Wall clock time and date at job start Tue Mar 31 2020 21:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47126 * 2 1 4 4 N 1.46500 * 109.46898 * 240.00366 * 2 1 3 5 5 C 1.34773 * 119.99924 * 85.00120 * 4 2 1 6 6 O 1.21613 * 120.00148 * 0.02562 * 5 4 2 7 7 C 1.47381 * 119.99976 * 180.02562 * 5 4 2 8 8 C 1.47020 * 127.19121 * 179.70915 * 7 5 4 9 9 C 1.34183 * 105.95220 * 179.88813 * 8 7 5 10 10 O 1.34212 * 109.12312 * 0.37776 * 9 8 7 11 11 C 1.33649 * 110.91116 * 359.74617 * 10 9 8 12 12 C 1.50698 * 109.47165 * 120.00523 * 2 1 3 13 13 O 1.21278 * 120.00090 * 119.99810 * 12 2 1 14 14 N 1.34781 * 119.99725 * 299.99798 * 12 2 1 15 15 C 1.46502 * 119.99894 * 180.02562 * 14 12 2 16 16 H 1.08998 * 110.63870 * 31.86009 * 15 14 12 17 17 C 1.54326 * 111.00089 * 268.78251 * 15 14 12 18 18 N 1.47029 * 107.26545 * 219.60152 * 17 15 14 19 19 C 1.36936 * 125.64927 * 178.85396 * 18 17 15 20 20 H 1.08000 * 119.99664 * 347.78467 * 19 18 17 21 21 C 1.38814 * 119.99940 * 167.78993 * 19 18 17 22 22 N 1.31611 * 119.99770 * 325.97326 * 21 19 18 23 23 Si 1.86803 * 119.99856 * 145.97398 * 21 19 18 24 24 H 1.48498 * 109.47176 * 59.99787 * 23 21 19 25 25 H 1.48504 * 109.47098 * 299.99679 * 23 21 19 26 26 H 1.48503 * 109.46709 * 179.97438 * 23 21 19 27 27 C 1.47428 * 108.69950 * 358.58471 * 18 17 15 28 28 C 1.54911 * 104.83117 * 24.35676 * 27 18 17 29 29 H 1.08994 * 111.00096 * 81.06545 * 28 27 18 30 30 O 1.42905 * 110.99983 * 204.87839 * 28 27 18 31 31 H 1.08992 * 109.47361 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46996 * 299.99703 * 1 2 3 33 33 H 1.08996 * 109.47124 * 59.99433 * 1 2 3 34 34 H 0.96995 * 120.00236 * 264.99758 * 4 2 1 35 35 H 1.07995 * 127.02991 * 0.02562 * 8 7 5 36 36 H 1.08002 * 125.44012 * 180.12323 * 9 8 7 37 37 H 1.07996 * 125.80345 * 180.02562 * 11 10 9 38 38 H 0.97000 * 120.00291 * 0.02562 * 14 12 2 39 39 H 1.09001 * 109.99550 * 100.12586 * 17 15 14 40 40 H 1.09001 * 109.78084 * 338.95674 * 17 15 14 41 41 H 0.97001 * 120.00692 * 354.24878 * 22 21 19 42 42 H 1.09001 * 110.36401 * 143.19907 * 27 18 17 43 43 H 1.09004 * 110.36635 * 265.51575 * 27 18 17 44 44 H 0.96702 * 113.99621 * 298.54529 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3571 6 8 1.8583 1.1620 -2.4115 7 6 2.6377 -0.7129 -3.5607 8 6 2.8320 -0.1398 -4.9006 9 6 3.2929 -1.1406 -5.6664 10 8 3.3863 -2.2550 -4.9244 11 6 3.0009 -2.0237 -3.6657 12 6 2.0324 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 2.1956 -0.9404 3.6507 16 1 3.1718 -1.3879 3.4641 17 6 1.1899 -2.0127 4.1202 18 7 1.1563 -1.9661 5.5893 19 6 0.3704 -2.7462 6.3949 20 1 -0.4333 -3.3266 5.9664 21 6 0.6067 -2.7908 7.7620 22 7 1.8368 -2.6982 8.2205 23 14 -0.8214 -2.9824 8.9509 24 1 -1.5336 -4.2544 8.6681 25 1 -1.7591 -1.8428 8.7859 26 1 -0.3066 -3.0029 10.3436 27 6 2.1137 -0.9448 6.0518 28 6 2.2591 0.0318 4.8581 29 1 1.4329 0.7422 4.8317 30 8 3.5149 0.7123 4.9032 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 2.2490 -1.6317 -1.1528 35 1 2.6445 0.8790 -5.2056 36 1 3.5444 -1.0629 -6.7139 37 1 2.9808 -2.7507 -2.8674 38 1 1.1488 0.5384 2.5436 39 1 1.5143 -2.9989 3.7879 40 1 0.2006 -1.7912 3.7196 41 1 2.5848 -2.6827 7.6031 42 1 1.7196 -0.4225 6.9235 43 1 3.0744 -1.4037 6.2858 44 1 3.6389 1.2570 5.6926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193165932.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:33 Heat of formation + Delta-G solvation = -104.054226 kcal Electronic energy + Delta-G solvation = -28832.577099 eV Core-core repulsion = 24558.466662 eV Total energy + Delta-G solvation = -4274.110437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.50718 -41.64024 -40.46607 -39.51135 -36.88052 -36.17952 -35.84206 -34.09521 -33.74432 -32.11250 -30.49389 -29.97075 -28.94788 -26.42454 -25.84671 -24.30242 -22.58907 -22.43698 -22.08771 -21.46529 -21.23080 -19.83966 -19.59808 -18.56608 -18.13548 -17.73124 -17.17063 -17.07112 -16.82460 -16.51798 -16.03998 -15.94551 -15.73403 -15.62097 -15.37731 -15.16683 -14.72354 -14.55525 -14.33005 -14.02038 -13.86407 -13.82583 -13.47414 -13.33122 -13.29677 -13.24660 -12.74590 -12.65746 -12.48889 -11.90350 -11.83547 -11.74536 -11.32504 -11.29014 -11.01469 -10.88699 -10.55339 -10.37930 -10.28019 -9.77303 -9.13953 -8.43464 -5.35124 0.29088 1.10906 1.35189 1.54519 1.59733 1.65809 1.86046 2.02649 2.19344 2.26472 2.59717 2.89106 3.10899 3.33774 3.44444 3.58387 3.71588 3.75154 3.89686 3.92221 3.94717 4.02238 4.10345 4.25229 4.38435 4.50905 4.60093 4.71673 4.73046 4.75193 4.79987 4.88123 4.97572 5.02670 5.13113 5.17083 5.28194 5.32321 5.60641 5.96216 6.22155 6.30274 6.35018 6.71442 6.78337 6.98206 7.02823 7.62640 8.17110 8.89628 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.023117 B = 0.002136 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.931546 B =13106.616452 C =13382.117426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.135 3.865 3 H 0.120 0.880 4 N -0.705 5.705 5 C 0.593 3.407 6 O -0.573 6.573 7 C -0.270 4.270 8 C -0.193 4.193 9 C -0.024 4.024 10 O -0.178 6.178 11 C 0.041 3.959 12 C 0.516 3.484 13 O -0.569 6.569 14 N -0.693 5.693 15 C 0.157 3.843 16 H 0.080 0.920 17 C 0.132 3.868 18 N -0.617 5.617 19 C -0.356 4.356 20 H 0.065 0.935 21 C -0.072 4.072 22 N -0.932 5.932 23 Si 1.113 2.887 24 H -0.277 1.277 25 H -0.276 1.276 26 H -0.293 1.293 27 C 0.122 3.878 28 C 0.102 3.898 29 H 0.099 0.901 30 O -0.566 6.566 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.413 0.587 35 H 0.159 0.841 36 H 0.249 0.751 37 H 0.238 0.762 38 H 0.419 0.581 39 H 0.010 0.990 40 H 0.049 0.951 41 H 0.253 0.747 42 H 0.041 0.959 43 H 0.007 0.993 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.464 7.461 -24.271 25.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.027 3.973 3 H 0.138 0.862 4 N -0.358 5.358 5 C 0.383 3.617 6 O -0.454 6.454 7 C -0.275 4.275 8 C -0.213 4.213 9 C -0.089 4.089 10 O -0.072 6.072 11 C -0.029 4.029 12 C 0.302 3.698 13 O -0.448 6.448 14 N -0.345 5.345 15 C 0.051 3.949 16 H 0.098 0.902 17 C 0.005 3.995 18 N -0.345 5.345 19 C -0.484 4.484 20 H 0.082 0.918 21 C -0.269 4.269 22 N -0.573 5.573 23 Si 0.937 3.063 24 H -0.202 1.202 25 H -0.202 1.202 26 H -0.219 1.219 27 C -0.004 4.004 28 C 0.041 3.959 29 H 0.117 0.883 30 O -0.373 6.373 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.251 0.749 35 H 0.177 0.823 36 H 0.265 0.735 37 H 0.254 0.746 38 H 0.257 0.743 39 H 0.029 0.971 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -0.464 6.927 -23.424 24.432 hybrid contribution 0.507 0.044 -0.564 0.760 sum 0.043 6.971 -23.988 24.981 Atomic orbital electron populations 1.22135 0.90735 1.03746 1.04677 1.20758 0.97018 0.97658 0.81888 0.86214 1.45575 1.67242 1.14905 1.08095 1.17491 0.76258 0.85649 0.82336 1.90756 1.52303 1.16800 1.85538 1.21512 1.14423 0.95876 0.95664 1.22963 1.05481 1.01823 0.91003 1.24680 1.03207 0.82109 0.98912 1.83851 1.66128 1.37302 1.19935 1.24999 0.95732 0.96347 0.85845 1.20925 0.79376 0.84199 0.85294 1.90696 1.39316 1.27844 1.86943 1.45603 1.53067 1.31897 1.03952 1.21524 0.97247 0.92242 0.83892 0.90195 1.21712 0.97315 0.95847 0.84604 1.44660 1.47625 1.41158 1.01088 1.19949 1.09582 1.27431 0.91455 0.91761 1.27130 1.02566 0.99383 0.97788 1.70932 0.98764 1.49878 1.37744 0.82898 0.72422 0.77325 0.73669 1.20250 1.20177 1.21883 1.22089 0.92261 0.90013 0.96064 1.23053 0.87083 0.92613 0.93125 0.88302 1.86425 1.36424 1.65955 1.48534 0.91523 0.88697 0.90814 0.74884 0.82285 0.73532 0.74589 0.74250 0.97146 0.93278 0.93745 0.94031 0.97507 0.75001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.38 71.98 0.68 -1.88 16 2 C 0.14 2.78 2.98 44.25 0.13 2.92 16 3 H 0.12 2.46 7.58 -2.39 -0.02 2.45 16 4 N -0.70 -14.69 4.94 -449.41 -2.22 -16.91 16 5 C 0.59 14.04 7.78 86.65 0.67 14.71 16 6 O -0.57 -17.14 16.64 -4.07 -0.07 -17.21 16 7 C -0.27 -5.25 6.31 -18.99 -0.12 -5.37 16 8 C -0.19 -3.21 11.01 23.65 0.26 -2.95 16 9 C -0.02 -0.26 12.03 66.89 0.80 0.54 16 10 O -0.18 -2.43 10.52 4.52 0.05 -2.38 16 11 C 0.04 0.58 11.61 67.39 0.78 1.36 16 12 C 0.52 13.48 7.22 87.66 0.63 14.12 16 13 O -0.57 -19.01 15.48 -3.02 -0.05 -19.05 16 14 N -0.69 -17.42 5.01 -436.92 -2.19 -19.61 16 15 C 0.16 5.36 3.04 46.18 0.14 5.50 16 16 H 0.08 3.17 7.55 -2.39 -0.02 3.15 16 17 C 0.13 5.42 7.01 86.73 0.61 6.03 16 18 N -0.62 -30.56 3.33 -691.94 -2.30 -32.87 16 19 C -0.36 -19.79 9.97 84.03 0.84 -18.95 16 20 H 0.06 3.56 8.02 -2.91 -0.02 3.54 16 21 C -0.07 -4.02 4.95 84.86 0.42 -3.60 16 22 N -0.93 -56.09 12.87 21.65 0.28 -55.82 16 23 Si 1.11 49.45 30.03 68.60 2.06 51.51 16 24 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 27 C 0.12 5.44 5.07 86.86 0.44 5.88 16 28 C 0.10 3.31 4.06 31.98 0.13 3.44 16 29 H 0.10 2.68 8.01 -2.39 -0.02 2.66 16 30 O -0.57 -16.62 13.47 -148.98 -2.01 -18.63 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 1.20 7.56 -2.38 -0.02 1.18 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.41 7.72 6.76 -92.71 -0.63 7.09 16 35 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.25 0.42 8.06 -2.91 -0.02 0.40 16 37 H 0.24 1.81 7.47 -2.91 -0.02 1.79 16 38 H 0.42 7.66 7.98 -92.71 -0.74 6.92 16 39 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.05 1.88 8.03 -2.39 -0.02 1.86 16 41 H 0.25 15.65 6.45 -92.71 -0.60 15.05 16 42 H 0.04 1.97 7.82 -2.39 -0.02 1.95 16 43 H 0.01 0.36 7.03 -2.39 -0.02 0.34 16 44 H 0.40 8.38 9.11 -74.06 -0.67 7.70 16 Total: -1.00 -81.05 375.97 -0.83 -81.87 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: -0.80 Total: 27.36 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: 6.42 Total: 21.73 kcal Atomic # 7 Polarization: -118.77 SS G_CDS: -6.43 Total: -125.20 kcal Atomic # 8 Polarization: -55.19 SS G_CDS: -2.07 Total: -57.27 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 2.06 Total: 51.51 kcal Total: -81.05 -0.83 -81.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193165932.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.181 kcal (2) G-P(sol) polarization free energy of solvation -81.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds