Wall clock time and date at job start Tue Mar 31 2020 20:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.52058 * 2 1 4 4 C 1.53196 * 109.49516 * 239.92574 * 2 1 3 5 5 N 1.46927 * 108.77457 * 185.41543 * 4 2 1 6 6 C 1.34781 * 120.62554 * 233.62701 * 5 4 2 7 7 O 1.21528 * 119.99941 * 356.07719 * 6 5 4 8 8 C 1.48082 * 119.99811 * 176.07537 * 6 5 4 9 9 N 1.32774 * 119.73659 * 41.01658 * 8 6 5 10 10 C 1.31463 * 121.65457 * 180.02562 * 9 8 6 11 11 C 1.38644 * 120.94241 * 359.96834 * 10 9 8 12 12 C 1.38511 * 119.37194 * 0.03129 * 11 10 9 13 13 C 1.38802 * 118.48172 * 359.72607 * 12 11 10 14 14 Cl 1.73595 * 120.49344 * 180.26450 * 13 12 11 15 15 C 1.46919 * 118.74084 * 53.60311 * 5 4 2 16 16 C 1.53194 * 108.77606 * 306.39122 * 15 5 4 17 17 C 1.53036 * 109.31086 * 54.63847 * 16 15 5 18 18 H 1.08996 * 109.46499 * 58.63733 * 17 16 15 19 19 C 1.53002 * 109.46161 * 178.61561 * 17 16 15 20 20 N 1.46509 * 109.46715 * 294.99729 * 19 17 16 21 21 C 1.36936 * 119.99807 * 179.97438 * 20 19 17 22 22 H 1.08005 * 119.99841 * 359.97438 * 21 20 19 23 23 C 1.38805 * 120.00063 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99962 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00426 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47152 * 89.99997 * 25 23 21 27 27 H 1.48495 * 109.47393 * 210.00256 * 25 23 21 28 28 H 1.48507 * 109.46707 * 330.00322 * 25 23 21 29 29 H 1.09009 * 109.47337 * 299.91504 * 1 2 3 30 30 H 1.08995 * 109.47930 * 59.91683 * 1 2 3 31 31 H 1.08997 * 109.47592 * 179.91794 * 1 2 3 32 32 H 1.08992 * 109.59062 * 65.61744 * 4 2 1 33 33 H 1.09000 * 109.69937 * 305.26851 * 4 2 1 34 34 H 1.08001 * 119.52738 * 179.97438 * 10 9 8 35 35 H 1.07995 * 120.31253 * 180.02562 * 11 10 9 36 36 H 1.08001 * 120.75770 * 180.02562 * 12 11 10 37 37 H 1.09007 * 109.58421 * 186.60896 * 15 5 4 38 38 H 1.08999 * 109.58640 * 66.18126 * 15 5 4 39 39 H 1.08997 * 109.49659 * 294.68527 * 16 15 5 40 40 H 1.09001 * 109.52509 * 174.60036 * 16 15 5 41 41 H 1.08996 * 109.47095 * 175.00124 * 19 17 16 42 42 H 1.09000 * 109.47418 * 54.99443 * 19 17 16 43 43 H 0.96993 * 119.99578 * 0.02562 * 20 19 17 44 44 H 0.97004 * 120.00229 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0412 -0.7237 -1.2497 5 7 3.5045 -0.8291 -1.1697 6 6 4.2810 -0.3855 -2.1781 7 8 3.7709 0.0417 -3.1951 8 6 5.7556 -0.4185 -2.0468 9 7 6.3437 -1.4706 -1.4899 10 6 7.6495 -1.5393 -1.3539 11 6 8.4670 -0.5082 -1.7908 12 6 7.8963 0.6089 -2.3779 13 6 6.5157 0.6530 -2.5136 14 17 5.7460 2.0249 -3.2480 15 6 4.1052 -1.4267 0.0305 16 6 3.5708 -0.6950 1.2658 17 6 2.0408 -0.7231 1.2482 18 1 1.6967 -1.7573 1.2349 19 6 1.5037 -0.0233 2.4983 20 7 1.8918 -0.7842 3.6887 21 6 1.5210 -0.3464 4.9321 22 1 0.9429 0.5600 5.0352 23 6 1.8882 -1.0675 6.0598 24 7 2.5933 -2.1719 5.9341 25 14 1.3819 -0.4708 7.7560 26 1 0.0655 -1.0571 8.1144 27 1 2.3990 -0.8915 8.7528 28 1 1.2786 1.0106 7.7490 29 1 -0.3634 0.5125 0.8908 30 1 -0.3635 0.5151 -0.8891 31 1 -0.3634 -1.0276 -0.0015 32 1 1.7636 -0.1579 -2.1389 33 1 1.6052 -1.7214 -1.3007 34 1 8.0917 -2.4114 -0.8953 35 1 9.5385 -0.5755 -1.6743 36 1 8.5119 1.4249 -2.7266 37 1 5.1895 -1.3245 -0.0141 38 1 3.8374 -2.4818 0.0864 39 1 3.9159 0.3388 1.2539 40 1 3.9334 -1.1893 2.1671 41 1 0.4168 0.0354 2.4431 42 1 1.9194 0.9825 2.5586 43 1 2.4120 -1.5976 3.5960 44 1 2.8560 -2.4820 5.0533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185526181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:46 Heat of formation + Delta-G solvation = -7.436381 kcal Electronic energy + Delta-G solvation = -27167.942604 eV Core-core repulsion = 23338.730996 eV Total energy + Delta-G solvation = -3829.211608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.07718 -40.66318 -39.22434 -37.75282 -36.84441 -35.27534 -33.79473 -33.39072 -32.34947 -31.91407 -28.29640 -28.05756 -25.92204 -25.19514 -24.62328 -23.81225 -22.92501 -21.57253 -20.66737 -19.36308 -18.71681 -18.21962 -17.50065 -17.31178 -16.90410 -16.35306 -16.10372 -16.01673 -15.61495 -15.46892 -15.18807 -15.09964 -14.68078 -14.42551 -14.28496 -14.18569 -13.88788 -13.48990 -13.22878 -13.17908 -12.97547 -12.78513 -12.66747 -12.57615 -12.34854 -12.10660 -11.89181 -11.79676 -11.62378 -11.48302 -11.43425 -11.14442 -10.94784 -10.90108 -10.45083 -10.16134 -9.74888 -9.08056 -8.39147 -5.32252 -0.54039 -0.06921 0.88155 1.42782 1.58601 1.69067 1.73956 1.83484 2.48744 2.71148 2.90905 3.40035 3.47331 3.55937 3.61452 3.67647 3.75087 3.83203 3.90763 4.04736 4.12553 4.22083 4.26128 4.39923 4.41831 4.53912 4.59558 4.66135 4.72133 4.75997 4.83471 4.90049 4.90988 5.00105 5.01497 5.11168 5.15793 5.26965 5.36176 5.40689 5.50711 5.59353 6.16235 6.49957 6.51374 6.88914 7.11105 8.01611 8.12903 9.13127 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.014170 B = 0.002973 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.587420 B = 9414.599462 C =10440.369435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.064 0.936 4 C 0.120 3.880 5 N -0.589 5.589 6 C 0.565 3.435 7 O -0.550 6.550 8 C 0.067 3.933 9 N -0.460 5.460 10 C 0.095 3.905 11 C -0.117 4.117 12 C -0.072 4.072 13 C -0.061 4.061 14 Cl -0.045 7.045 15 C 0.111 3.889 16 C -0.118 4.118 17 C -0.079 4.079 18 H 0.070 0.930 19 C 0.164 3.836 20 N -0.753 5.753 21 C -0.336 4.336 22 H 0.062 0.938 23 C -0.101 4.101 24 N -0.973 5.973 25 Si 1.129 2.871 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.276 1.276 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.204 0.796 35 H 0.196 0.804 36 H 0.180 0.820 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.027 0.973 42 H 0.007 0.993 43 H 0.362 0.638 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.427 3.755 -20.037 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 H 0.083 0.917 4 C -0.001 4.001 5 N -0.320 5.320 6 C 0.351 3.649 7 O -0.427 6.427 8 C -0.070 4.070 9 N -0.173 5.173 10 C -0.065 4.065 11 C -0.136 4.136 12 C -0.098 4.098 13 C -0.091 4.091 14 Cl -0.016 7.016 15 C -0.011 4.011 16 C -0.157 4.157 17 C -0.098 4.098 18 H 0.088 0.912 19 C 0.037 3.963 20 N -0.398 5.398 21 C -0.468 4.468 22 H 0.080 0.920 23 C -0.293 4.293 24 N -0.621 5.621 25 Si 0.954 3.046 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.201 1.201 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.221 0.779 35 H 0.213 0.787 36 H 0.197 0.803 37 H 0.129 0.871 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.045 0.955 42 H 0.025 0.975 43 H 0.195 0.805 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.443 3.338 -18.741 22.210 hybrid contribution 0.316 0.869 -1.798 2.022 sum 11.758 4.206 -20.539 24.037 Atomic orbital electron populations 1.21792 0.93012 1.02754 1.02478 1.21349 0.97144 0.99078 0.93045 0.91705 1.21775 0.78031 1.01737 0.98605 1.48036 1.07193 1.58665 1.18118 1.18141 0.85920 0.77476 0.83316 1.90783 1.74568 1.47884 1.29485 1.20853 0.94177 0.92168 0.99837 1.67854 1.14792 1.22650 1.11974 1.23750 0.87420 1.00192 0.95093 1.22899 1.04317 0.91698 0.94734 1.22014 0.90869 1.00604 0.96270 1.22170 0.95162 0.91060 1.00700 1.98414 1.81613 1.40919 1.80649 1.22135 1.00191 0.96922 0.81845 1.21843 0.95590 1.00484 0.97775 1.21245 0.95068 0.99738 0.93751 0.91165 1.20803 0.96754 0.93305 0.85411 1.42559 1.65998 1.28909 1.02345 1.20397 1.31151 1.08473 0.86738 0.92038 1.27152 0.99558 0.96448 1.06099 1.70959 1.42009 1.24513 1.24616 0.82602 0.75768 0.75080 0.71164 1.21127 1.21727 1.20145 0.92550 0.90878 0.91875 0.89087 0.89894 0.77936 0.78708 0.80290 0.87142 0.90292 0.93006 0.91798 0.95494 0.97529 0.80522 0.94456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.82 71.98 0.63 -2.79 16 2 C -0.09 -2.33 2.41 -10.72 -0.03 -2.36 16 3 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 4 C 0.12 3.09 5.71 86.36 0.49 3.58 16 5 N -0.59 -16.32 2.97 -822.04 -2.44 -18.77 16 6 C 0.56 16.76 7.12 86.86 0.62 17.38 16 7 O -0.55 -18.65 14.76 -3.80 -0.06 -18.70 16 8 C 0.07 1.68 5.98 41.90 0.25 1.93 16 9 N -0.46 -9.75 7.34 -184.84 -1.36 -11.10 16 10 C 0.09 1.18 11.18 84.84 0.95 2.13 16 11 C -0.12 -0.96 10.11 22.43 0.23 -0.73 16 12 C -0.07 -0.90 9.98 22.47 0.22 -0.68 16 13 C -0.06 -1.30 6.35 22.69 0.14 -1.15 16 14 Cl -0.04 -1.06 26.87 -2.72 -0.07 -1.14 16 15 C 0.11 2.97 6.03 86.36 0.52 3.49 16 16 C -0.12 -3.73 5.25 30.67 0.16 -3.57 16 17 C -0.08 -2.55 1.73 -10.77 -0.02 -2.57 16 18 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 19 C 0.16 6.70 5.41 86.38 0.47 7.17 16 20 N -0.75 -38.45 5.32 -343.43 -1.83 -40.27 16 21 C -0.34 -19.25 9.99 84.03 0.84 -18.41 16 22 H 0.06 3.48 7.83 -2.91 -0.02 3.45 16 23 C -0.10 -5.90 5.50 84.86 0.47 -5.43 16 24 N -0.97 -60.60 13.70 21.65 0.30 -60.30 16 25 Si 1.13 52.25 29.92 68.60 2.05 54.30 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 27 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 28 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 29 H 0.06 1.49 6.29 -2.38 -0.01 1.48 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 2.40 7.03 -2.39 -0.02 2.38 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.20 1.12 8.06 -2.91 -0.02 1.09 16 35 H 0.20 -0.12 8.06 -2.91 -0.02 -0.14 16 36 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 37 H 0.11 2.83 4.60 -2.38 -0.01 2.82 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.06 2.27 7.15 -2.39 -0.02 2.26 16 41 H 0.03 1.11 6.14 -2.39 -0.01 1.10 16 42 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.36 18.87 5.68 -92.71 -0.53 18.34 16 44 H 0.25 15.14 6.78 -92.71 -0.63 14.51 16 Total: -1.00 -75.56 364.56 3.19 -72.37 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.64 Total: 25.62 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 5.95 Total: -2.01 kcal Atomic # 7 Polarization: -125.11 SS G_CDS: -5.33 Total: -130.44 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.06 Total: -18.70 kcal Atomic # 14 Polarization: 52.25 SS G_CDS: 2.05 Total: 54.30 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.07 Total: -1.14 kcal Total: -75.56 3.19 -72.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185526181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.937 kcal (2) G-P(sol) polarization free energy of solvation -75.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds