Wall clock time and date at job start Tue Mar 31 2020 20:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.49593 * 2 1 4 4 C 1.53190 * 109.49995 * 239.90334 * 2 1 3 5 5 N 1.46921 * 108.77877 * 294.68718 * 4 2 1 6 6 C 1.34776 * 120.63552 * 126.36856 * 5 4 2 7 7 O 1.21522 * 119.99792 * 352.16505 * 6 5 4 8 8 C 1.48081 * 120.00200 * 172.16903 * 6 5 4 9 9 N 1.32781 * 119.73671 * 352.12125 * 8 6 5 10 10 C 1.31468 * 121.65305 * 179.75066 * 9 8 6 11 11 C 1.38636 * 120.94231 * 0.53047 * 10 9 8 12 12 C 1.38516 * 119.37418 * 359.73692 * 11 10 9 13 13 C 1.38793 * 118.47805 * 0.02562 * 12 11 10 14 14 Cl 1.73602 * 120.48897 * 179.97438 * 13 12 11 15 15 C 1.46925 * 118.73493 * 306.38962 * 5 4 2 16 16 C 1.53190 * 108.77630 * 53.60887 * 15 5 4 17 17 C 1.53038 * 109.49681 * 120.06371 * 2 1 3 18 18 H 1.08997 * 109.46057 * 178.59117 * 17 2 1 19 19 C 1.52992 * 109.46279 * 298.57014 * 17 2 1 20 20 N 1.46504 * 109.47032 * 185.00126 * 19 17 2 21 21 C 1.36940 * 119.99714 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99975 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99809 * 180.02562 * 21 20 19 24 24 N 1.31621 * 119.99958 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00132 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47509 * 179.97438 * 25 23 21 27 27 H 1.48508 * 109.46911 * 299.99673 * 25 23 21 28 28 H 1.48499 * 109.47198 * 59.99346 * 25 23 21 29 29 H 1.08995 * 109.47424 * 299.93296 * 1 2 3 30 30 H 1.09004 * 109.47550 * 59.93439 * 1 2 3 31 31 H 1.09003 * 109.47350 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.58638 * 54.46941 * 4 2 1 33 33 H 1.08996 * 109.58921 * 174.89574 * 4 2 1 34 34 H 1.07998 * 119.52490 * 180.26744 * 10 9 8 35 35 H 1.08006 * 120.31645 * 179.76169 * 11 10 9 36 36 H 1.08005 * 120.75874 * 180.02562 * 12 11 10 37 37 H 1.09006 * 109.58880 * 173.39584 * 15 5 4 38 38 H 1.09004 * 109.58787 * 293.67783 * 15 5 4 39 39 H 1.09010 * 109.49843 * 185.41504 * 16 15 5 40 40 H 1.08998 * 109.49874 * 65.31508 * 16 15 5 41 41 H 1.08993 * 109.47543 * 64.99967 * 19 17 2 42 42 H 1.09003 * 109.47094 * 304.99537 * 19 17 2 43 43 H 0.96994 * 120.00245 * 359.97438 * 20 19 17 44 44 H 0.96997 * 120.00366 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7241 -1.2494 5 7 1.6516 -2.1384 -1.1691 6 6 0.9741 -2.7224 -2.1773 7 8 0.5557 -2.0491 -3.0984 8 6 0.7394 -4.1844 -2.1626 9 7 1.3290 -4.9369 -1.2411 10 6 1.1435 -6.2374 -1.1902 11 6 0.3277 -6.8776 -2.1103 12 6 -0.3036 -6.1325 -3.0927 13 6 -0.0939 -4.7608 -3.1202 14 17 -0.8586 -3.7770 -4.3290 15 6 2.0140 -2.9039 0.0315 16 6 1.5030 -2.1554 1.2665 17 6 2.0407 -0.7227 1.2485 18 1 3.1304 -0.7443 1.2354 19 6 1.5606 0.0176 2.4983 20 7 2.1467 -0.6030 3.6890 21 6 1.8577 -0.1070 4.9322 22 1 1.1980 0.7419 5.0350 23 6 2.4134 -0.6948 6.0603 24 7 3.2178 -1.7290 5.9350 25 14 2.0197 -0.0178 7.7563 26 1 2.7325 -0.8162 8.7857 27 1 2.4573 1.3990 7.8375 28 1 0.5561 -0.0983 7.9939 29 1 -0.3634 0.5128 0.8905 30 1 -0.3634 0.5149 -0.8894 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6007 -0.2737 -2.1388 33 1 3.1274 -0.6466 -1.2978 34 1 1.6369 -6.8158 -0.4231 35 1 0.1854 -7.9471 -2.0615 36 1 -0.9442 -6.6082 -3.8206 37 1 1.5554 -3.8919 -0.0128 38 1 3.0978 -3.0064 0.0862 39 1 1.8481 -2.6623 2.1678 40 1 0.4132 -2.1351 1.2545 41 1 0.4737 -0.0369 2.5579 42 1 1.8695 1.0615 2.4434 43 1 2.7389 -1.3657 3.5967 44 1 3.4225 -2.0803 5.0543 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185526184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:27 Heat of formation + Delta-G solvation = 10.975159 kcal Electronic energy + Delta-G solvation = -27357.719717 eV Core-core repulsion = 23529.306493 eV Total energy + Delta-G solvation = -3828.413224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.10912 -40.69741 -39.18336 -37.65353 -36.81806 -35.14551 -33.79522 -33.05542 -32.22803 -31.85606 -28.35547 -28.12048 -25.89954 -25.16893 -24.67680 -24.06462 -23.09726 -21.65362 -19.85082 -19.28250 -18.61617 -18.19094 -17.37493 -17.02912 -16.82996 -16.62672 -16.09981 -16.04554 -15.63018 -15.46253 -15.27385 -14.94458 -14.87234 -14.51745 -14.27462 -14.10626 -13.65333 -13.61401 -13.32748 -13.08032 -12.81094 -12.68689 -12.64266 -12.48157 -12.41067 -12.14273 -11.90040 -11.79098 -11.52387 -11.46705 -11.16299 -11.05370 -10.92614 -10.87106 -10.16593 -9.92735 -9.59599 -9.08435 -8.39221 -5.32170 -0.59014 -0.06647 0.97641 1.58357 1.61612 1.68253 1.84907 1.85257 2.60486 2.71431 2.93113 3.40039 3.46065 3.60707 3.62945 3.74455 3.77746 3.85096 4.02854 4.12701 4.16388 4.24355 4.26679 4.41474 4.49752 4.59393 4.66064 4.71124 4.76933 4.79591 4.90921 4.91256 4.95427 5.08636 5.11991 5.14130 5.16717 5.23997 5.43622 5.47720 5.58606 5.70920 6.28157 6.51123 6.51319 7.01302 7.11345 8.01884 8.13343 9.13027 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.002830 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.231566 B = 9891.028024 C =10923.884779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 H 0.093 0.907 4 C 0.118 3.882 5 N -0.584 5.584 6 C 0.556 3.444 7 O -0.545 6.545 8 C 0.062 3.938 9 N -0.454 5.454 10 C 0.091 3.909 11 C -0.113 4.113 12 C -0.072 4.072 13 C -0.054 4.054 14 Cl -0.034 7.034 15 C 0.080 3.920 16 C -0.117 4.117 17 C -0.080 4.080 18 H 0.065 0.935 19 C 0.166 3.834 20 N -0.753 5.753 21 C -0.337 4.337 22 H 0.061 0.939 23 C -0.102 4.102 24 N -0.972 5.972 25 Si 1.127 2.873 26 H -0.290 1.290 27 H -0.279 1.279 28 H -0.279 1.279 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.203 0.797 35 H 0.195 0.805 36 H 0.180 0.820 37 H 0.156 0.844 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.016 0.984 42 H 0.013 0.987 43 H 0.362 0.638 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.444 -12.221 -21.917 25.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 H 0.111 0.889 4 C -0.004 4.004 5 N -0.315 5.315 6 C 0.343 3.657 7 O -0.422 6.422 8 C -0.075 4.075 9 N -0.166 5.166 10 C -0.068 4.068 11 C -0.133 4.133 12 C -0.098 4.098 13 C -0.084 4.084 14 Cl -0.005 7.005 15 C -0.042 4.042 16 C -0.155 4.155 17 C -0.099 4.099 18 H 0.084 0.916 19 C 0.039 3.961 20 N -0.398 5.398 21 C -0.468 4.468 22 H 0.079 0.921 23 C -0.293 4.293 24 N -0.620 5.620 25 Si 0.952 3.048 26 H -0.216 1.216 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.219 0.781 35 H 0.212 0.788 36 H 0.197 0.803 37 H 0.172 0.828 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.034 0.966 42 H 0.031 0.969 43 H 0.195 0.805 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.075 -11.286 -20.309 24.016 hybrid contribution -0.526 0.036 -2.056 2.123 sum -6.601 -11.250 -22.366 25.891 Atomic orbital electron populations 1.21767 0.94999 1.01166 1.01452 1.21391 0.96434 0.99791 0.93238 0.88928 1.21736 1.00053 0.80070 0.98570 1.47967 1.54037 1.11558 1.17897 1.18134 0.78451 0.86524 0.82546 1.90822 1.50808 1.64248 1.36360 1.20927 0.97901 0.94441 0.94217 1.67627 1.21267 1.08450 1.19216 1.23840 0.94999 0.89280 0.98642 1.22887 0.93976 1.03972 0.92427 1.22046 0.98537 0.89715 0.99524 1.22190 0.98211 0.94306 0.93718 1.98423 1.78977 1.70275 1.52821 1.23079 1.01199 0.98661 0.81290 1.21860 1.00352 0.95347 0.97982 1.21223 0.99760 0.95331 0.93584 0.91618 1.20755 0.95212 0.94519 0.85581 1.42564 1.57440 1.37479 1.02340 1.20379 1.26370 1.13321 0.86779 0.92064 1.27182 0.98065 0.97950 1.06137 1.70984 1.39726 1.26723 1.24606 0.82636 0.76017 0.74959 0.71198 1.21609 1.20538 1.20510 0.92963 0.92139 0.93857 0.89085 0.90186 0.78078 0.78762 0.80266 0.82803 0.91563 0.92365 0.92734 0.96611 0.96905 0.80510 0.94484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 8.38 71.98 0.60 -3.27 16 2 C -0.09 -2.45 2.72 -10.72 -0.03 -2.48 16 3 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 4 C 0.12 3.03 5.84 86.36 0.50 3.54 16 5 N -0.58 -15.91 2.41 -822.06 -1.98 -17.89 16 6 C 0.56 15.94 7.64 86.86 0.66 16.60 16 7 O -0.54 -17.60 13.43 -3.78 -0.05 -17.65 16 8 C 0.06 1.47 6.60 41.90 0.28 1.75 16 9 N -0.45 -9.09 6.09 -184.85 -1.12 -10.22 16 10 C 0.09 1.06 11.18 84.84 0.95 2.01 16 11 C -0.11 -0.79 10.11 22.43 0.23 -0.57 16 12 C -0.07 -0.81 9.98 22.47 0.22 -0.58 16 13 C -0.05 -1.08 6.37 22.69 0.14 -0.93 16 14 Cl -0.03 -0.78 26.07 -2.72 -0.07 -0.85 16 15 C 0.08 2.14 5.90 86.36 0.51 2.65 16 16 C -0.12 -3.75 4.91 30.67 0.15 -3.60 16 17 C -0.08 -2.64 1.96 -10.77 -0.02 -2.66 16 18 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 19 C 0.17 6.94 5.19 86.38 0.45 7.38 16 20 N -0.75 -39.08 5.32 -343.46 -1.83 -40.91 16 21 C -0.34 -19.53 9.99 84.03 0.84 -18.69 16 22 H 0.06 3.50 7.83 -2.91 -0.02 3.47 16 23 C -0.10 -6.00 5.50 84.86 0.47 -5.54 16 24 N -0.97 -61.05 13.70 21.65 0.30 -60.75 16 25 Si 1.13 52.55 29.92 68.60 2.05 54.60 16 26 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 27 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 28 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 29 H 0.05 1.55 6.58 -2.39 -0.02 1.53 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.04 1.32 5.97 -2.39 -0.01 1.30 16 32 H 0.09 2.40 7.00 -2.39 -0.02 2.38 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.20 1.04 8.06 -2.91 -0.02 1.01 16 35 H 0.20 -0.32 8.06 -2.91 -0.02 -0.34 16 36 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 37 H 0.16 3.91 3.96 -72.15 -0.29 3.62 16 38 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.06 2.12 7.15 -2.38 -0.02 2.11 16 40 H 0.05 1.83 6.33 -2.39 -0.02 1.82 16 41 H 0.02 0.69 6.74 -2.39 -0.02 0.67 16 42 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.36 19.18 5.67 -92.71 -0.53 18.65 16 44 H 0.24 15.25 6.77 -92.71 -0.63 14.62 16 Total: -1.00 -75.57 357.54 3.63 -71.94 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.38 Total: 26.12 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 5.96 Total: -4.40 kcal Atomic # 7 Polarization: -125.13 SS G_CDS: -4.63 Total: -129.77 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.05 Total: -17.65 kcal Atomic # 14 Polarization: 52.55 SS G_CDS: 2.05 Total: 54.60 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.07 Total: -0.85 kcal Total: -75.57 3.63 -71.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185526184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.916 kcal (2) G-P(sol) polarization free energy of solvation -75.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds