Wall clock time and date at job start Tue Mar 31 2020 20:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.49593 * 2 1 4 4 C 1.53190 * 109.49995 * 239.90334 * 2 1 3 5 5 N 1.46921 * 108.77877 * 294.68718 * 4 2 1 6 6 C 1.34776 * 120.63552 * 126.36856 * 5 4 2 7 7 O 1.21522 * 119.99792 * 352.16505 * 6 5 4 8 8 C 1.48081 * 120.00200 * 172.16903 * 6 5 4 9 9 N 1.32781 * 119.73671 * 352.12125 * 8 6 5 10 10 C 1.31468 * 121.65305 * 179.75066 * 9 8 6 11 11 C 1.38636 * 120.94231 * 0.53047 * 10 9 8 12 12 C 1.38516 * 119.37418 * 359.73692 * 11 10 9 13 13 C 1.38793 * 118.47805 * 0.02562 * 12 11 10 14 14 Cl 1.73602 * 120.48897 * 179.97438 * 13 12 11 15 15 C 1.46925 * 118.73493 * 306.38962 * 5 4 2 16 16 C 1.53190 * 108.77630 * 53.60887 * 15 5 4 17 17 C 1.53038 * 109.49681 * 120.06371 * 2 1 3 18 18 H 1.08997 * 109.46057 * 178.59117 * 17 2 1 19 19 C 1.52992 * 109.46279 * 298.57014 * 17 2 1 20 20 N 1.46504 * 109.47032 * 185.00126 * 19 17 2 21 21 C 1.36940 * 119.99714 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99975 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99809 * 180.02562 * 21 20 19 24 24 N 1.31621 * 119.99958 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00132 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47509 * 179.97438 * 25 23 21 27 27 H 1.48508 * 109.46911 * 299.99673 * 25 23 21 28 28 H 1.48499 * 109.47198 * 59.99346 * 25 23 21 29 29 H 1.08995 * 109.47424 * 299.93296 * 1 2 3 30 30 H 1.09004 * 109.47550 * 59.93439 * 1 2 3 31 31 H 1.09003 * 109.47350 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.58638 * 54.46941 * 4 2 1 33 33 H 1.08996 * 109.58921 * 174.89574 * 4 2 1 34 34 H 1.07998 * 119.52490 * 180.26744 * 10 9 8 35 35 H 1.08006 * 120.31645 * 179.76169 * 11 10 9 36 36 H 1.08005 * 120.75874 * 180.02562 * 12 11 10 37 37 H 1.09006 * 109.58880 * 173.39584 * 15 5 4 38 38 H 1.09004 * 109.58787 * 293.67783 * 15 5 4 39 39 H 1.09010 * 109.49843 * 185.41504 * 16 15 5 40 40 H 1.08998 * 109.49874 * 65.31508 * 16 15 5 41 41 H 1.08993 * 109.47543 * 64.99967 * 19 17 2 42 42 H 1.09003 * 109.47094 * 304.99537 * 19 17 2 43 43 H 0.96994 * 120.00245 * 359.97438 * 20 19 17 44 44 H 0.96997 * 120.00366 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7241 -1.2494 5 7 1.6516 -2.1384 -1.1691 6 6 0.9741 -2.7224 -2.1773 7 8 0.5557 -2.0491 -3.0984 8 6 0.7394 -4.1844 -2.1626 9 7 1.3290 -4.9369 -1.2411 10 6 1.1435 -6.2374 -1.1902 11 6 0.3277 -6.8776 -2.1103 12 6 -0.3036 -6.1325 -3.0927 13 6 -0.0939 -4.7608 -3.1202 14 17 -0.8586 -3.7770 -4.3290 15 6 2.0140 -2.9039 0.0315 16 6 1.5030 -2.1554 1.2665 17 6 2.0407 -0.7227 1.2485 18 1 3.1304 -0.7443 1.2354 19 6 1.5606 0.0176 2.4983 20 7 2.1467 -0.6030 3.6890 21 6 1.8577 -0.1070 4.9322 22 1 1.1980 0.7419 5.0350 23 6 2.4134 -0.6948 6.0603 24 7 3.2178 -1.7290 5.9350 25 14 2.0197 -0.0178 7.7563 26 1 2.7325 -0.8162 8.7857 27 1 2.4573 1.3990 7.8375 28 1 0.5561 -0.0983 7.9939 29 1 -0.3634 0.5128 0.8905 30 1 -0.3634 0.5149 -0.8894 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6007 -0.2737 -2.1388 33 1 3.1274 -0.6466 -1.2978 34 1 1.6369 -6.8158 -0.4231 35 1 0.1854 -7.9471 -2.0615 36 1 -0.9442 -6.6082 -3.8206 37 1 1.5554 -3.8919 -0.0128 38 1 3.0978 -3.0064 0.0862 39 1 1.8481 -2.6623 2.1678 40 1 0.4132 -2.1351 1.2545 41 1 0.4737 -0.0369 2.5579 42 1 1.8695 1.0615 2.4434 43 1 2.7389 -1.3657 3.5967 44 1 3.4225 -2.0803 5.0543 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185526184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:28 Heat of formation + Delta-G solvation = 31.517964 kcal Electronic energy + Delta-G solvation = -27356.828914 eV Core-core repulsion = 23529.306493 eV Total energy + Delta-G solvation = -3827.522421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.25451 -39.73171 -37.99896 -36.85449 -35.11449 -33.85367 -32.80993 -31.83901 -31.40701 -30.13610 -27.07582 -26.75267 -24.83074 -24.01855 -23.31843 -22.86412 -21.69047 -20.58852 -18.57351 -17.76071 -17.45141 -17.13023 -16.70914 -15.90691 -15.80851 -15.33482 -15.00319 -14.62425 -14.39798 -14.05906 -13.98149 -13.82968 -13.59249 -13.35980 -12.97723 -12.85336 -12.64039 -12.37789 -12.35452 -12.09137 -11.58319 -11.53131 -11.33773 -10.94340 -10.70069 -10.67210 -10.46602 -10.37365 -10.26703 -10.10565 -9.93733 -9.90883 -9.42643 -9.13845 -9.03302 -8.81499 -8.49469 -6.94044 -6.06659 -3.05068 0.11484 0.52756 1.71715 2.48070 2.82149 3.35949 3.53547 3.57211 3.73158 3.74517 4.17531 4.21664 4.36291 4.69367 4.72678 4.74032 4.95322 5.01075 5.04579 5.27686 5.31954 5.40438 5.41554 5.63206 5.64892 5.70882 5.74389 5.81616 5.86805 5.90301 5.99309 6.09682 6.23290 6.24522 6.39377 6.40561 6.49603 6.58543 6.69362 6.82880 6.94663 7.12287 7.40023 7.85172 8.04095 8.80065 9.28584 10.14773 10.30595 11.42205 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.002830 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.231566 B = 9891.028024 C =10923.884779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.081 0.919 4 C 0.116 3.884 5 N -0.581 5.581 6 C 0.562 3.438 7 O -0.520 6.520 8 C 0.093 3.907 9 N -0.431 5.431 10 C 0.096 3.904 11 C -0.138 4.138 12 C -0.075 4.075 13 C -0.041 4.041 14 Cl -0.016 7.016 15 C 0.069 3.931 16 C -0.126 4.126 17 C -0.091 4.091 18 H 0.069 0.931 19 C 0.164 3.836 20 N -0.743 5.743 21 C -0.328 4.328 22 H 0.063 0.937 23 C -0.047 4.047 24 N -0.946 5.946 25 Si 1.079 2.921 26 H -0.285 1.285 27 H -0.296 1.296 28 H -0.296 1.296 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.173 0.827 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.021 0.979 42 H 0.017 0.983 43 H 0.366 0.634 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 -10.628 -21.430 24.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.099 0.901 4 C -0.007 4.007 5 N -0.312 5.312 6 C 0.348 3.652 7 O -0.396 6.396 8 C -0.046 4.046 9 N -0.143 5.143 10 C -0.063 4.063 11 C -0.158 4.158 12 C -0.101 4.101 13 C -0.071 4.071 14 Cl 0.014 6.986 15 C -0.053 4.053 16 C -0.164 4.164 17 C -0.110 4.110 18 H 0.087 0.913 19 C 0.037 3.963 20 N -0.389 5.389 21 C -0.459 4.459 22 H 0.081 0.919 23 C -0.244 4.244 24 N -0.592 5.592 25 Si 0.910 3.090 26 H -0.211 1.211 27 H -0.223 1.223 28 H -0.223 1.223 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.190 0.810 35 H 0.168 0.832 36 H 0.169 0.831 37 H 0.161 0.839 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.039 0.961 42 H 0.034 0.966 43 H 0.200 0.800 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.589 -9.715 -19.777 22.732 hybrid contribution -0.646 -0.348 -2.168 2.289 sum -6.235 -10.064 -21.945 24.935 Atomic orbital electron populations 1.21843 0.94868 1.01922 1.01424 1.21442 0.96686 0.99353 0.94139 0.90089 1.21750 0.99375 0.80155 0.99375 1.47928 1.53940 1.11451 1.17876 1.17715 0.79176 0.85314 0.83043 1.90852 1.49875 1.63260 1.35588 1.21222 0.95611 0.95451 0.92267 1.67877 1.20638 1.06725 1.19023 1.23220 0.95007 0.90300 0.97745 1.22397 0.96670 1.02083 0.94684 1.21631 0.98533 0.91227 0.98715 1.21985 0.97952 0.93038 0.94164 1.98436 1.78666 1.69372 1.52143 1.23123 1.01124 0.98468 0.82537 1.21986 1.01084 0.95703 0.97635 1.21346 1.00069 0.95114 0.94481 0.91304 1.20647 0.95844 0.94526 0.85308 1.42391 1.57295 1.37413 1.01766 1.20039 1.26982 1.13604 0.85302 0.91941 1.25739 0.98307 0.98049 1.02316 1.70881 1.37983 1.25258 1.25052 0.83250 0.75354 0.74898 0.75469 1.21055 1.22339 1.22345 0.92080 0.93198 0.92716 0.89055 0.91384 0.80957 0.83194 0.83065 0.83924 0.91802 0.90135 0.91791 0.96077 0.96556 0.80038 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.38 37.16 0.31 -1.72 16 2 C -0.10 -1.34 2.72 -90.50 -0.25 -1.59 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.12 1.51 5.84 -3.71 -0.02 1.49 16 5 N -0.58 -7.93 2.41 -173.80 -0.42 -8.35 16 6 C 0.56 8.00 7.64 -12.22 -0.09 7.91 16 7 O -0.52 -8.27 13.43 5.35 0.07 -8.20 16 8 C 0.09 1.13 6.60 -82.98 -0.55 0.58 16 9 N -0.43 -4.61 6.09 -9.78 -0.06 -4.67 16 10 C 0.10 0.70 11.18 -17.56 -0.20 0.50 16 11 C -0.14 -0.78 10.11 -39.33 -0.40 -1.17 16 12 C -0.07 -0.53 9.98 -39.27 -0.39 -0.92 16 13 C -0.04 -0.43 6.37 -38.94 -0.25 -0.68 16 14 Cl -0.02 -0.18 26.07 -51.86 -1.35 -1.53 16 15 C 0.07 0.93 5.90 -3.71 -0.02 0.91 16 16 C -0.13 -1.98 4.91 -26.61 -0.13 -2.11 16 17 C -0.09 -1.49 1.96 -90.58 -0.18 -1.67 16 18 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 19 C 0.16 3.39 5.19 -4.04 -0.02 3.37 16 20 N -0.74 -18.91 5.32 -59.91 -0.32 -19.23 16 21 C -0.33 -9.44 9.99 -15.06 -0.15 -9.59 16 22 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 23 C -0.05 -1.38 5.50 -17.43 -0.10 -1.47 16 24 N -0.95 -29.34 13.70 55.49 0.76 -28.58 16 25 Si 1.08 26.23 29.92 -169.99 -5.09 21.14 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16 29 H 0.06 0.90 6.58 -51.93 -0.34 0.56 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.82 5.97 -51.93 -0.31 0.51 16 32 H 0.09 1.22 7.00 -51.93 -0.36 0.85 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.15 0.34 8.06 -52.48 -0.42 -0.08 16 36 H 0.15 0.67 8.06 -52.48 -0.42 0.25 16 37 H 0.14 1.83 3.96 -87.26 -0.35 1.49 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.42 7.15 -51.92 -0.37 1.05 16 40 H 0.06 1.05 6.33 -51.93 -0.33 0.72 16 41 H 0.02 0.45 6.74 -51.93 -0.35 0.10 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.37 9.42 5.67 -40.82 -0.23 9.19 16 44 H 0.25 7.73 6.77 -40.82 -0.28 7.45 16 LS Contribution 357.54 15.07 5.39 5.39 Total: -1.00 -34.18 357.54 -9.37 -43.56 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.93 Total: 6.62 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -2.43 Total: -6.16 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.04 Total: -60.82 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.07 Total: -8.20 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: -5.09 Total: 21.14 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.35 Total: -1.53 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.18 -9.37 -43.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185526184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.074 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds