Wall clock time and date at job start Tue Mar 31 2020 20:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.52058 * 2 1 4 4 C 1.53196 * 109.49516 * 239.92574 * 2 1 3 5 5 N 1.46927 * 108.77457 * 185.41543 * 4 2 1 6 6 C 1.34781 * 120.62554 * 233.62701 * 5 4 2 7 7 O 1.21528 * 119.99941 * 356.07719 * 6 5 4 8 8 C 1.48082 * 119.99811 * 176.07537 * 6 5 4 9 9 N 1.32774 * 119.73659 * 41.01658 * 8 6 5 10 10 C 1.31463 * 121.65457 * 180.02562 * 9 8 6 11 11 C 1.38644 * 120.94241 * 359.96834 * 10 9 8 12 12 C 1.38511 * 119.37194 * 0.03129 * 11 10 9 13 13 C 1.38802 * 118.48172 * 359.72607 * 12 11 10 14 14 Cl 1.73595 * 120.49344 * 180.26450 * 13 12 11 15 15 C 1.46919 * 118.74084 * 53.60311 * 5 4 2 16 16 C 1.53194 * 108.77606 * 306.39122 * 15 5 4 17 17 C 1.53036 * 109.31086 * 54.63847 * 16 15 5 18 18 H 1.08996 * 109.46499 * 58.63733 * 17 16 15 19 19 C 1.53002 * 109.46161 * 178.61561 * 17 16 15 20 20 N 1.46509 * 109.46715 * 294.99729 * 19 17 16 21 21 C 1.36936 * 119.99807 * 179.97438 * 20 19 17 22 22 H 1.08005 * 119.99841 * 359.97438 * 21 20 19 23 23 C 1.38805 * 120.00063 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99962 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00426 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47152 * 89.99997 * 25 23 21 27 27 H 1.48495 * 109.47393 * 210.00256 * 25 23 21 28 28 H 1.48507 * 109.46707 * 330.00322 * 25 23 21 29 29 H 1.09009 * 109.47337 * 299.91504 * 1 2 3 30 30 H 1.08995 * 109.47930 * 59.91683 * 1 2 3 31 31 H 1.08997 * 109.47592 * 179.91794 * 1 2 3 32 32 H 1.08992 * 109.59062 * 65.61744 * 4 2 1 33 33 H 1.09000 * 109.69937 * 305.26851 * 4 2 1 34 34 H 1.08001 * 119.52738 * 179.97438 * 10 9 8 35 35 H 1.07995 * 120.31253 * 180.02562 * 11 10 9 36 36 H 1.08001 * 120.75770 * 180.02562 * 12 11 10 37 37 H 1.09007 * 109.58421 * 186.60896 * 15 5 4 38 38 H 1.08999 * 109.58640 * 66.18126 * 15 5 4 39 39 H 1.08997 * 109.49659 * 294.68527 * 16 15 5 40 40 H 1.09001 * 109.52509 * 174.60036 * 16 15 5 41 41 H 1.08996 * 109.47095 * 175.00124 * 19 17 16 42 42 H 1.09000 * 109.47418 * 54.99443 * 19 17 16 43 43 H 0.96993 * 119.99578 * 0.02562 * 20 19 17 44 44 H 0.97004 * 120.00229 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0412 -0.7237 -1.2497 5 7 3.5045 -0.8291 -1.1697 6 6 4.2810 -0.3855 -2.1781 7 8 3.7709 0.0417 -3.1951 8 6 5.7556 -0.4185 -2.0468 9 7 6.3437 -1.4706 -1.4899 10 6 7.6495 -1.5393 -1.3539 11 6 8.4670 -0.5082 -1.7908 12 6 7.8963 0.6089 -2.3779 13 6 6.5157 0.6530 -2.5136 14 17 5.7460 2.0249 -3.2480 15 6 4.1052 -1.4267 0.0305 16 6 3.5708 -0.6950 1.2658 17 6 2.0408 -0.7231 1.2482 18 1 1.6967 -1.7573 1.2349 19 6 1.5037 -0.0233 2.4983 20 7 1.8918 -0.7842 3.6887 21 6 1.5210 -0.3464 4.9321 22 1 0.9429 0.5600 5.0352 23 6 1.8882 -1.0675 6.0598 24 7 2.5933 -2.1719 5.9341 25 14 1.3819 -0.4708 7.7560 26 1 0.0655 -1.0571 8.1144 27 1 2.3990 -0.8915 8.7528 28 1 1.2786 1.0106 7.7490 29 1 -0.3634 0.5125 0.8908 30 1 -0.3635 0.5151 -0.8891 31 1 -0.3634 -1.0276 -0.0015 32 1 1.7636 -0.1579 -2.1389 33 1 1.6052 -1.7214 -1.3007 34 1 8.0917 -2.4114 -0.8953 35 1 9.5385 -0.5755 -1.6743 36 1 8.5119 1.4249 -2.7266 37 1 5.1895 -1.3245 -0.0141 38 1 3.8374 -2.4818 0.0864 39 1 3.9159 0.3388 1.2539 40 1 3.9334 -1.1893 2.1671 41 1 0.4168 0.0354 2.4431 42 1 1.9194 0.9825 2.5586 43 1 2.4120 -1.5976 3.5960 44 1 2.8560 -2.4820 5.0533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185526181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:47 Heat of formation + Delta-G solvation = 13.564815 kcal Electronic energy + Delta-G solvation = -27167.031924 eV Core-core repulsion = 23338.730996 eV Total energy + Delta-G solvation = -3828.300928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.20064 -39.68905 -38.00686 -36.92854 -35.16933 -33.91258 -32.90901 -32.06822 -31.58908 -30.16228 -27.07327 -26.73305 -24.82722 -23.96697 -23.39804 -22.52855 -21.55479 -20.46889 -19.48348 -17.78844 -17.46663 -17.22940 -16.78132 -16.28344 -15.49692 -15.31025 -14.96747 -14.55756 -14.36363 -14.18151 -13.91010 -13.83209 -13.58180 -13.22326 -13.11033 -12.91620 -12.76126 -12.47693 -12.28378 -11.94252 -11.82612 -11.61038 -11.46689 -10.91579 -10.74621 -10.66145 -10.52864 -10.43174 -10.38050 -10.21693 -10.12148 -9.95869 -9.56073 -9.40102 -9.15377 -8.84554 -8.61252 -6.96183 -6.08736 -3.07462 0.18871 0.56057 1.66002 2.40360 2.72773 3.20465 3.52362 3.57211 3.71065 3.79093 4.18850 4.23069 4.37857 4.66428 4.71159 4.77085 4.87387 4.92419 4.98560 5.14886 5.28044 5.35306 5.43495 5.48306 5.58373 5.63142 5.67229 5.78625 5.85101 5.86439 5.88440 5.97913 6.02814 6.19422 6.24170 6.29838 6.42433 6.44932 6.56208 6.78637 6.88237 7.17004 7.27840 7.83564 7.95011 8.77899 9.26014 10.12227 10.27822 11.40084 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014170 B = 0.002973 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.587420 B = 9414.599462 C =10440.369435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.073 0.927 4 C 0.118 3.882 5 N -0.587 5.587 6 C 0.570 3.430 7 O -0.521 6.521 8 C 0.099 3.901 9 N -0.438 5.438 10 C 0.100 3.900 11 C -0.141 4.141 12 C -0.072 4.072 13 C -0.046 4.046 14 Cl -0.027 7.027 15 C 0.100 3.900 16 C -0.127 4.127 17 C -0.090 4.090 18 H 0.071 0.929 19 C 0.162 3.838 20 N -0.743 5.743 21 C -0.329 4.329 22 H 0.063 0.937 23 C -0.046 4.046 24 N -0.946 5.946 25 Si 1.082 2.918 26 H -0.296 1.296 27 H -0.288 1.288 28 H -0.295 1.295 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.173 0.827 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.025 0.975 42 H 0.016 0.984 43 H 0.366 0.634 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.942 3.728 -19.713 22.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.004 4.004 5 N -0.318 5.318 6 C 0.355 3.645 7 O -0.397 6.397 8 C -0.040 4.040 9 N -0.149 5.149 10 C -0.059 4.059 11 C -0.161 4.161 12 C -0.099 4.099 13 C -0.076 4.076 14 Cl 0.002 6.998 15 C -0.022 4.022 16 C -0.165 4.165 17 C -0.109 4.109 18 H 0.090 0.910 19 C 0.035 3.965 20 N -0.389 5.389 21 C -0.460 4.460 22 H 0.081 0.919 23 C -0.244 4.244 24 N -0.592 5.592 25 Si 0.913 3.087 26 H -0.224 1.224 27 H -0.214 1.214 28 H -0.222 1.222 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.190 0.810 35 H 0.168 0.832 36 H 0.170 0.830 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.043 0.957 42 H 0.034 0.966 43 H 0.199 0.801 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.976 3.290 -18.380 21.170 hybrid contribution 0.668 0.883 -1.860 2.164 sum 10.644 4.172 -20.240 23.246 Atomic orbital electron populations 1.21825 0.94207 1.02243 1.02133 1.21454 0.96224 0.99910 0.94045 0.90857 1.21778 0.78095 1.01220 0.99294 1.47966 1.06926 1.58724 1.18164 1.17725 0.84697 0.78310 0.83784 1.90819 1.73644 1.46676 1.28543 1.21117 0.95227 0.90573 0.97105 1.67944 1.12819 1.22915 1.11253 1.23076 0.88410 0.98667 0.95798 1.22395 1.02359 0.93577 0.97741 1.21592 0.92238 0.99207 0.96846 1.21951 0.93809 0.91754 1.00052 1.98428 1.80985 1.40107 1.80238 1.22239 0.99730 0.97180 0.83095 1.21968 0.96010 1.01040 0.97480 1.21368 0.94781 1.00144 0.94642 0.91022 1.20691 0.96699 0.93915 0.85196 1.42390 1.66052 1.28650 1.01784 1.20066 1.31933 1.08751 0.85254 0.91870 1.25739 0.99628 0.96657 1.02332 1.70854 1.40144 1.23110 1.25060 0.83203 0.75873 0.74353 0.75268 1.22354 1.21412 1.22218 0.91304 0.92857 0.92461 0.89008 0.91101 0.81031 0.83152 0.83016 0.87991 0.90877 0.92041 0.89768 0.95695 0.96574 0.80065 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.82 37.15 0.33 -1.49 16 2 C -0.10 -1.32 2.41 -90.50 -0.22 -1.53 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.12 1.54 5.71 -3.71 -0.02 1.52 16 5 N -0.59 -8.13 2.97 -173.79 -0.52 -8.64 16 6 C 0.57 8.37 7.12 -12.22 -0.09 8.28 16 7 O -0.52 -8.66 14.76 5.34 0.08 -8.58 16 8 C 0.10 1.25 5.98 -82.98 -0.50 0.76 16 9 N -0.44 -4.91 7.34 -9.78 -0.07 -4.98 16 10 C 0.10 0.77 11.18 -17.56 -0.20 0.57 16 11 C -0.14 -0.86 10.11 -39.33 -0.40 -1.26 16 12 C -0.07 -0.55 9.98 -39.27 -0.39 -0.95 16 13 C -0.05 -0.51 6.35 -38.93 -0.25 -0.75 16 14 Cl -0.03 -0.32 26.87 -51.86 -1.39 -1.71 16 15 C 0.10 1.34 6.03 -3.71 -0.02 1.31 16 16 C -0.13 -1.96 5.25 -26.61 -0.14 -2.10 16 17 C -0.09 -1.44 1.73 -90.58 -0.16 -1.60 16 18 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 19 C 0.16 3.28 5.41 -4.04 -0.02 3.26 16 20 N -0.74 -18.64 5.32 -59.90 -0.32 -18.96 16 21 C -0.33 -9.36 9.99 -15.06 -0.15 -9.51 16 22 H 0.06 1.79 7.83 -52.48 -0.41 1.37 16 23 C -0.05 -1.35 5.50 -17.43 -0.10 -1.44 16 24 N -0.95 -29.14 13.70 55.49 0.76 -28.38 16 25 Si 1.08 26.09 29.92 -169.99 -5.09 21.01 16 26 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.30 -6.75 7.11 56.52 0.40 -6.34 16 29 H 0.07 0.93 6.29 -51.92 -0.33 0.60 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.22 7.03 -51.93 -0.36 0.86 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.15 0.40 8.06 -52.49 -0.42 -0.02 16 36 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.10 1.32 4.60 -51.93 -0.24 1.08 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.45 7.15 -51.93 -0.37 1.08 16 41 H 0.03 0.51 6.14 -51.93 -0.32 0.20 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.37 9.28 5.68 -40.82 -0.23 9.05 16 44 H 0.25 7.68 6.78 -40.82 -0.28 7.40 16 LS Contribution 364.56 15.07 5.49 5.49 Total: -1.00 -34.18 364.56 -9.35 -43.53 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.99 Total: 6.15 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -2.32 Total: -4.93 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: -0.15 Total: -60.96 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.08 Total: -8.58 kcal Atomic # 14 Polarization: 26.09 SS G_CDS: -5.09 Total: 21.01 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.39 Total: -1.71 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.18 -9.35 -43.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185526181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.099 kcal (2) G-P(sol) polarization free energy of solvation -34.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds