Wall clock time and date at job start Tue Mar 31 2020 21:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47126 * 2 1 4 4 N 1.46500 * 109.46898 * 240.00366 * 2 1 3 5 5 C 1.34773 * 119.99924 * 85.00120 * 4 2 1 6 6 O 1.21613 * 120.00148 * 0.02562 * 5 4 2 7 7 C 1.47381 * 119.99976 * 180.02562 * 5 4 2 8 8 C 1.47020 * 127.19121 * 179.70915 * 7 5 4 9 9 C 1.34183 * 105.95220 * 179.88813 * 8 7 5 10 10 O 1.34212 * 109.12312 * 0.37776 * 9 8 7 11 11 C 1.33649 * 110.91116 * 359.74617 * 10 9 8 12 12 C 1.50698 * 109.47165 * 120.00523 * 2 1 3 13 13 O 1.21278 * 120.00090 * 119.99810 * 12 2 1 14 14 N 1.34781 * 119.99725 * 299.99798 * 12 2 1 15 15 C 1.46502 * 119.99894 * 180.02562 * 14 12 2 16 16 H 1.08998 * 110.63870 * 31.86009 * 15 14 12 17 17 C 1.54326 * 111.00089 * 268.78251 * 15 14 12 18 18 N 1.47029 * 107.26545 * 219.60152 * 17 15 14 19 19 C 1.36936 * 125.64927 * 178.85396 * 18 17 15 20 20 H 1.08000 * 119.99664 * 347.78467 * 19 18 17 21 21 C 1.38814 * 119.99940 * 167.78993 * 19 18 17 22 22 N 1.31611 * 119.99770 * 325.97326 * 21 19 18 23 23 Si 1.86803 * 119.99856 * 145.97398 * 21 19 18 24 24 H 1.48498 * 109.47176 * 59.99787 * 23 21 19 25 25 H 1.48504 * 109.47098 * 299.99679 * 23 21 19 26 26 H 1.48503 * 109.46709 * 179.97438 * 23 21 19 27 27 C 1.47428 * 108.69950 * 358.58471 * 18 17 15 28 28 C 1.54911 * 104.83117 * 24.35676 * 27 18 17 29 29 H 1.08994 * 111.00096 * 81.06545 * 28 27 18 30 30 O 1.42905 * 110.99983 * 204.87839 * 28 27 18 31 31 H 1.08992 * 109.47361 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46996 * 299.99703 * 1 2 3 33 33 H 1.08996 * 109.47124 * 59.99433 * 1 2 3 34 34 H 0.96995 * 120.00236 * 264.99758 * 4 2 1 35 35 H 1.07995 * 127.02991 * 0.02562 * 8 7 5 36 36 H 1.08002 * 125.44012 * 180.12323 * 9 8 7 37 37 H 1.07996 * 125.80345 * 180.02562 * 11 10 9 38 38 H 0.97000 * 120.00291 * 0.02562 * 14 12 2 39 39 H 1.09001 * 109.99550 * 100.12586 * 17 15 14 40 40 H 1.09001 * 109.78084 * 338.95674 * 17 15 14 41 41 H 0.97001 * 120.00692 * 354.24878 * 22 21 19 42 42 H 1.09001 * 110.36401 * 143.19907 * 27 18 17 43 43 H 1.09004 * 110.36635 * 265.51575 * 27 18 17 44 44 H 0.96702 * 113.99621 * 298.54529 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3571 6 8 1.8583 1.1620 -2.4115 7 6 2.6377 -0.7129 -3.5607 8 6 2.8320 -0.1398 -4.9006 9 6 3.2929 -1.1406 -5.6664 10 8 3.3863 -2.2550 -4.9244 11 6 3.0009 -2.0237 -3.6657 12 6 2.0324 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 2.1956 -0.9404 3.6507 16 1 3.1718 -1.3879 3.4641 17 6 1.1899 -2.0127 4.1202 18 7 1.1563 -1.9661 5.5893 19 6 0.3704 -2.7462 6.3949 20 1 -0.4333 -3.3266 5.9664 21 6 0.6067 -2.7908 7.7620 22 7 1.8368 -2.6982 8.2205 23 14 -0.8214 -2.9824 8.9509 24 1 -1.5336 -4.2544 8.6681 25 1 -1.7591 -1.8428 8.7859 26 1 -0.3066 -3.0029 10.3436 27 6 2.1137 -0.9448 6.0518 28 6 2.2591 0.0318 4.8581 29 1 1.4329 0.7422 4.8317 30 8 3.5149 0.7123 4.9032 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 2.2490 -1.6317 -1.1528 35 1 2.6445 0.8790 -5.2056 36 1 3.5444 -1.0629 -6.7139 37 1 2.9808 -2.7507 -2.8674 38 1 1.1488 0.5384 2.5436 39 1 1.5143 -2.9989 3.7879 40 1 0.2006 -1.7912 3.7196 41 1 2.5848 -2.6827 7.6031 42 1 1.7196 -0.4225 6.9235 43 1 3.0744 -1.4037 6.2858 44 1 3.6389 1.2570 5.6926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193165932.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:34 Heat of formation + Delta-G solvation = -73.383146 kcal Electronic energy + Delta-G solvation = -28831.247102 eV Core-core repulsion = 24558.466662 eV Total energy + Delta-G solvation = -4272.780439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.90303 -40.52923 -39.32667 -38.11215 -35.38682 -35.16685 -34.42158 -33.32189 -32.09697 -31.16979 -29.72461 -28.35364 -27.36152 -25.23433 -24.35020 -23.32090 -21.84841 -20.93739 -20.75351 -20.39816 -20.15045 -19.03041 -17.72904 -17.27511 -17.11116 -16.66155 -16.49873 -16.04597 -15.61336 -15.39222 -15.16335 -14.71871 -14.32723 -14.23117 -13.85684 -13.72781 -13.59962 -13.28036 -13.26412 -13.00070 -12.78371 -12.61758 -12.56838 -12.27542 -11.90751 -11.77157 -11.62495 -10.83834 -10.60448 -10.37056 -10.22236 -10.19763 -10.10935 -10.07627 -9.87282 -9.61707 -9.43212 -9.18602 -9.03354 -8.44256 -7.11554 -6.25493 -3.20826 0.97862 1.70572 2.46837 2.49860 2.62872 3.05367 3.23515 3.45411 3.49166 3.67352 4.20669 4.23336 4.29059 4.43367 4.55329 4.68701 4.78588 4.88025 4.96789 5.11361 5.16317 5.27575 5.31604 5.35429 5.45756 5.47728 5.49572 5.55348 5.82281 5.85810 5.86828 5.89129 6.03360 6.22964 6.47753 6.55424 6.62163 6.71159 6.79764 7.19338 7.40762 7.63758 7.83554 7.90702 8.08413 8.36667 8.87292 9.69368 10.20873 11.08404 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.023117 B = 0.002136 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.931546 B =13106.616452 C =13382.117426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 H 0.117 0.883 4 N -0.709 5.709 5 C 0.592 3.408 6 O -0.537 6.537 7 C -0.237 4.237 8 C -0.164 4.164 9 C -0.042 4.042 10 O -0.174 6.174 11 C 0.027 3.973 12 C 0.513 3.487 13 O -0.537 6.537 14 N -0.706 5.706 15 C 0.142 3.858 16 H 0.104 0.896 17 C 0.131 3.869 18 N -0.597 5.597 19 C -0.347 4.347 20 H 0.070 0.930 21 C -0.021 4.021 22 N -0.905 5.905 23 Si 1.058 2.942 24 H -0.292 1.292 25 H -0.293 1.293 26 H -0.285 1.285 27 C 0.119 3.881 28 C 0.077 3.923 29 H 0.068 0.932 30 O -0.563 6.563 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.408 0.592 35 H 0.160 0.840 36 H 0.209 0.791 37 H 0.214 0.786 38 H 0.401 0.599 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.269 0.731 42 H 0.059 0.941 43 H 0.037 0.963 44 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.594 6.703 -22.882 23.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 H 0.134 0.866 4 N -0.362 5.362 5 C 0.380 3.620 6 O -0.415 6.415 7 C -0.241 4.241 8 C -0.184 4.184 9 C -0.108 4.108 10 O -0.068 6.068 11 C -0.043 4.043 12 C 0.298 3.702 13 O -0.413 6.413 14 N -0.357 5.357 15 C 0.037 3.963 16 H 0.122 0.878 17 C 0.004 3.996 18 N -0.325 5.325 19 C -0.474 4.474 20 H 0.088 0.912 21 C -0.223 4.223 22 N -0.544 5.544 23 Si 0.887 3.113 24 H -0.219 1.219 25 H -0.221 1.221 26 H -0.211 1.211 27 C -0.007 4.007 28 C 0.017 3.983 29 H 0.086 0.914 30 O -0.368 6.368 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.245 0.755 35 H 0.178 0.822 36 H 0.226 0.774 37 H 0.230 0.770 38 H 0.236 0.764 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 0.604 6.144 -22.005 22.855 hybrid contribution 0.104 0.339 -0.916 0.982 sum 0.709 6.483 -22.921 23.831 Atomic orbital electron populations 1.22148 0.92455 1.03504 1.03766 1.20768 0.95881 0.98126 0.83302 0.86580 1.45571 1.67586 1.14710 1.08357 1.17218 0.76963 0.86030 0.81763 1.90788 1.50437 1.15312 1.84938 1.21460 1.12314 0.94636 0.95719 1.22782 1.03673 1.00990 0.90934 1.23980 1.05537 0.83406 0.97827 1.83812 1.66381 1.36771 1.19863 1.24576 0.97592 0.96768 0.85386 1.20468 0.80259 0.84750 0.84756 1.90703 1.37893 1.26245 1.86481 1.45843 1.52965 1.31673 1.05188 1.22026 0.99309 0.92669 0.82287 0.87789 1.21650 0.95756 0.95716 0.86499 1.44413 1.47654 1.40902 0.99575 1.19695 1.09621 1.27356 0.90699 0.91192 1.25723 1.01237 0.99593 0.95783 1.70803 0.98378 1.47059 1.38208 0.83625 0.75115 0.76177 0.76337 1.21898 1.22068 1.21081 1.22143 0.94488 0.89699 0.94396 1.23357 0.85443 0.93211 0.96329 0.91411 1.86453 1.37162 1.65911 1.47231 0.91460 0.90627 0.90693 0.75490 0.82227 0.77402 0.77007 0.76384 0.94778 0.94835 0.92042 0.92254 0.94529 0.77320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.38 37.16 0.35 -1.14 16 2 C 0.13 1.41 2.98 -69.08 -0.21 1.20 16 3 H 0.12 1.29 7.58 -51.93 -0.39 0.89 16 4 N -0.71 -7.67 4.94 -56.02 -0.28 -7.95 16 5 C 0.59 7.11 7.78 -12.54 -0.10 7.01 16 6 O -0.54 -8.01 16.64 5.27 0.09 -7.93 16 7 C -0.24 -2.37 6.31 -103.27 -0.65 -3.02 16 8 C -0.16 -1.43 11.01 -37.45 -0.41 -1.84 16 9 C -0.04 -0.27 12.03 29.30 0.35 0.08 16 10 O -0.17 -1.37 10.52 7.67 0.08 -1.29 16 11 C 0.03 0.21 11.61 30.08 0.35 0.56 16 12 C 0.51 7.04 7.22 -10.98 -0.08 6.96 16 13 O -0.54 -9.08 15.48 5.56 0.09 -8.99 16 14 N -0.71 -9.56 5.01 -52.03 -0.26 -9.82 16 15 C 0.14 2.47 3.04 -66.10 -0.20 2.27 16 16 H 0.10 2.05 7.55 -51.93 -0.39 1.66 16 17 C 0.13 2.69 7.01 -3.06 -0.02 2.67 16 18 N -0.60 -14.62 3.33 -170.06 -0.57 -15.18 16 19 C -0.35 -9.54 9.97 -15.06 -0.15 -9.69 16 20 H 0.07 1.93 8.02 -52.49 -0.42 1.51 16 21 C -0.02 -0.58 4.95 -17.43 -0.09 -0.66 16 22 N -0.90 -26.58 12.87 55.49 0.71 -25.87 16 23 Si 1.06 24.55 30.03 -169.99 -5.10 19.44 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 C 0.12 2.62 5.07 -2.53 -0.01 2.61 16 28 C 0.08 1.31 4.06 -24.58 -0.10 1.21 16 29 H 0.07 1.04 8.01 -51.93 -0.42 0.62 16 30 O -0.56 -8.79 13.47 -35.23 -0.47 -9.26 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.59 7.56 -51.93 -0.39 0.20 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.41 3.99 6.76 -40.82 -0.28 3.71 16 35 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.21 0.53 8.06 -52.49 -0.42 0.11 16 37 H 0.21 1.01 7.47 -52.49 -0.39 0.61 16 38 H 0.40 4.31 7.98 -40.82 -0.33 3.98 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 41 H 0.27 7.98 6.45 -40.82 -0.26 7.71 16 42 H 0.06 1.38 7.82 -51.93 -0.41 0.98 16 43 H 0.04 0.88 7.03 -51.93 -0.36 0.52 16 44 H 0.38 4.38 9.11 45.56 0.42 4.79 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -36.35 375.97 -5.97 -42.32 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -4.95 Total: 10.64 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -0.97 Total: 8.22 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -0.39 Total: -58.82 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.22 Total: -27.46 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.10 Total: 19.44 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.35 -5.97 -42.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193165932.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.060 kcal (2) G-P(sol) polarization free energy of solvation -36.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds