Wall clock time and date at job start Tue Mar 31 2020 20:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.51815 * 2 1 4 4 C 1.53192 * 109.49666 * 120.07596 * 2 1 3 5 5 N 1.46927 * 108.77503 * 65.31643 * 4 2 1 6 6 C 1.34767 * 120.63364 * 233.58427 * 5 4 2 7 7 O 1.21524 * 120.00218 * 180.16858 * 6 5 4 8 8 C 1.48118 * 120.00125 * 0.16960 * 6 5 4 9 9 C 1.39347 * 119.70761 * 158.12087 * 8 6 5 10 10 C 1.38524 * 119.07725 * 179.97438 * 9 8 6 11 11 C 1.38771 * 118.47418 * 0.02562 * 10 9 8 12 12 Cl 1.73600 * 120.33428 * 179.97438 * 11 10 9 13 13 C 1.38715 * 119.32742 * 0.24263 * 11 10 9 14 14 N 1.31494 * 120.88046 * 359.48577 * 13 11 10 15 15 C 1.46932 * 118.73339 * 53.86497 * 5 4 2 16 16 C 1.53620 * 108.54019 * 306.09002 * 15 5 4 17 17 C 1.53033 * 109.50166 * 239.91470 * 2 1 3 18 18 H 1.08998 * 109.46136 * 181.39140 * 17 2 1 19 19 C 1.53005 * 109.45841 * 61.42183 * 17 2 1 20 20 N 1.46506 * 109.47145 * 175.00176 * 19 17 2 21 21 C 1.36939 * 119.99867 * 180.02562 * 20 19 17 22 22 H 1.07993 * 120.00025 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99564 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99530 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 120.00118 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47200 * 90.00156 * 25 23 21 27 27 H 1.48506 * 109.46649 * 209.99712 * 25 23 21 28 28 H 1.48494 * 109.47061 * 329.99814 * 25 23 21 29 29 H 1.08997 * 109.47756 * 299.92442 * 1 2 3 30 30 H 1.09003 * 109.47265 * 59.92722 * 1 2 3 31 31 H 1.09005 * 109.47160 * 179.91740 * 1 2 3 32 32 H 1.09011 * 109.58371 * 305.53329 * 4 2 1 33 33 H 1.08992 * 109.58686 * 185.11309 * 4 2 1 34 34 H 1.08004 * 120.45876 * 0.02562 * 9 8 6 35 35 H 1.07992 * 120.76304 * 180.02562 * 10 9 8 36 36 H 1.08001 * 119.56280 * 179.72250 * 13 11 10 37 37 H 1.08995 * 109.58913 * 65.92444 * 15 5 4 38 38 H 1.08997 * 109.58359 * 186.34796 * 15 5 4 39 39 H 1.08999 * 109.63636 * 294.86677 * 16 15 5 40 40 H 1.09002 * 109.45648 * 174.74726 * 16 15 5 41 41 H 1.08997 * 109.47054 * 294.99980 * 19 17 2 42 42 H 1.09002 * 109.47302 * 55.00061 * 19 17 2 43 43 H 0.96999 * 119.99664 * 359.97438 * 20 19 17 44 44 H 0.97008 * 119.99618 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7237 1.2497 5 7 1.6515 -2.1381 1.1698 6 6 0.9748 -2.7219 2.1784 7 8 0.6608 -3.8934 2.1016 8 6 0.6137 -1.9358 3.3807 9 6 -0.4378 -2.3581 4.1917 10 6 -0.7641 -1.6133 5.3132 11 6 -0.0267 -0.4696 5.5854 12 17 -0.3945 0.5001 6.9776 13 6 1.0035 -0.1060 4.7306 14 7 1.2944 -0.8352 3.6758 15 6 2.0190 -2.9055 -0.0281 16 6 1.5032 -2.1558 -1.2658 17 6 2.0409 -0.7231 -1.2482 18 1 3.1306 -0.7444 -1.2351 19 6 1.5605 0.0168 -2.4984 20 7 2.1466 -0.6043 -3.6888 21 6 1.8583 -0.1082 -4.9322 22 1 1.1986 0.7406 -5.0352 23 6 2.4141 -0.6963 -6.0600 24 7 2.1366 -0.2198 -7.2551 25 14 3.5559 -2.1640 -5.8816 26 1 2.7610 -3.4175 -5.9243 27 1 4.5398 -2.1637 -6.9940 28 1 4.2744 -2.0774 -4.5850 29 1 -0.3634 0.5126 0.8906 30 1 -0.3634 0.5150 -0.8893 31 1 -0.3634 -1.0277 -0.0015 32 1 1.6006 -0.2729 2.1390 33 1 3.1274 -0.6460 1.2982 34 1 -0.9902 -3.2541 3.9497 35 1 -1.5736 -1.9157 5.9609 36 1 1.5769 0.7858 4.9363 37 1 3.1034 -3.0022 -0.0817 38 1 1.5637 -3.8947 0.0178 39 1 0.4134 -2.1355 -1.2540 40 1 1.8478 -2.6627 -2.1671 41 1 0.4736 -0.0381 -2.5578 42 1 1.8692 1.0607 -2.4438 43 1 2.7395 -1.3664 -3.5962 44 1 2.5247 -0.6310 -8.0434 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185525627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:39 Heat of formation + Delta-G solvation = 22.717832 kcal Electronic energy + Delta-G solvation = -27054.023141 eV Core-core repulsion = 23226.119118 eV Total energy + Delta-G solvation = -3827.904023 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.41180 -39.84167 -38.19209 -37.23604 -35.20900 -33.51736 -33.04090 -32.20449 -31.50426 -30.61029 -27.42407 -26.82823 -25.15883 -24.38247 -23.33965 -22.84479 -21.37798 -20.64408 -18.87923 -18.01334 -17.61074 -17.30169 -16.88497 -16.14697 -15.81511 -15.28286 -15.03097 -14.69232 -14.39302 -14.27964 -14.12213 -14.01651 -13.76240 -13.49480 -13.06294 -12.86712 -12.73589 -12.54601 -12.36118 -12.19872 -11.89343 -11.70540 -11.47973 -11.35033 -11.04431 -10.81793 -10.62574 -10.54666 -10.44679 -10.33449 -10.17458 -10.01416 -9.61434 -9.57112 -9.35157 -8.86677 -8.66695 -7.19959 -5.75298 -3.10179 -0.04226 0.48913 1.36103 2.29022 2.70869 3.18674 3.37977 3.40388 3.46066 3.61896 4.04070 4.10345 4.25987 4.45038 4.60312 4.80718 4.88288 4.93836 5.05869 5.10830 5.20757 5.24863 5.28971 5.47808 5.51815 5.56043 5.61069 5.69923 5.73632 5.78953 5.88747 5.98600 6.05513 6.15776 6.19336 6.26505 6.33184 6.42965 6.59111 6.72071 6.85286 6.97739 7.24442 7.88096 8.01602 8.44020 9.23486 9.95966 10.16098 11.43317 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.025444 B = 0.002444 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.186406 B =11454.635002 C =12087.976378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 H 0.083 0.917 4 C 0.081 3.919 5 N -0.579 5.579 6 C 0.568 3.432 7 O -0.537 6.537 8 C 0.091 3.909 9 C -0.100 4.100 10 C -0.069 4.069 11 C -0.073 4.073 12 Cl -0.046 7.046 13 C 0.108 3.892 14 N -0.431 5.431 15 C 0.107 3.893 16 C -0.127 4.127 17 C -0.094 4.094 18 H 0.071 0.929 19 C 0.163 3.837 20 N -0.756 5.756 21 C -0.242 4.242 22 H 0.089 0.911 23 C 0.003 3.997 24 N -0.935 5.935 25 Si 0.884 3.116 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.137 0.863 33 H 0.068 0.932 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.174 0.826 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.029 0.971 42 H 0.025 0.975 43 H 0.360 0.640 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.321 -0.531 31.185 31.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.101 0.899 4 C -0.041 4.041 5 N -0.310 5.310 6 C 0.353 3.647 7 O -0.414 6.414 8 C -0.046 4.046 9 C -0.121 4.121 10 C -0.095 4.095 11 C -0.102 4.102 12 Cl -0.018 7.018 13 C -0.051 4.051 14 N -0.143 5.143 15 C -0.014 4.014 16 C -0.165 4.165 17 C -0.113 4.113 18 H 0.089 0.911 19 C 0.036 3.964 20 N -0.401 5.401 21 C -0.372 4.372 22 H 0.107 0.893 23 C -0.193 4.193 24 N -0.584 5.584 25 Si 0.714 3.286 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.153 0.847 33 H 0.086 0.914 34 H 0.175 0.825 35 H 0.171 0.829 36 H 0.191 0.809 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.047 0.953 42 H 0.043 0.957 43 H 0.193 0.807 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.925 -0.704 30.494 30.754 hybrid contribution 0.213 -1.049 0.526 1.193 sum -3.712 -1.753 31.020 31.291 Atomic orbital electron populations 1.21878 0.95115 1.01875 1.01476 1.21504 0.96448 0.99652 0.94332 0.89851 1.22940 1.00635 0.79542 1.01023 1.47963 1.53321 1.12358 1.17323 1.17771 0.78556 0.86139 0.82189 1.90802 1.55065 1.15521 1.79988 1.21382 0.94291 0.92655 0.96321 1.22127 0.96484 1.00468 0.92976 1.21598 0.98801 0.92372 0.96762 1.22349 0.99399 0.95645 0.92796 1.98412 1.93863 1.69794 1.39693 1.23022 0.93885 0.99410 0.88776 1.67839 1.26899 1.04438 1.15174 1.21899 1.00152 0.95997 0.83393 1.22054 1.01733 0.95860 0.96889 1.21390 1.00261 0.94762 0.94923 0.91077 1.20697 0.96249 0.94814 0.84658 1.42745 1.57299 1.37475 1.02624 1.19060 1.23983 1.12206 0.81913 0.89315 1.24677 1.00315 0.99177 0.95133 1.69707 1.48427 1.43191 0.97026 0.86555 0.81276 0.83844 0.76922 1.21054 1.21768 1.20335 0.93677 0.91689 0.92647 0.84664 0.91352 0.82473 0.82857 0.80858 0.91120 0.89003 0.90966 0.90137 0.95313 0.95684 0.80721 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.38 37.16 0.31 -1.43 16 2 C -0.10 -1.18 2.72 -90.50 -0.25 -1.43 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 4 C 0.08 0.87 5.38 -3.71 -0.02 0.85 16 5 N -0.58 -7.09 2.40 -173.51 -0.42 -7.50 16 6 C 0.57 7.26 7.61 -12.21 -0.09 7.17 16 7 O -0.54 -8.24 15.94 5.34 0.09 -8.15 16 8 C 0.09 0.92 6.45 -83.01 -0.54 0.39 16 9 C -0.10 -0.80 9.62 -39.06 -0.38 -1.18 16 10 C -0.07 -0.42 9.97 -39.28 -0.39 -0.81 16 11 C -0.07 -0.46 6.35 -39.21 -0.25 -0.71 16 12 Cl -0.05 -0.26 28.99 -51.86 -1.50 -1.77 16 13 C 0.11 0.73 10.98 -17.52 -0.19 0.54 16 14 N -0.43 -3.86 6.37 -9.77 -0.06 -3.92 16 15 C 0.11 1.38 6.46 -3.48 -0.02 1.36 16 16 C -0.13 -1.84 4.92 -26.39 -0.13 -1.97 16 17 C -0.09 -1.38 1.96 -90.58 -0.18 -1.56 16 18 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 19 C 0.16 3.07 5.19 -4.04 -0.02 3.05 16 20 N -0.76 -17.80 5.12 -59.90 -0.31 -18.10 16 21 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 22 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 23 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 24 N -0.94 -29.59 13.97 55.49 0.78 -28.82 16 25 Si 0.88 22.18 27.74 -169.99 -4.71 17.47 16 26 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.83 6.59 -51.93 -0.34 0.49 16 31 H 0.05 0.71 5.97 -51.93 -0.31 0.40 16 32 H 0.14 1.35 3.98 -79.01 -0.31 1.03 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.16 1.16 7.80 -52.48 -0.41 0.75 16 35 H 0.15 0.56 8.06 -52.49 -0.42 0.13 16 36 H 0.17 0.75 8.06 -52.49 -0.42 0.32 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 1.24 7.00 -51.93 -0.36 0.87 16 39 H 0.07 1.08 6.33 -51.93 -0.33 0.75 16 40 H 0.08 1.28 7.15 -51.93 -0.37 0.91 16 41 H 0.03 0.56 6.74 -51.93 -0.35 0.21 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.36 8.25 4.71 -40.82 -0.19 8.06 16 44 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 360.84 15.07 5.44 5.44 Total: -1.00 -33.25 360.84 -9.06 -42.31 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.95 Total: 5.83 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -2.40 Total: -2.78 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.01 Total: -58.35 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.09 Total: -8.15 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.47 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.50 Total: -1.77 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.25 -9.06 -42.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185525627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.026 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds