * 180.02562 * 13 11 10 37 37 H 1.08998 * 109.58627 * 186.60732 * 15 5 4 38 38 H 1.08993 * 109.70657 * 66.24305 * 15 5 4 39 39 H 1.08999 * 109.49691 * 294.67791 * 16 15 5 40 40 H 1.08998 * 109.51995 * 174.60716 * 16 15 5 41 41 H 1.09002 * 109.47479 * 175.00116 * 19 17 16 42 42 H 1.08999 * 109.46944 * 55.00319 * 19 17 16 43 43 H 0.97001 * 120.00312 * 359.97438 * 20 19 17 44 44 H 0.97002 * 120.00555 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5047 -0.8291 -1.1695 6 6 4.2811 -0.3864 -2.1783 7 8 5.4883 -0.3475 -2.0438 8 6 3.6632 0.0526 -3.4507 9 6 4.4430 0.6915 -4.4127 10 6 3.8518 1.0962 -5.5983 11 6 2.4990 0.8472 -5.7818 12 17 1.7092 1.3330 -7.2494 13 6 1.7845 0.2051 -4.7810 14 7 2.3733 -0.1729 -3.6678 15 6 4.1053 -1.4267 0.0308 16 6 3.5708 -0.6949 1.2660 17 6 2.0408 -0.7230 1.2483 18 1 1.6967 -1.7573 1.2351 19 6 1.5037 -0.0231 2.4983 20 7 1.8917 -0.7838 3.6887 21 6 1.5208 -0.3460 4.9320 22 1 0.9426 0.5603 5.0351 23 6 1.8889 -1.0665 6.0600 24 7 2.5948 -2.1702 5.9345 25 14 1.3836 -0.4688 7.7561 26 1 2.4318 0.4341 8.2955 27 1 0.0979 0.2679 7.6587 28 1 1.2193 -1.6335 8.6627 29 1 -0.3633 0.5126 0.8906 30 1 -0.3633 0.5150 -0.8893 31 1 -0.3633 -1.0278 -0.0005 32 1 1.7638 -0.1580 -2.1388 33 1 1.6053 -1.7216 -1.2980 34 1 5.4937 0.8688 -4.2364 35 1 4.4304 1.5940 -6.3623 36 1 0.7316 0.0091 -4.9200 37 1 5.1896 -1.3245 -0.0137 38 1 3.8398 -2.4822 0.0881 39 1 3.9159 0.3389 1.2541 40 1 3.9334 -1.1890 2.1674 41 1 0.4166 0.0357 2.4431 42 1 1.9193 0.9827 2.5585 43 1 2.4113 -1.5977 3.5962 44 1 2.8575 -2.4804 5.0537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185525622.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:28 Heat of formation + Delta-G solvation = -2.538355 kcal Electronic energy + Delta-G solvation = -26782.035771 eV Core-core repulsion = 22953.036558 eV Total energy + Delta-G solvation = -3828.999214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.16112 -40.64970 -39.28411 -37.74945 -36.90099 -35.09986 -34.00691 -33.38195 -32.64139 -31.71525 -28.40697 -27.61087 -26.11370 -25.24142 -24.93475 -23.60112 -22.88934 -21.50808 -20.71562 -19.40611 -18.67700 -18.33831 -17.60479 -17.07608 -16.81069 -16.57873 -16.06684 -16.00143 -15.72627 -15.41630 -15.22577 -15.10554 -14.88488 -14.34832 -14.32195 -14.21875 -13.81179 -13.62400 -13.19764 -13.17748 -12.90524 -12.77654 -12.70653 -12.56232 -12.33574 -12.07101 -11.90127 -11.81214 -11.60253 -11.50946 -11.42301 -11.23638 -11.06889 -10.90588 -10.20656 -10.10963 -9.71007 -9.09550 -8.40827 -5.33830 -0.72508 -0.04821 0.84547 1.44609 1.57028 1.67984 1.77355 1.82331 2.52105 2.70327 2.85565 3.38597 3.41559 3.56637 3.61353 3.71068 3.73724 3.76311 3.82667 3.95969 4.08716 4.21694 4.38303 4.48735 4.53744 4.55192 4.61657 4.66019 4.73406 4.76378 4.79815 4.90743 4.99136 5.01343 5.06110 5.11613 5.18412 5.28107 5.35660 5.50558 5.58012 5.61326 6.19753 6.40694 6.48990 6.89552 7.09529 8.00318 8.11432 9.11377 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.025349 B = 0.002261 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.333559 B =12378.935031 C =13151.204665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 H 0.062 0.938 4 C 0.086 3.914 5 N -0.587 5.587 6 C 0.562 3.438 7 O -0.570 6.570 8 C 0.066 3.934 9 C -0.099 4.099 10 C -0.059 4.059 11 C -0.067 4.067 12 Cl -0.034 7.034 13 C 0.111 3.889 14 N -0.443 5.443 15 C 0.115 3.885 16 C -0.115 4.115 17 C -0.080 4.080 18 H 0.067 0.933 19 C 0.163 3.837 20 N -0.755 5.755 21 C -0.334 4.334 22 H 0.064 0.936 23 C -0.106 4.106 24 N -0.975 5.975 25 Si 1.131 2.869 26 H -0.286 1.286 27 H -0.273 1.273 28 H -0.291 1.291 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.160 0.840 33 H 0.073 0.927 34 H 0.160 0.840 35 H 0.182 0.818 36 H 0.201 0.799 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.030 0.970 42 H 0.006 0.994 43 H 0.361 0.639 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.739 7.019 -31.284 32.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 H 0.081 0.919 4 C -0.035 4.035 5 N -0.316 5.316 6 C 0.350 3.650 7 O -0.449 6.449 8 C -0.070 4.070 9 C -0.120 4.120 10 C -0.085 4.085 11 C -0.096 4.096 12 Cl -0.005 7.005 13 C -0.049 4.049 14 N -0.155 5.155 15 C -0.007 4.007 16 C -0.153 4.153 17 C -0.099 4.099 18 H 0.086 0.914 19 C 0.037 3.963 20 N -0.400 5.400 21 C -0.465 4.465 22 H 0.082 0.918 23 C -0.297 4.297 24 N -0.623 5.623 25 Si 0.955 3.045 26 H -0.213 1.213 27 H -0.198 1.198 28 H -0.218 1.218 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.175 0.825 33 H 0.092 0.908 34 H 0.177 0.823 35 H 0.199 0.801 36 H 0.218 0.782 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.024 0.976 43 H 0.193 0.807 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.701 6.541 -29.046 29.895 hybrid contribution 0.793 0.334 -1.774 1.972 sum -1.908 6.875 -30.820 31.635 Atomic orbital electron populations 1.21759 0.92896 1.02606 1.02479 1.21456 0.97262 0.99023 0.93375 0.91930 1.23186 0.76626 1.02880 1.00843 1.48079 1.08672 1.58087 1.16803 1.18267 0.85830 0.77346 0.83544 1.90765 1.15064 1.56769 1.82329 1.21045 0.90966 0.99930 0.95072 1.22203 1.02432 0.95216 0.92111 1.21882 0.92958 0.96386 0.97322 1.22456 0.94692 1.01205 0.91239 1.98427 1.79677 1.89719 1.32645 1.23472 1.02164 0.92725 0.86570 1.67646 1.09395 1.18062 1.20396 1.21620 0.98918 0.97039 0.83149 1.21759 0.96036 1.00388 0.97131 1.21281 0.94470 0.99801 0.94369 0.91431 1.20831 0.96830 0.93259 0.85398 1.42604 1.66020 1.28866 1.02493 1.20406 1.31019 1.08394 0.86701 0.91847 1.27228 0.99663 0.96486 1.06315 1.70958 1.42114 1.24649 1.24563 0.82587 0.76083 0.74815 0.70994 1.21275 1.19794 1.21775 0.93116 0.90169 0.92132 0.82458 0.90831 0.82271 0.80094 0.78238 0.89939 0.90119 0.92974 0.92301 0.95262 0.97607 0.80677 0.94561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.82 71.98 0.63 -2.40 16 2 C -0.09 -2.30 2.41 -10.72 -0.03 -2.33 16 3 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 4 C 0.09 1.91 5.16 86.36 0.45 2.35 16 5 N -0.59 -15.52 2.97 -822.00 -2.44 -17.96 16 6 C 0.56 15.25 7.65 86.86 0.66 15.91 16 7 O -0.57 -18.72 15.79 -3.81 -0.06 -18.78 16 8 C 0.07 1.32 6.57 41.90 0.28 1.60 16 9 C -0.10 -1.50 9.63 22.60 0.22 -1.28 16 10 C -0.06 -0.58 9.97 22.47 0.22 -0.35 16 11 C -0.07 -0.66 6.35 22.51 0.14 -0.51 16 12 Cl -0.03 -0.28 28.99 -2.72 -0.08 -0.36 16 13 C 0.11 1.21 10.98 84.86 0.93 2.14 16 14 N -0.44 -7.33 6.14 -184.83 -1.13 -8.46 16 15 C 0.12 3.34 6.44 86.37 0.56 3.89 16 16 C -0.11 -3.83 5.25 30.67 0.16 -3.67 16 17 C -0.08 -2.61 1.73 -10.77 -0.02 -2.63 16 18 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 19 C 0.16 6.74 5.41 86.38 0.47 7.21 16 20 N -0.75 -39.33 5.32 -343.45 -1.83 -41.16 16 21 C -0.33 -19.39 9.99 84.04 0.84 -18.55 16 22 H 0.06 3.61 7.83 -2.91 -0.02 3.59 16 23 C -0.11 -6.30 5.50 84.86 0.47 -5.83 16 24 N -0.97 -62.16 13.70 21.65 0.30 -61.87 16 25 Si 1.13 53.13 29.92 68.60 2.05 55.19 16 26 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 28 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 29 H 0.05 1.27 6.29 -2.39 -0.02 1.25 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.16 3.04 4.04 -64.50 -0.26 2.78 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.16 2.36 7.67 -2.91 -0.02 2.33 16 35 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 36 H 0.20 1.03 8.06 -2.91 -0.02 1.00 16 37 H 0.08 2.54 7.00 -2.39 -0.02 2.53 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.06 2.25 7.15 -2.39 -0.02 2.23 16 41 H 0.03 1.21 6.14 -2.39 -0.01 1.19 16 42 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.36 19.34 5.68 -92.71 -0.53 18.82 16 44 H 0.24 15.49 6.77 -92.71 -0.63 14.86 16 Total: -1.00 -73.79 365.84 3.18 -70.61 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.39 Total: 27.23 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 5.98 Total: -4.44 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -5.11 Total: -129.45 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.06 Total: -18.78 kcal Atomic # 14 Polarization: 53.13 SS G_CDS: 2.05 Total: 55.19 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -73.79 3.18 -70.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185525622.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.068 kcal (2) G-P(sol) polarization free energy of solvation -73.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds