Wall clock time and date at job start Tue Mar 31 2020 20:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.51815 * 2 1 4 4 C 1.53192 * 109.49666 * 120.07596 * 2 1 3 5 5 N 1.46927 * 108.77503 * 65.31643 * 4 2 1 6 6 C 1.34767 * 120.63364 * 233.58427 * 5 4 2 7 7 O 1.21524 * 120.00218 * 180.16858 * 6 5 4 8 8 C 1.48118 * 120.00125 * 0.16960 * 6 5 4 9 9 C 1.39347 * 119.70761 * 158.12087 * 8 6 5 10 10 C 1.38524 * 119.07725 * 179.97438 * 9 8 6 11 11 C 1.38771 * 118.47418 * 0.02562 * 10 9 8 12 12 Cl 1.73600 * 120.33428 * 179.97438 * 11 10 9 13 13 C 1.38715 * 119.32742 * 0.24263 * 11 10 9 14 14 N 1.31494 * 120.88046 * 359.48577 * 13 11 10 15 15 C 1.46932 * 118.73339 * 53.86497 * 5 4 2 16 16 C 1.53620 * 108.54019 * 306.09002 * 15 5 4 17 17 C 1.53033 * 109.50166 * 239.91470 * 2 1 3 18 18 H 1.08998 * 109.46136 * 181.39140 * 17 2 1 19 19 C 1.53005 * 109.45841 * 61.42183 * 17 2 1 20 20 N 1.46506 * 109.47145 * 175.00176 * 19 17 2 21 21 C 1.36939 * 119.99867 * 180.02562 * 20 19 17 22 22 H 1.07993 * 120.00025 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99564 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99530 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 120.00118 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47200 * 90.00156 * 25 23 21 27 27 H 1.48506 * 109.46649 * 209.99712 * 25 23 21 28 28 H 1.48494 * 109.47061 * 329.99814 * 25 23 21 29 29 H 1.08997 * 109.47756 * 299.92442 * 1 2 3 30 30 H 1.09003 * 109.47265 * 59.92722 * 1 2 3 31 31 H 1.09005 * 109.47160 * 179.91740 * 1 2 3 32 32 H 1.09011 * 109.58371 * 305.53329 * 4 2 1 33 33 H 1.08992 * 109.58686 * 185.11309 * 4 2 1 34 34 H 1.08004 * 120.45876 * 0.02562 * 9 8 6 35 35 H 1.07992 * 120.76304 * 180.02562 * 10 9 8 36 36 H 1.08001 * 119.56280 * 179.72250 * 13 11 10 37 37 H 1.08995 * 109.58913 * 65.92444 * 15 5 4 38 38 H 1.08997 * 109.58359 * 186.34796 * 15 5 4 39 39 H 1.08999 * 109.63636 * 294.86677 * 16 15 5 40 40 H 1.09002 * 109.45648 * 174.74726 * 16 15 5 41 41 H 1.08997 * 109.47054 * 294.99980 * 19 17 2 42 42 H 1.09002 * 109.47302 * 55.00061 * 19 17 2 43 43 H 0.96999 * 119.99664 * 359.97438 * 20 19 17 44 44 H 0.97008 * 119.99618 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7237 1.2497 5 7 1.6515 -2.1381 1.1698 6 6 0.9748 -2.7219 2.1784 7 8 0.6608 -3.8934 2.1016 8 6 0.6137 -1.9358 3.3807 9 6 -0.4378 -2.3581 4.1917 10 6 -0.7641 -1.6133 5.3132 11 6 -0.0267 -0.4696 5.5854 12 17 -0.3945 0.5001 6.9776 13 6 1.0035 -0.1060 4.7306 14 7 1.2944 -0.8352 3.6758 15 6 2.0190 -2.9055 -0.0281 16 6 1.5032 -2.1558 -1.2658 17 6 2.0409 -0.7231 -1.2482 18 1 3.1306 -0.7444 -1.2351 19 6 1.5605 0.0168 -2.4984 20 7 2.1466 -0.6043 -3.6888 21 6 1.8583 -0.1082 -4.9322 22 1 1.1986 0.7406 -5.0352 23 6 2.4141 -0.6963 -6.0600 24 7 2.1366 -0.2198 -7.2551 25 14 3.5559 -2.1640 -5.8816 26 1 2.7610 -3.4175 -5.9243 27 1 4.5398 -2.1637 -6.9940 28 1 4.2744 -2.0774 -4.5850 29 1 -0.3634 0.5126 0.8906 30 1 -0.3634 0.5150 -0.8893 31 1 -0.3634 -1.0277 -0.0015 32 1 1.6006 -0.2729 2.1390 33 1 3.1274 -0.6460 1.2982 34 1 -0.9902 -3.2541 3.9497 35 1 -1.5736 -1.9157 5.9609 36 1 1.5769 0.7858 4.9363 37 1 3.1034 -3.0022 -0.0817 38 1 1.5637 -3.8947 0.0178 39 1 0.4134 -2.1355 -1.2540 40 1 1.8478 -2.6627 -2.1671 41 1 0.4736 -0.0381 -2.5578 42 1 1.8692 1.0607 -2.4438 43 1 2.7395 -1.3664 -3.5962 44 1 2.5247 -0.6310 -8.0434 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185525627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:38 Heat of formation + Delta-G solvation = 2.639498 kcal Electronic energy + Delta-G solvation = -27054.893803 eV Core-core repulsion = 23226.119118 eV Total energy + Delta-G solvation = -3828.774685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.16585 -40.68773 -39.26817 -37.72599 -36.76704 -34.83880 -33.82600 -33.29773 -32.84056 -31.84544 -28.86279 -27.79063 -26.13629 -24.97986 -24.91059 -23.81168 -22.89596 -21.60597 -20.13731 -19.49167 -18.53149 -18.19501 -17.56249 -17.04360 -16.78900 -16.64437 -16.06786 -15.88090 -15.58588 -15.41558 -15.10466 -15.01902 -14.77943 -14.71048 -14.53505 -13.94702 -13.79164 -13.59408 -13.45426 -13.25432 -13.07570 -12.85643 -12.76418 -12.47026 -12.31538 -12.19518 -12.03934 -11.86292 -11.62035 -11.48037 -11.45424 -11.25120 -11.02230 -10.94388 -10.20970 -10.11452 -9.64720 -9.27470 -8.02889 -5.35668 -0.66306 -0.02587 0.87197 1.36865 1.40666 1.47851 1.48785 1.83242 2.48088 2.51925 2.91599 3.28595 3.46075 3.58035 3.60815 3.72762 3.78753 3.79447 3.87148 4.01673 4.14026 4.28399 4.40871 4.44941 4.55197 4.65259 4.66146 4.70723 4.78115 4.78938 4.88811 4.96358 5.00304 5.06373 5.14697 5.17327 5.20729 5.28250 5.36215 5.55172 5.64658 5.76100 6.21397 6.24925 6.44005 6.95536 7.08469 7.85289 8.04589 9.18846 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.025444 B = 0.002444 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.186406 B =11454.635002 C =12087.976378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 H 0.098 0.902 4 C 0.085 3.915 5 N -0.581 5.581 6 C 0.564 3.436 7 O -0.572 6.572 8 C 0.069 3.931 9 C -0.102 4.102 10 C -0.060 4.060 11 C -0.069 4.069 12 Cl -0.036 7.036 13 C 0.110 3.890 14 N -0.442 5.442 15 C 0.113 3.887 16 C -0.122 4.122 17 C -0.084 4.084 18 H 0.076 0.924 19 C 0.161 3.839 20 N -0.757 5.757 21 C -0.233 4.233 22 H 0.054 0.946 23 C -0.066 4.066 24 N -0.985 5.985 25 Si 0.954 3.046 26 H -0.279 1.279 27 H -0.296 1.296 28 H -0.249 1.249 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.151 0.849 33 H 0.078 0.922 34 H 0.158 0.842 35 H 0.180 0.820 36 H 0.199 0.801 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.022 0.978 42 H 0.024 0.976 43 H 0.366 0.634 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.578 -0.492 34.565 34.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 H 0.116 0.884 4 C -0.036 4.036 5 N -0.310 5.310 6 C 0.351 3.649 7 O -0.452 6.452 8 C -0.067 4.067 9 C -0.123 4.123 10 C -0.086 4.086 11 C -0.098 4.098 12 Cl -0.007 7.007 13 C -0.050 4.050 14 N -0.154 5.154 15 C -0.009 4.009 16 C -0.160 4.160 17 C -0.103 4.103 18 H 0.094 0.906 19 C 0.036 3.964 20 N -0.403 5.403 21 C -0.364 4.364 22 H 0.072 0.928 23 C -0.258 4.258 24 N -0.636 5.636 25 Si 0.781 3.219 26 H -0.205 1.205 27 H -0.223 1.223 28 H -0.173 1.173 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.167 0.833 33 H 0.096 0.904 34 H 0.176 0.824 35 H 0.197 0.803 36 H 0.216 0.784 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.040 0.960 42 H 0.042 0.958 43 H 0.199 0.801 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.184 -0.647 33.933 34.088 hybrid contribution -0.138 -0.927 -0.414 1.025 sum -3.322 -1.574 33.519 33.720 Atomic orbital electron populations 1.21814 0.95244 1.01098 1.01674 1.21494 0.96244 1.00210 0.93368 0.88426 1.23048 1.01285 0.78533 1.00741 1.48033 1.53196 1.12863 1.16948 1.18192 0.77780 0.85982 0.82901 1.90771 1.56392 1.17098 1.80889 1.21064 0.95859 0.93646 0.96117 1.22188 0.96061 1.00762 0.93316 1.21856 0.99003 0.91705 0.96080 1.22436 0.98971 0.95556 0.92812 1.98426 1.93740 1.69461 1.39052 1.23421 0.93972 0.99577 0.88010 1.67668 1.27042 1.04366 1.16352 1.21766 1.00674 0.95430 0.83072 1.21957 1.01110 0.95839 0.97136 1.21296 1.00447 0.94544 0.94008 0.90573 1.20852 0.95655 0.95044 0.84899 1.42750 1.57527 1.37709 1.02291 1.19039 1.22455 1.10800 0.84080 0.92774 1.25529 1.02761 1.02801 0.94662 1.69893 1.50381 1.45301 0.98002 0.85417 0.78950 0.79626 0.77889 1.20480 1.22253 1.17316 0.91841 0.93079 0.93903 0.83279 0.90355 0.82428 0.80307 0.78387 0.89879 0.89918 0.91958 0.91668 0.96005 0.95814 0.80071 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.38 71.98 0.60 -2.59 16 2 C -0.09 -2.03 2.72 -10.72 -0.03 -2.06 16 3 H 0.10 1.90 8.14 -2.39 -0.02 1.89 16 4 C 0.09 1.64 5.38 86.36 0.46 2.11 16 5 N -0.58 -13.47 2.40 -821.17 -1.97 -15.45 16 6 C 0.56 14.02 7.61 86.87 0.66 14.68 16 7 O -0.57 -17.62 15.94 -3.79 -0.06 -17.69 16 8 C 0.07 1.30 6.45 41.90 0.27 1.57 16 9 C -0.10 -1.48 9.62 22.61 0.22 -1.26 16 10 C -0.06 -0.57 9.97 22.47 0.22 -0.34 16 11 C -0.07 -0.65 6.35 22.51 0.14 -0.51 16 12 Cl -0.04 -0.30 28.99 -2.72 -0.08 -0.38 16 13 C 0.11 1.14 10.98 84.86 0.93 2.07 16 14 N -0.44 -6.82 6.37 -184.82 -1.18 -8.00 16 15 C 0.11 2.80 6.46 86.51 0.56 3.36 16 16 C -0.12 -3.45 4.92 30.81 0.15 -3.30 16 17 C -0.08 -2.34 1.96 -10.77 -0.02 -2.36 16 18 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 19 C 0.16 6.02 5.19 86.38 0.45 6.47 16 20 N -0.76 -35.39 5.12 -343.44 -1.76 -37.15 16 21 C -0.23 -13.47 10.47 84.03 0.88 -12.59 16 22 H 0.05 3.44 8.06 -2.91 -0.02 3.42 16 23 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 24 N -0.98 -64.00 13.97 21.65 0.30 -63.70 16 25 Si 0.95 45.84 27.74 68.60 1.90 47.74 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 27 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 28 H -0.25 -10.66 6.52 99.48 0.65 -10.01 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.29 6.59 -2.39 -0.02 1.27 16 31 H 0.04 1.08 5.97 -2.38 -0.01 1.06 16 32 H 0.15 2.56 3.98 -55.86 -0.22 2.34 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.16 2.20 7.80 -2.91 -0.02 2.18 16 35 H 0.18 0.70 8.06 -2.91 -0.02 0.67 16 36 H 0.20 0.96 8.06 -2.91 -0.02 0.93 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.08 2.23 7.00 -2.39 -0.02 2.21 16 39 H 0.06 1.87 6.33 -2.39 -0.02 1.85 16 40 H 0.06 2.03 7.15 -2.39 -0.02 2.02 16 41 H 0.02 0.86 6.74 -2.39 -0.02 0.84 16 42 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.37 16.22 4.71 -92.71 -0.44 15.79 16 44 H 0.26 15.91 8.31 -92.70 -0.77 15.14 16 Total: -1.00 -73.43 360.84 3.46 -69.98 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.33 Total: 22.90 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 5.97 Total: 1.74 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -4.61 Total: -124.30 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.06 Total: -17.69 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.90 Total: 47.74 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -73.43 3.46 -69.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185525627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.618 kcal (2) G-P(sol) polarization free energy of solvation -73.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds